Wall clock time and date at job start Tue Mar 31 2020 07:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47389 * 2 1 4 4 O 1.42901 * 109.46918 * 239.99783 * 2 1 3 5 5 C 1.53004 * 109.47059 * 120.00346 * 2 1 3 6 6 H 1.09001 * 109.47150 * 304.99218 * 5 2 1 7 7 F 1.39900 * 109.46623 * 184.99824 * 5 2 1 8 8 C 1.52996 * 109.47155 * 64.99840 * 5 2 1 9 9 N 1.46505 * 109.46922 * 179.97438 * 8 5 2 10 10 C 1.34775 * 119.99785 * 180.02562 * 9 8 5 11 11 O 1.21545 * 120.00203 * 359.97438 * 10 9 8 12 12 C 1.47884 * 119.99516 * 180.02562 * 10 9 8 13 13 C 1.39919 * 120.03123 * 359.72296 * 12 10 9 14 14 C 1.38326 * 120.36139 * 179.78501 * 13 12 10 15 15 C 1.37749 * 120.41123 * 0.47266 * 14 13 12 16 16 C 1.40752 * 120.04114 * 359.78268 * 15 14 13 17 17 C 1.41436 * 120.17804 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99900 * 334.92974 * 17 16 15 19 19 C 1.39938 * 120.00045 * 154.93115 * 17 16 15 20 20 N 1.30831 * 119.99756 * 342.58232 * 19 17 16 21 21 Si 1.86800 * 119.99906 * 162.57497 * 19 17 16 22 22 H 1.48496 * 109.47212 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46696 * 120.00472 * 21 19 17 24 24 H 1.48501 * 109.46957 * 240.00077 * 21 19 17 25 25 C 1.38998 * 120.02108 * 179.97438 * 12 10 9 26 26 H 1.09001 * 109.46989 * 299.99888 * 1 2 3 27 27 H 1.08996 * 109.47418 * 59.99733 * 1 2 3 28 28 H 1.09001 * 109.47421 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47399 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46999 * 300.00018 * 3 2 1 31 31 H 1.09001 * 109.46963 * 60.00096 * 3 2 1 32 32 H 0.96703 * 113.99968 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.47342 * 60.00135 * 8 5 2 34 34 H 1.08999 * 109.46966 * 299.99595 * 8 5 2 35 35 H 0.97001 * 120.00005 * 359.97438 * 9 8 5 36 36 H 1.08004 * 119.81770 * 359.97438 * 13 12 10 37 37 H 1.08003 * 119.79233 * 180.22755 * 14 13 12 38 38 H 1.08000 * 119.98306 * 179.76482 * 15 14 13 39 39 H 0.96996 * 119.99696 * 180.02562 * 20 19 17 40 40 H 1.07993 * 120.20751 * 359.95943 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6737 -1.1668 5 6 2.0399 -0.7213 1.2492 6 1 1.6054 -0.2618 2.1370 7 9 3.4342 -0.6226 1.3081 8 6 1.6351 -2.1955 1.1879 9 7 2.1240 -2.8863 2.3838 10 6 1.8841 -4.2024 2.5471 11 8 1.2617 -4.8162 1.7025 12 6 2.3771 -4.8995 3.7546 13 6 3.0977 -4.1946 4.7250 14 6 3.5582 -4.8389 5.8591 15 6 3.3214 -6.1835 6.0419 16 6 2.6030 -6.9104 5.0742 17 6 2.3577 -8.2910 5.2592 18 1 3.0175 -8.8781 5.8807 19 6 1.2601 -8.8962 4.6369 20 7 0.2819 -8.1601 4.1755 21 14 1.1920 -10.7550 4.4646 22 1 2.4121 -11.3528 5.0640 23 1 -0.0092 -11.2734 5.1674 24 1 1.1184 -11.1165 3.0262 25 6 2.1295 -6.2568 3.9238 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.9702 -0.7115 -1.2331 33 1 2.0698 -2.6550 0.3002 34 1 0.5488 -2.2724 1.1421 35 1 2.6210 -2.3966 3.0577 36 1 3.2928 -3.1411 4.5892 37 1 4.1103 -4.2850 6.6040 38 1 3.6875 -6.6804 6.9282 39 1 -0.4791 -8.5797 3.7445 40 1 1.5768 -6.8057 3.1759 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188689414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:32:02 Heat of formation + Delta-G solvation = -154.129583 kcal Electronic energy + Delta-G solvation = -23443.419201 eV Core-core repulsion = 19749.663324 eV Total energy + Delta-G solvation = -3693.755877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.87576 -40.93356 -39.24395 -38.77493 -36.04843 -35.54756 -33.70002 -32.21512 -31.30396 -29.94705 -28.16531 -27.20896 -25.18599 -23.48532 -22.75811 -21.71575 -21.08997 -19.61585 -18.30402 -18.10953 -17.73920 -17.18539 -16.93573 -16.48724 -16.19954 -15.92700 -15.83021 -15.26558 -15.01338 -14.97570 -14.39564 -14.28684 -14.19507 -13.81960 -13.54368 -13.47118 -13.16181 -13.08062 -12.96366 -12.80104 -12.57219 -12.50539 -12.24320 -12.16582 -11.93131 -11.69151 -11.51226 -11.09632 -11.08207 -10.74007 -10.26042 -9.49232 -9.39950 -8.67376 -6.39149 0.34732 0.99223 1.36346 1.46073 1.52643 2.05774 2.07681 2.18964 2.77169 3.07790 3.27437 3.40276 3.62708 3.68505 3.84124 3.98279 4.01927 4.16221 4.40805 4.57377 4.62048 4.68190 4.75410 4.84328 4.85530 4.89954 4.97496 5.07863 5.17313 5.20457 5.28499 5.30996 5.33669 5.50398 5.84349 5.90621 6.04065 6.26841 6.45206 6.63221 6.66547 6.87090 6.93254 7.22912 8.29764 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.025400 B = 0.003344 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.111413 B = 8372.075709 C = 9154.171805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.109 3.891 3 C -0.174 4.174 4 O -0.570 6.570 5 C 0.063 3.937 6 H 0.124 0.876 7 F -0.211 7.211 8 C 0.097 3.903 9 N -0.714 5.714 10 C 0.561 3.439 11 O -0.587 6.587 12 C -0.140 4.140 13 C -0.197 4.197 14 C -0.095 4.095 15 C -0.216 4.216 16 C 0.067 3.933 17 C -0.497 4.497 18 H 0.084 0.916 19 C 0.029 3.971 20 N -0.825 5.825 21 Si 0.983 3.017 22 H -0.251 1.251 23 H -0.263 1.263 24 H -0.271 1.271 25 C -0.130 4.130 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.389 0.611 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.413 0.587 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.110 0.890 39 H 0.286 0.714 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.332 18.165 -4.671 18.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.068 3.932 3 C -0.231 4.231 4 O -0.378 6.378 5 C 0.026 3.974 6 H 0.142 0.858 7 F -0.191 7.191 8 C -0.027 4.027 9 N -0.367 5.367 10 C 0.351 3.649 11 O -0.468 6.468 12 C -0.143 4.143 13 C -0.217 4.217 14 C -0.113 4.113 15 C -0.236 4.236 16 C 0.065 3.935 17 C -0.526 4.526 18 H 0.102 0.898 19 C -0.186 4.186 20 N -0.451 5.451 21 Si 0.804 3.196 22 H -0.174 1.174 23 H -0.188 1.188 24 H -0.196 1.196 25 C -0.150 4.150 26 H 0.116 0.884 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.238 0.762 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.251 0.749 36 H 0.153 0.847 37 H 0.158 0.842 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.059 17.701 -5.495 18.564 hybrid contribution 0.573 -0.899 0.155 1.077 sum 1.632 16.802 -5.340 17.705 Atomic orbital electron populations 1.21901 0.90808 1.03198 1.04618 1.21837 0.96456 0.92051 0.82899 1.22421 1.02227 0.94061 1.04382 1.86572 1.28233 1.79535 1.43416 1.22710 0.76583 0.94969 1.03138 0.85791 1.92820 1.31430 1.97107 1.97785 1.21923 1.00786 0.91862 0.88142 1.45649 1.58232 1.08615 1.24239 1.18753 0.78129 0.82132 0.85854 1.90680 1.42835 1.67482 1.45841 1.19755 1.04006 0.94836 0.95737 1.20844 1.05319 0.99399 0.96154 1.20928 0.99045 0.94037 0.97256 1.21428 1.07789 0.94994 0.99349 1.17955 0.91014 0.94101 0.90449 1.19888 1.10184 0.94410 1.28102 0.89751 1.26866 0.93663 1.05873 0.92217 1.69893 1.06370 1.40142 1.28697 0.85143 0.79702 0.75951 0.78840 1.17429 1.18801 1.19613 1.21436 1.02273 0.93278 0.98030 0.88358 0.90454 0.92687 0.91629 0.90569 0.89603 0.76179 0.91776 0.89938 0.74893 0.84712 0.84224 0.87219 0.90312 0.88396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.60 71.98 0.62 -1.53 16 2 C 0.11 1.72 0.93 -10.80 -0.01 1.71 16 3 C -0.17 -1.95 8.65 71.98 0.62 -1.32 16 4 O -0.57 -11.23 12.10 -148.98 -1.80 -13.04 16 5 C 0.06 1.13 2.75 30.59 0.08 1.21 16 6 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 7 F -0.21 -4.30 16.01 44.97 0.72 -3.58 16 8 C 0.10 2.62 4.99 86.38 0.43 3.05 16 9 N -0.71 -22.98 5.44 -465.94 -2.53 -25.51 16 10 C 0.56 25.16 7.77 86.80 0.67 25.84 16 11 O -0.59 -31.19 16.33 -3.86 -0.06 -31.25 16 12 C -0.14 -6.71 5.87 -20.13 -0.12 -6.83 16 13 C -0.20 -7.79 9.55 22.70 0.22 -7.58 16 14 C -0.09 -3.75 10.01 22.17 0.22 -3.52 16 15 C -0.22 -10.10 9.78 22.77 0.22 -9.88 16 16 C 0.07 3.67 5.57 -21.32 -0.12 3.55 16 17 C -0.50 -27.22 9.05 23.47 0.21 -27.00 16 18 H 0.08 4.36 7.90 -2.91 -0.02 4.34 16 19 C 0.03 1.51 5.14 85.25 0.44 1.95 16 20 N -0.83 -46.39 10.97 21.83 0.24 -46.15 16 21 Si 0.98 39.96 29.59 68.60 2.03 41.99 16 22 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 23 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 25 C -0.13 -7.28 8.23 23.01 0.19 -7.09 16 26 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 1.01 6.57 -2.39 -0.02 0.99 16 29 H 0.06 0.77 7.69 -2.39 -0.02 0.75 16 30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.39 5.87 8.84 -74.05 -0.65 5.22 16 33 H 0.06 2.00 7.56 -2.39 -0.02 1.98 16 34 H 0.08 2.30 6.57 -2.39 -0.02 2.29 16 35 H 0.41 10.92 6.43 -92.71 -0.60 10.33 16 36 H 0.14 4.04 6.38 -2.91 -0.02 4.02 16 37 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 38 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 39 H 0.29 14.79 8.30 -92.71 -0.77 14.02 16 40 H 0.10 6.14 5.76 -2.91 -0.02 6.13 16 Total: -1.00 -71.73 337.45 2.11 -69.63 By element: Atomic # 1 Polarization: 35.54 SS G_CDS: -0.17 Total: 35.37 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: 3.69 Total: -27.46 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -2.29 Total: -71.66 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -1.87 Total: -44.29 kcal Atomic # 9 Polarization: -4.30 SS G_CDS: 0.72 Total: -3.58 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -71.73 2.11 -69.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188689414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.504 kcal (2) G-P(sol) polarization free energy of solvation -71.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds