Wall clock time and date at job start Tue Mar 31 2020 06:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47009 * 2 1 4 4 C 1.38387 * 119.92508 * 270.01433 * 3 2 1 5 5 C 1.38341 * 120.29453 * 180.02562 * 4 3 2 6 6 C 1.37972 * 120.14860 * 359.72393 * 5 4 3 7 7 C 1.39576 * 119.85073 * 0.52955 * 6 5 4 8 8 C 1.47812 * 120.14788 * 179.74391 * 7 6 5 9 9 O 1.21557 * 119.99859 * 179.72466 * 8 7 6 10 10 N 1.34777 * 119.99978 * 359.73096 * 8 7 6 11 11 C 1.39851 * 120.00061 * 175.09403 * 10 8 7 12 12 C 1.39308 * 119.95282 * 146.31659 * 11 10 8 13 13 C 1.38482 * 120.42876 * 179.97438 * 12 11 10 14 14 C 1.37687 * 120.32495 * 359.97438 * 13 12 11 15 15 C 1.40746 * 119.88813 * 0.02562 * 14 13 12 16 16 C 1.41407 * 120.20639 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99338 * 151.88685 * 16 15 14 18 18 C 1.39933 * 120.00119 * 331.88289 * 16 15 14 19 19 N 1.30827 * 120.00109 * 348.97683 * 18 16 15 20 20 Si 1.86801 * 119.99768 * 168.97687 * 18 16 15 21 21 H 1.48497 * 109.47091 * 59.99781 * 20 18 16 22 22 H 1.48493 * 109.47246 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47163 * 299.99903 * 20 18 16 24 24 C 1.38268 * 119.94841 * 326.04110 * 11 10 8 25 25 C 1.37936 * 119.93122 * 89.99747 * 3 2 1 26 26 H 1.08995 * 109.47451 * 300.00422 * 1 2 3 27 27 H 1.09003 * 109.46770 * 60.00695 * 1 2 3 28 28 H 1.09003 * 109.46888 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47451 * 239.99578 * 2 1 3 30 30 H 1.09003 * 109.46770 * 119.99305 * 2 1 3 31 31 H 1.07998 * 119.85171 * 359.97438 * 4 3 2 32 32 H 1.08005 * 119.92565 * 180.02562 * 5 4 3 33 33 H 1.07995 * 120.07870 * 180.28004 * 6 5 4 34 34 H 0.97001 * 119.99472 * 354.81415 * 10 8 7 35 35 H 1.08001 * 119.78349 * 0.02562 * 12 11 10 36 36 H 1.08000 * 119.83783 * 179.97438 * 13 12 11 37 37 H 1.08003 * 120.05285 * 179.97438 * 14 13 12 38 38 H 0.96996 * 119.99952 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.15985 * 0.02562 * 24 11 10 40 40 H 1.07999 * 120.07235 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0717 -1.1994 5 6 2.7237 3.3758 -1.2083 6 6 2.9526 4.0381 -0.0197 7 6 2.7280 3.3856 1.1935 8 6 2.9764 4.0869 2.4707 9 8 2.7751 3.5177 3.5258 10 7 3.4261 5.3574 2.4655 11 6 3.5635 6.0555 3.6695 12 6 4.5907 6.9842 3.8217 13 6 4.7356 7.6814 5.0094 14 6 3.8648 7.4643 6.0536 15 6 2.8222 6.5291 5.9145 16 6 1.9244 6.3005 6.9828 17 1 0.9152 5.9739 6.7794 18 6 2.3435 6.4972 8.3033 19 7 3.6118 6.6807 8.5667 20 14 1.0920 6.4980 9.6901 21 1 0.3931 5.1883 9.7268 22 1 1.7860 6.7245 10.9832 23 1 0.1019 7.5811 9.4628 24 6 2.6763 5.8270 4.7050 25 6 2.2616 2.0697 1.1954 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 2.0811 1.5591 -2.1326 32 1 2.9007 3.8784 -2.1478 33 1 3.3087 5.0576 -0.0280 34 1 3.6582 5.7862 1.6269 35 1 5.2779 7.1623 3.0078 36 1 5.5355 8.3989 5.1171 37 1 3.9821 8.0102 6.9781 38 1 3.9022 6.8174 9.4820 39 1 1.8771 5.1102 4.5867 40 1 2.0820 1.5605 2.1307 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192973512.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:21 Heat of formation + Delta-G solvation = -1.254184 kcal Electronic energy + Delta-G solvation = -22076.443308 eV Core-core repulsion = 18820.085830 eV Total energy + Delta-G solvation = -3256.357478 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.24640 -38.78230 -37.04675 -34.60267 -34.22906 -32.97413 -31.20542 -29.79723 -29.66209 -27.96407 -25.28792 -24.22842 -23.85116 -21.66843 -21.15660 -20.77711 -19.36795 -17.97973 -17.14688 -16.12024 -15.80538 -15.36023 -14.99434 -14.81712 -14.67782 -14.44799 -13.90304 -13.75017 -13.59426 -13.22622 -13.04587 -12.81468 -12.27559 -12.11115 -11.98654 -11.67173 -11.64836 -11.28883 -11.17832 -11.08643 -10.98112 -10.64537 -10.48422 -10.12279 -9.74475 -9.49130 -9.14990 -9.02029 -8.87738 -8.86677 -7.40093 -6.87567 -6.63761 -4.32282 0.82834 1.23587 2.70154 2.88240 3.11380 3.15117 3.21437 3.30249 3.58980 3.94335 4.00813 4.51531 4.64578 4.70339 4.78501 4.93040 5.05147 5.13820 5.20348 5.34362 5.38524 5.64489 5.69380 5.73877 5.81492 5.90050 6.01712 6.23124 6.24303 6.28362 6.39586 6.42228 6.74455 6.79804 7.03659 7.06425 7.10300 7.29761 7.57664 7.74363 7.98613 8.11137 8.18409 8.28991 8.64756 8.74196 8.97175 9.00742 10.29615 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.019349 B = 0.003442 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.760118 B = 8133.963456 C = 9333.170870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 C -0.092 4.092 4 C -0.099 4.099 5 C -0.125 4.125 6 C -0.094 4.094 7 C -0.120 4.120 8 C 0.544 3.456 9 O -0.510 6.510 10 N -0.662 5.662 11 C 0.149 3.851 12 C -0.258 4.258 13 C -0.094 4.094 14 C -0.167 4.167 15 C 0.119 3.881 16 C -0.458 4.458 17 H 0.076 0.924 18 C 0.074 3.926 19 N -0.801 5.801 20 Si 0.912 3.088 21 H -0.266 1.266 22 H -0.279 1.279 23 H -0.264 1.264 24 C -0.207 4.207 25 C -0.060 4.060 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.397 0.603 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.279 0.721 39 H 0.107 0.893 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.264 -7.143 -17.165 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.118 4.118 5 C -0.143 4.143 6 C -0.113 4.113 7 C -0.123 4.123 8 C 0.331 3.669 9 O -0.385 6.385 10 N -0.306 5.306 11 C 0.057 3.943 12 C -0.280 4.280 13 C -0.113 4.113 14 C -0.187 4.187 15 C 0.116 3.884 16 C -0.488 4.488 17 H 0.094 0.906 18 C -0.143 4.143 19 N -0.427 5.427 20 Si 0.737 3.263 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.189 1.189 24 C -0.228 4.228 25 C -0.078 4.078 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.232 0.768 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.140 0.860 38 H 0.090 0.910 39 H 0.125 0.875 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.274 -7.541 -16.204 18.017 hybrid contribution -0.197 0.253 0.181 0.368 sum -2.470 -7.288 -16.023 17.775 Atomic orbital electron populations 1.21766 0.94592 1.01775 1.02423 1.20548 0.96326 0.92259 1.03047 1.19881 0.99848 0.96676 0.92796 1.21184 0.98256 0.94808 0.97521 1.21050 1.00392 0.94976 0.97882 1.21335 0.98467 0.99637 0.91839 1.20084 1.03558 0.95563 0.93105 1.18294 0.78236 0.81555 0.88769 1.90841 1.49886 1.65735 1.32040 1.43357 1.65158 1.12962 1.09148 1.17425 0.96403 0.94880 0.85563 1.20058 1.01614 1.07061 0.99237 1.20480 0.98546 0.98904 0.93362 1.21424 0.98374 1.00559 0.98356 1.17497 0.91695 0.88242 0.90956 1.19519 0.99021 1.40096 0.90196 0.90589 1.25879 0.95635 0.92477 1.00300 1.69792 1.15307 1.35810 1.21830 0.86311 0.80996 0.79849 0.79189 1.19036 1.20374 1.18907 1.20997 1.01950 1.04590 0.95294 1.21196 0.95121 0.93049 0.98472 0.92228 0.92619 0.92337 0.90970 0.90692 0.85868 0.85513 0.85629 0.76796 0.89272 0.88970 0.86011 0.90966 0.87539 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.89 37.16 0.37 -0.83 16 2 C -0.08 -0.72 6.06 -27.89 -0.17 -0.89 16 3 C -0.09 -1.00 5.13 -104.68 -0.54 -1.54 16 4 C -0.10 -0.94 9.69 -39.49 -0.38 -1.32 16 5 C -0.13 -1.20 10.03 -39.64 -0.40 -1.60 16 6 C -0.09 -1.09 9.54 -39.18 -0.37 -1.46 16 7 C -0.12 -1.79 5.87 -104.97 -0.62 -2.40 16 8 C 0.54 10.51 7.51 -12.34 -0.09 10.41 16 9 O -0.51 -12.10 14.05 5.32 0.07 -12.03 16 10 N -0.66 -12.39 5.28 -10.77 -0.06 -12.44 16 11 C 0.15 3.46 6.26 -83.79 -0.52 2.94 16 12 C -0.26 -5.79 9.97 -39.09 -0.39 -6.17 16 13 C -0.09 -2.22 10.02 -39.69 -0.40 -2.62 16 14 C -0.17 -4.46 8.66 -38.84 -0.34 -4.79 16 15 C 0.12 3.33 5.56 -106.85 -0.59 2.74 16 16 C -0.46 -12.78 9.06 -37.74 -0.34 -13.13 16 17 H 0.08 2.06 7.87 -52.49 -0.41 1.64 16 18 C 0.07 1.92 5.25 -17.34 -0.09 1.83 16 19 N -0.80 -21.48 10.81 55.55 0.60 -20.88 16 20 Si 0.91 19.47 29.57 -169.99 -5.03 14.44 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 24 C -0.21 -5.49 8.39 -38.68 -0.32 -5.81 16 25 C -0.06 -0.82 9.24 -39.18 -0.36 -1.18 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 33 H 0.13 1.20 6.42 -52.49 -0.34 0.86 16 34 H 0.40 5.74 6.87 -40.82 -0.28 5.46 16 35 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 37 H 0.12 3.32 6.17 -52.48 -0.32 3.00 16 38 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 39 H 0.11 2.91 6.43 -52.48 -0.34 2.57 16 40 H 0.14 1.99 7.65 -52.49 -0.40 1.58 16 LS Contribution 339.70 15.07 5.12 5.12 Total: -1.00 -31.82 339.70 -9.88 -41.69 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.03 Total: 9.93 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -5.56 Total: -25.84 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: 0.54 Total: -33.32 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.07 Total: -12.03 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.44 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.82 -9.88 -41.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192973512.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.441 kcal (2) G-P(sol) polarization free energy of solvation -31.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds