Wall clock time and date at job start Tue Mar 31 2020 06:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47009 * 2 1 4 4 C 1.38387 * 119.92508 * 270.01433 * 3 2 1 5 5 C 1.38341 * 120.29453 * 180.02562 * 4 3 2 6 6 C 1.37972 * 120.14860 * 359.72393 * 5 4 3 7 7 C 1.39576 * 119.85073 * 0.52955 * 6 5 4 8 8 C 1.47812 * 120.14788 * 179.74391 * 7 6 5 9 9 O 1.21557 * 119.99859 * 179.72466 * 8 7 6 10 10 N 1.34777 * 119.99978 * 359.73096 * 8 7 6 11 11 C 1.39851 * 120.00061 * 175.09403 * 10 8 7 12 12 C 1.39308 * 119.95282 * 146.31659 * 11 10 8 13 13 C 1.38482 * 120.42876 * 179.97438 * 12 11 10 14 14 C 1.37687 * 120.32495 * 359.97438 * 13 12 11 15 15 C 1.40746 * 119.88813 * 0.02562 * 14 13 12 16 16 C 1.41407 * 120.20639 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99338 * 151.88685 * 16 15 14 18 18 C 1.39933 * 120.00119 * 331.88289 * 16 15 14 19 19 N 1.30827 * 120.00109 * 348.97683 * 18 16 15 20 20 Si 1.86801 * 119.99768 * 168.97687 * 18 16 15 21 21 H 1.48497 * 109.47091 * 59.99781 * 20 18 16 22 22 H 1.48493 * 109.47246 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47163 * 299.99903 * 20 18 16 24 24 C 1.38268 * 119.94841 * 326.04110 * 11 10 8 25 25 C 1.37936 * 119.93122 * 89.99747 * 3 2 1 26 26 H 1.08995 * 109.47451 * 300.00422 * 1 2 3 27 27 H 1.09003 * 109.46770 * 60.00695 * 1 2 3 28 28 H 1.09003 * 109.46888 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47451 * 239.99578 * 2 1 3 30 30 H 1.09003 * 109.46770 * 119.99305 * 2 1 3 31 31 H 1.07998 * 119.85171 * 359.97438 * 4 3 2 32 32 H 1.08005 * 119.92565 * 180.02562 * 5 4 3 33 33 H 1.07995 * 120.07870 * 180.28004 * 6 5 4 34 34 H 0.97001 * 119.99472 * 354.81415 * 10 8 7 35 35 H 1.08001 * 119.78349 * 0.02562 * 12 11 10 36 36 H 1.08000 * 119.83783 * 179.97438 * 13 12 11 37 37 H 1.08003 * 120.05285 * 179.97438 * 14 13 12 38 38 H 0.96996 * 119.99952 * 179.97438 * 19 18 16 39 39 H 1.08004 * 120.15985 * 0.02562 * 24 11 10 40 40 H 1.07999 * 120.07235 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2621 2.0717 -1.1994 5 6 2.7237 3.3758 -1.2083 6 6 2.9526 4.0381 -0.0197 7 6 2.7280 3.3856 1.1935 8 6 2.9764 4.0869 2.4707 9 8 2.7751 3.5177 3.5258 10 7 3.4261 5.3574 2.4655 11 6 3.5635 6.0555 3.6695 12 6 4.5907 6.9842 3.8217 13 6 4.7356 7.6814 5.0094 14 6 3.8648 7.4643 6.0536 15 6 2.8222 6.5291 5.9145 16 6 1.9244 6.3005 6.9828 17 1 0.9152 5.9739 6.7794 18 6 2.3435 6.4972 8.3033 19 7 3.6118 6.6807 8.5667 20 14 1.0920 6.4980 9.6901 21 1 0.3931 5.1883 9.7268 22 1 1.7860 6.7245 10.9832 23 1 0.1019 7.5811 9.4628 24 6 2.6763 5.8270 4.7050 25 6 2.2616 2.0697 1.1954 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 2.0811 1.5591 -2.1326 32 1 2.9007 3.8784 -2.1478 33 1 3.3087 5.0576 -0.0280 34 1 3.6582 5.7862 1.6269 35 1 5.2779 7.1623 3.0078 36 1 5.5355 8.3989 5.1171 37 1 3.9821 8.0102 6.9781 38 1 3.9022 6.8174 9.4820 39 1 1.8771 5.1102 4.5867 40 1 2.0820 1.5605 2.1307 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192973512.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:20 Heat of formation + Delta-G solvation = -18.867663 kcal Electronic energy + Delta-G solvation = -22077.207086 eV Core-core repulsion = 18820.085830 eV Total energy + Delta-G solvation = -3257.121256 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.62035 -40.01635 -38.83309 -36.30965 -35.28813 -34.68893 -32.23521 -31.78025 -30.64092 -29.58925 -27.29615 -25.32705 -24.81320 -23.07074 -22.62313 -22.35252 -20.85441 -19.67568 -18.56968 -17.47210 -17.24841 -16.86134 -16.51101 -16.17726 -16.12765 -15.93006 -15.13614 -14.88280 -14.69117 -14.62507 -14.36472 -14.11620 -13.92320 -13.63331 -13.16285 -13.04086 -12.83725 -12.72797 -12.63830 -12.53248 -12.24584 -12.01874 -11.87690 -11.73286 -11.62557 -11.28953 -10.98981 -10.69747 -9.98041 -9.74483 -9.40079 -8.76125 -8.60107 -6.41532 -0.20917 0.36426 0.90906 0.98848 1.34531 1.47046 1.49204 1.89499 2.11010 2.21114 2.71611 2.85675 3.61471 3.70247 3.72992 3.92127 4.11644 4.24205 4.33437 4.43663 4.49782 4.54324 4.58810 4.63754 4.83398 4.98680 5.05124 5.06642 5.07744 5.08587 5.10318 5.18018 5.29147 5.35058 5.36890 5.41438 5.59123 5.72273 5.81850 5.94318 6.04202 6.08080 6.31523 6.56173 6.65833 6.91068 6.97241 7.21558 8.35183 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.019349 B = 0.003442 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.760118 B = 8133.963456 C = 9333.170870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.094 4.094 4 C -0.086 4.086 5 C -0.116 4.116 6 C -0.091 4.091 7 C -0.147 4.147 8 C 0.541 3.459 9 O -0.568 6.568 10 N -0.650 5.650 11 C 0.154 3.846 12 C -0.246 4.246 13 C -0.091 4.091 14 C -0.192 4.192 15 C 0.089 3.911 16 C -0.504 4.504 17 H 0.065 0.935 18 C 0.033 3.967 19 N -0.831 5.831 20 Si 0.987 3.013 21 H -0.267 1.267 22 H -0.261 1.261 23 H -0.256 1.256 24 C -0.235 4.235 25 C -0.082 4.082 26 H 0.036 0.964 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.162 0.838 32 H 0.167 0.833 33 H 0.147 0.853 34 H 0.420 0.580 35 H 0.135 0.865 36 H 0.127 0.873 37 H 0.109 0.891 38 H 0.288 0.712 39 H 0.081 0.919 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.609 -7.038 -20.652 21.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.094 4.094 4 C -0.104 4.104 5 C -0.134 4.134 6 C -0.110 4.110 7 C -0.150 4.150 8 C 0.331 3.669 9 O -0.448 6.448 10 N -0.296 5.296 11 C 0.061 3.939 12 C -0.267 4.267 13 C -0.110 4.110 14 C -0.212 4.212 15 C 0.086 3.914 16 C -0.534 4.534 17 H 0.083 0.917 18 C -0.181 4.181 19 N -0.457 5.457 20 Si 0.807 3.193 21 H -0.191 1.191 22 H -0.185 1.185 23 H -0.180 1.180 24 C -0.257 4.257 25 C -0.101 4.101 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.179 0.821 32 H 0.185 0.815 33 H 0.164 0.836 34 H 0.260 0.740 35 H 0.153 0.847 36 H 0.145 0.855 37 H 0.126 0.874 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.598 -7.417 -19.756 21.163 hybrid contribution -0.341 0.150 1.030 1.095 sum -1.939 -7.268 -18.727 20.181 Atomic orbital electron populations 1.21758 0.94267 1.02591 1.01793 1.20616 0.96531 0.91041 1.03963 1.20136 0.99325 0.97691 0.92239 1.21681 0.95741 0.94825 0.98109 1.21519 0.98491 0.94918 0.98437 1.21590 0.97744 1.00540 0.91104 1.19801 1.07120 0.96083 0.92007 1.19111 0.76504 0.81393 0.89870 1.90809 1.52263 1.67039 1.34668 1.43218 1.64915 1.12779 1.08706 1.17534 0.95415 0.94699 0.86300 1.20510 1.01081 1.05180 0.99914 1.20875 0.98305 0.99055 0.92769 1.21402 0.99502 1.01184 0.99147 1.17836 0.92720 0.89177 0.91673 1.19748 0.99002 1.42742 0.91901 0.91725 1.26747 0.97770 0.91356 1.02227 1.69842 1.16899 1.36067 1.22940 0.85200 0.78276 0.79805 0.76039 1.19134 1.18496 1.18020 1.20948 1.02978 1.05064 0.96726 1.21172 0.96766 0.93219 0.98966 0.94434 0.91636 0.90854 0.88261 0.91580 0.82065 0.81515 0.83556 0.74035 0.84745 0.85528 0.87355 0.90112 0.90027 0.87308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.89 71.98 0.71 -1.46 16 2 C -0.08 -1.30 6.06 29.85 0.18 -1.12 16 3 C -0.09 -1.89 5.13 -19.90 -0.10 -1.99 16 4 C -0.09 -1.25 9.69 22.33 0.22 -1.04 16 5 C -0.12 -1.68 10.03 22.23 0.22 -1.46 16 6 C -0.09 -1.87 9.54 22.53 0.21 -1.66 16 7 C -0.15 -4.41 5.87 -20.09 -0.12 -4.53 16 8 C 0.54 21.81 7.51 86.78 0.65 22.46 16 9 O -0.57 -29.29 14.05 -3.90 -0.05 -29.34 16 10 N -0.65 -24.28 5.28 -306.27 -1.62 -25.89 16 11 C 0.15 7.24 6.26 38.13 0.24 7.47 16 12 C -0.25 -10.59 9.97 22.59 0.23 -10.36 16 13 C -0.09 -4.25 10.02 22.20 0.22 -4.03 16 14 C -0.19 -10.61 8.66 22.75 0.20 -10.41 16 15 C 0.09 5.27 5.56 -21.31 -0.12 5.15 16 16 C -0.50 -30.10 9.06 23.46 0.21 -29.88 16 17 H 0.06 3.81 7.87 -2.91 -0.02 3.79 16 18 C 0.03 1.77 5.25 85.25 0.45 2.22 16 19 N -0.83 -46.20 10.81 21.82 0.24 -45.97 16 20 Si 0.99 41.28 29.57 68.60 2.03 43.31 16 21 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 22 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 23 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 24 C -0.24 -13.29 8.39 22.86 0.19 -13.10 16 25 C -0.08 -2.36 9.24 22.53 0.21 -2.15 16 26 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 1.02 8.08 -2.39 -0.02 1.00 16 30 H 0.07 1.13 8.08 -2.39 -0.02 1.11 16 31 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 32 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 33 H 0.15 2.27 6.42 -2.91 -0.02 2.25 16 34 H 0.42 11.30 6.87 -92.71 -0.64 10.66 16 35 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 36 H 0.13 4.95 8.06 -2.91 -0.02 4.93 16 37 H 0.11 6.17 6.17 -2.91 -0.02 6.15 16 38 H 0.29 14.42 8.30 -92.71 -0.77 13.65 16 39 H 0.08 4.90 6.43 -2.91 -0.02 4.88 16 40 H 0.11 3.59 7.65 -2.91 -0.02 3.57 16 Total: -1.00 -76.71 339.70 4.82 -71.89 By element: Atomic # 1 Polarization: 31.47 SS G_CDS: 0.42 Total: 31.89 kcal Atomic # 6 Polarization: -49.70 SS G_CDS: 3.80 Total: -45.89 kcal Atomic # 7 Polarization: -70.48 SS G_CDS: -1.38 Total: -71.86 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.05 Total: -29.34 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -76.71 4.82 -71.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192973512.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.024 kcal (2) G-P(sol) polarization free energy of solvation -76.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds