Wall clock time and date at job start Tue Mar 31 2020 07:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53008 * 109.47005 * 2 1 4 4 C 1.52996 * 109.46981 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47128 * 180.02562 * 4 3 2 6 6 O 1.45199 * 109.47317 * 180.02562 * 5 4 3 7 7 C 1.34646 * 117.00165 * 180.02562 * 6 5 4 8 8 O 1.21518 * 120.00005 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00192 * 179.97438 * 7 6 5 10 10 C 1.40039 * 120.00072 * 175.68025 * 9 7 6 11 11 C 1.39365 * 119.91188 * 215.20725 * 10 9 7 12 12 C 1.38370 * 120.46831 * 180.02562 * 11 10 9 13 13 C 1.37999 * 120.29168 * 359.97438 * 12 11 10 14 14 F 1.35094 * 120.09996 * 179.97438 * 13 12 11 15 15 C 1.41011 * 119.80910 * 359.97438 * 13 12 11 16 16 C 1.41295 * 120.22793 * 180.02562 * 15 13 12 17 17 H 1.07994 * 120.00148 * 324.95824 * 16 15 13 18 18 C 1.39930 * 119.99755 * 145.23952 * 16 15 13 19 19 N 1.30847 * 119.99811 * 4.44394 * 18 16 15 20 20 Si 1.86797 * 119.99976 * 184.44283 * 18 16 15 21 21 H 1.48503 * 109.46909 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46863 * 119.99875 * 20 18 16 23 23 H 1.48494 * 109.47419 * 239.99845 * 20 18 16 24 24 C 1.38140 * 119.91012 * 35.49482 * 10 9 7 25 25 H 1.09004 * 109.46779 * 299.99836 * 1 2 3 26 26 H 1.08989 * 109.47185 * 59.99931 * 1 2 3 27 27 H 1.08993 * 109.46641 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46941 * 239.99890 * 2 1 3 29 29 H 1.08997 * 109.47044 * 119.99786 * 2 1 3 30 30 H 1.09002 * 109.46518 * 60.00186 * 3 2 1 31 31 H 1.09000 * 109.46774 * 300.00235 * 3 2 1 32 32 H 1.09007 * 109.47280 * 60.00211 * 4 3 2 33 33 H 1.09005 * 109.47507 * 300.00238 * 4 3 2 34 34 H 1.08999 * 109.47013 * 59.99670 * 5 4 3 35 35 H 1.09005 * 109.47118 * 300.00473 * 5 4 3 36 36 H 0.96998 * 120.00168 * 355.69156 * 9 7 6 37 37 H 1.07991 * 119.76303 * 0.03164 * 11 10 9 38 38 H 1.08006 * 119.85430 * 179.97438 * 12 11 10 39 39 H 0.97005 * 120.00132 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.14039 * 359.97329 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8851 0.0013 6 8 5.5320 2.8851 0.0013 7 6 6.1433 4.0848 0.0024 8 8 5.4815 5.1039 0.0028 9 7 7.4892 4.1554 0.0029 10 6 8.1251 5.3998 -0.0873 11 6 9.3231 5.5187 -0.7894 12 6 9.9616 6.7426 -0.8854 13 6 9.4175 7.8604 -0.2863 14 9 10.0444 9.0532 -0.3821 15 6 8.2053 7.7539 0.4261 16 6 7.6400 8.8928 1.0425 17 1 8.2810 9.6471 1.4743 18 6 6.2497 9.0404 1.0985 19 7 5.4721 8.0844 0.6587 20 14 5.5038 10.6022 1.8012 21 1 6.5898 11.5216 2.2262 22 1 4.6730 11.2643 0.7635 23 1 4.6557 10.2626 2.9718 24 6 7.5664 6.5049 0.5249 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9338 0.9286 -0.8892 33 1 3.9331 0.9288 0.8909 34 1 3.7163 3.3986 0.8912 35 1 3.7170 3.3992 -0.8887 36 1 8.0174 3.3443 0.0657 37 1 9.7561 4.6495 -1.2619 38 1 10.8898 6.8234 -1.4316 39 1 4.5082 8.1868 0.6972 40 1 6.6401 6.4112 1.0724 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193775362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:16 Heat of formation + Delta-G solvation = -125.925994 kcal Electronic energy + Delta-G solvation = -23086.691389 eV Core-core repulsion = 19394.158511 eV Total energy + Delta-G solvation = -3692.532878 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -47.19524 -40.08434 -37.88483 -36.46348 -35.44222 -34.27876 -33.17894 -31.60670 -29.73107 -28.07963 -26.29104 -25.34095 -22.63940 -21.70343 -21.29569 -21.16877 -19.96640 -18.37328 -17.35669 -16.56011 -16.25896 -15.98138 -15.60025 -15.24432 -14.98556 -14.31827 -14.05119 -13.94877 -13.88594 -13.64255 -12.97765 -12.77954 -12.70894 -12.47385 -11.88029 -11.79386 -11.63908 -11.48041 -11.40730 -11.34391 -11.14003 -11.00872 -10.98942 -10.79678 -10.61793 -10.38513 -10.15829 -9.73852 -9.44956 -9.18073 -9.02973 -7.45170 -6.94202 -6.50404 -4.39825 2.42069 2.68093 2.80260 3.11604 3.14432 3.19862 3.54546 4.00531 4.40660 4.65435 4.66757 4.77501 4.92106 4.99438 5.13638 5.37864 5.39709 5.42781 5.52937 5.60870 5.62606 5.78275 5.80751 5.87392 5.92067 6.07914 6.09310 6.11590 6.36543 6.61307 6.72642 6.92554 7.02001 7.25216 7.42107 7.52442 7.70905 8.02797 8.09968 8.29814 8.53261 8.84769 8.85883 9.01679 10.30542 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015839 B = 0.003659 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.328252 B = 7650.876989 C = 9299.600510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.118 4.118 4 C -0.119 4.119 5 C 0.088 3.912 6 O -0.381 6.381 7 C 0.627 3.373 8 O -0.513 6.513 9 N -0.648 5.648 10 C 0.142 3.858 11 C -0.231 4.231 12 C -0.114 4.114 13 C -0.029 4.029 14 F -0.162 7.162 15 C 0.090 3.910 16 C -0.456 4.456 17 H 0.081 0.919 18 C 0.066 3.934 19 N -0.769 5.769 20 Si 0.914 3.086 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.274 1.274 24 C -0.130 4.130 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.403 0.597 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.280 0.720 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.308 -13.840 -0.388 15.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.156 4.156 4 C -0.156 4.156 5 C 0.013 3.987 6 O -0.297 6.297 7 C 0.378 3.622 8 O -0.396 6.396 9 N -0.299 5.299 10 C 0.051 3.949 11 C -0.252 4.252 12 C -0.134 4.134 13 C -0.050 4.050 14 F -0.142 7.142 15 C 0.086 3.914 16 C -0.485 4.485 17 H 0.099 0.901 18 C -0.153 4.153 19 N -0.393 5.393 20 Si 0.739 3.261 21 H -0.185 1.185 22 H -0.199 1.199 23 H -0.200 1.200 24 C -0.152 4.152 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.237 0.763 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.092 0.908 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.014 -13.394 -0.430 15.125 hybrid contribution -0.087 0.481 0.117 0.503 sum -7.101 -12.913 -0.313 14.740 Atomic orbital electron populations 1.21782 0.95826 1.01538 1.01964 1.21505 0.95853 0.96526 1.02166 1.21530 0.93989 0.97287 1.02792 1.21588 0.95394 0.95157 1.03488 1.22882 0.75304 0.97590 1.02877 1.86146 1.23519 1.32274 1.87781 1.18282 0.83713 0.82178 0.77978 1.91245 1.63700 1.33104 1.51601 1.41902 1.02779 1.09203 1.75981 1.17476 0.93743 0.83577 1.00138 1.19861 0.98993 0.96887 1.09501 1.20238 0.99614 0.91894 1.01666 1.18037 0.98297 0.80347 1.08312 1.91271 1.82099 1.45346 1.95446 1.17557 0.89245 0.93589 0.90988 1.19439 0.91648 1.04663 1.32772 0.90122 1.25966 0.97424 0.98049 0.93848 1.69873 1.05753 1.30535 1.33101 0.86158 0.79386 0.81570 0.79005 1.18494 1.19896 1.19958 1.21723 1.02864 0.89095 1.01504 0.92675 0.92679 0.92822 0.91916 0.91904 0.91480 0.91496 0.90959 0.90938 0.91255 0.91337 0.76311 0.88066 0.87621 0.90823 0.82326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.12 -0.90 5.93 -26.72 -0.16 -1.06 16 3 C -0.12 -1.01 5.21 -26.73 -0.14 -1.15 16 4 C -0.12 -1.19 5.59 -26.73 -0.15 -1.34 16 5 C 0.09 1.22 5.47 37.16 0.20 1.42 16 6 O -0.38 -6.29 10.27 -40.34 -0.41 -6.70 16 7 C 0.63 12.66 8.59 54.05 0.46 13.13 16 8 O -0.51 -12.39 13.51 -19.29 -0.26 -12.65 16 9 N -0.65 -12.40 5.34 -14.30 -0.08 -12.48 16 10 C 0.14 3.24 6.29 -83.72 -0.53 2.71 16 11 C -0.23 -4.89 9.97 -39.11 -0.39 -5.28 16 12 C -0.11 -2.56 10.00 -39.62 -0.40 -2.96 16 13 C -0.03 -0.76 7.31 -38.62 -0.28 -1.04 16 14 F -0.16 -4.14 16.82 2.25 0.04 -4.10 16 15 C 0.09 2.48 5.55 -106.78 -0.59 1.88 16 16 C -0.46 -12.55 8.69 -37.79 -0.33 -12.88 16 17 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 18 C 0.07 1.73 5.42 -17.34 -0.09 1.63 16 19 N -0.77 -20.75 10.54 55.55 0.59 -20.16 16 20 Si 0.91 19.58 29.56 -169.99 -5.03 14.55 16 21 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 24 C -0.13 -3.44 7.30 -38.71 -0.28 -3.72 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.37 8.14 -51.94 -0.42 -0.05 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.40 6.10 8.93 -40.82 -0.36 5.74 16 37 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 38 H 0.11 2.05 8.06 -52.48 -0.42 1.63 16 39 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 40 H 0.16 4.47 4.35 -52.49 -0.23 4.25 16 LS Contribution 343.67 15.07 5.18 5.18 Total: -1.00 -30.35 343.67 -7.91 -38.26 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.63 Total: 7.43 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -2.30 Total: -9.33 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.51 Total: -32.64 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.67 Total: -19.35 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.04 Total: -4.10 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.55 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.35 -7.91 -38.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193775362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.665 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds