Wall clock time and date at job start Tue Mar 31 2020 07:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53008 * 109.47005 * 2 1 4 4 C 1.52996 * 109.46981 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47128 * 180.02562 * 4 3 2 6 6 O 1.45199 * 109.47317 * 180.02562 * 5 4 3 7 7 C 1.34646 * 117.00165 * 180.02562 * 6 5 4 8 8 O 1.21518 * 120.00005 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00192 * 179.97438 * 7 6 5 10 10 C 1.40039 * 120.00072 * 175.68025 * 9 7 6 11 11 C 1.39365 * 119.91188 * 215.20725 * 10 9 7 12 12 C 1.38370 * 120.46831 * 180.02562 * 11 10 9 13 13 C 1.37999 * 120.29168 * 359.97438 * 12 11 10 14 14 F 1.35094 * 120.09996 * 179.97438 * 13 12 11 15 15 C 1.41011 * 119.80910 * 359.97438 * 13 12 11 16 16 C 1.41295 * 120.22793 * 180.02562 * 15 13 12 17 17 H 1.07994 * 120.00148 * 324.95824 * 16 15 13 18 18 C 1.39930 * 119.99755 * 145.23952 * 16 15 13 19 19 N 1.30847 * 119.99811 * 4.44394 * 18 16 15 20 20 Si 1.86797 * 119.99976 * 184.44283 * 18 16 15 21 21 H 1.48503 * 109.46909 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46863 * 119.99875 * 20 18 16 23 23 H 1.48494 * 109.47419 * 239.99845 * 20 18 16 24 24 C 1.38140 * 119.91012 * 35.49482 * 10 9 7 25 25 H 1.09004 * 109.46779 * 299.99836 * 1 2 3 26 26 H 1.08989 * 109.47185 * 59.99931 * 1 2 3 27 27 H 1.08993 * 109.46641 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46941 * 239.99890 * 2 1 3 29 29 H 1.08997 * 109.47044 * 119.99786 * 2 1 3 30 30 H 1.09002 * 109.46518 * 60.00186 * 3 2 1 31 31 H 1.09000 * 109.46774 * 300.00235 * 3 2 1 32 32 H 1.09007 * 109.47280 * 60.00211 * 4 3 2 33 33 H 1.09005 * 109.47507 * 300.00238 * 4 3 2 34 34 H 1.08999 * 109.47013 * 59.99670 * 5 4 3 35 35 H 1.09005 * 109.47118 * 300.00473 * 5 4 3 36 36 H 0.96998 * 120.00168 * 355.69156 * 9 7 6 37 37 H 1.07991 * 119.76303 * 0.03164 * 11 10 9 38 38 H 1.08006 * 119.85430 * 179.97438 * 12 11 10 39 39 H 0.97005 * 120.00132 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.14039 * 359.97329 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0800 2.8851 0.0013 6 8 5.5320 2.8851 0.0013 7 6 6.1433 4.0848 0.0024 8 8 5.4815 5.1039 0.0028 9 7 7.4892 4.1554 0.0029 10 6 8.1251 5.3998 -0.0873 11 6 9.3231 5.5187 -0.7894 12 6 9.9616 6.7426 -0.8854 13 6 9.4175 7.8604 -0.2863 14 9 10.0444 9.0532 -0.3821 15 6 8.2053 7.7539 0.4261 16 6 7.6400 8.8928 1.0425 17 1 8.2810 9.6471 1.4743 18 6 6.2497 9.0404 1.0985 19 7 5.4721 8.0844 0.6587 20 14 5.5038 10.6022 1.8012 21 1 6.5898 11.5216 2.2262 22 1 4.6730 11.2643 0.7635 23 1 4.6557 10.2626 2.9718 24 6 7.5664 6.5049 0.5249 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3632 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9338 0.9286 -0.8892 33 1 3.9331 0.9288 0.8909 34 1 3.7163 3.3986 0.8912 35 1 3.7170 3.3992 -0.8887 36 1 8.0174 3.3443 0.0657 37 1 9.7561 4.6495 -1.2619 38 1 10.8898 6.8234 -1.4316 39 1 4.5082 8.1868 0.6972 40 1 6.6401 6.4112 1.0724 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193775362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:16 Heat of formation + Delta-G solvation = -143.090112 kcal Electronic energy + Delta-G solvation = -23087.435681 eV Core-core repulsion = 19394.158511 eV Total energy + Delta-G solvation = -3693.277170 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.17100 -41.66626 -39.54420 -37.76459 -36.51751 -36.09385 -35.00043 -32.45726 -31.64389 -29.82127 -27.40747 -27.11998 -24.05614 -23.24069 -22.64718 -22.02476 -21.61530 -20.02106 -19.14457 -18.02425 -17.86957 -17.76724 -16.95746 -16.79447 -16.45192 -16.03058 -15.95284 -15.07739 -14.91227 -14.80015 -14.51458 -14.38242 -13.88474 -13.73778 -13.58172 -13.48014 -13.31480 -12.95000 -12.78175 -12.51369 -12.48928 -12.22277 -12.14080 -12.03765 -11.75592 -11.57492 -11.52142 -11.37518 -11.24072 -11.05851 -10.81261 -9.37384 -8.79716 -8.40454 -6.43462 0.61741 0.92314 1.17854 1.35482 1.43149 1.51687 1.89625 2.21604 2.74807 3.20214 3.47860 3.88805 3.89709 4.04371 4.10627 4.21744 4.34009 4.35964 4.41270 4.62119 4.63849 4.75469 4.82164 4.95972 5.00011 5.00789 5.04634 5.07052 5.16089 5.26848 5.28543 5.40303 5.44416 5.50376 5.61512 5.73679 5.80592 6.11542 6.22848 6.53524 6.58779 6.87148 6.89384 7.45882 8.38876 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015839 B = 0.003659 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.328252 B = 7650.876989 C = 9299.600510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.116 4.116 4 C -0.106 4.106 5 C 0.082 3.918 6 O -0.367 6.367 7 C 0.626 3.374 8 O -0.556 6.556 9 N -0.634 5.634 10 C 0.145 3.855 11 C -0.208 4.208 12 C -0.109 4.109 13 C -0.057 4.057 14 F -0.168 7.168 15 C 0.057 3.943 16 C -0.496 4.496 17 H 0.070 0.930 18 C 0.025 3.975 19 N -0.800 5.800 20 Si 0.985 3.015 21 H -0.261 1.261 22 H -0.267 1.267 23 H -0.263 1.263 24 C -0.154 4.154 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.425 0.575 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.282 0.718 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.983 -15.854 -1.068 16.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.154 4.154 4 C -0.144 4.144 5 C 0.007 3.993 6 O -0.282 6.282 7 C 0.379 3.621 8 O -0.442 6.442 9 N -0.287 5.287 10 C 0.052 3.948 11 C -0.229 4.229 12 C -0.128 4.128 13 C -0.077 4.077 14 F -0.148 7.148 15 C 0.053 3.947 16 C -0.526 4.526 17 H 0.088 0.912 18 C -0.191 4.191 19 N -0.425 5.425 20 Si 0.806 3.194 21 H -0.184 1.184 22 H -0.192 1.192 23 H -0.188 1.188 24 C -0.176 4.176 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.263 0.737 37 H 0.168 0.832 38 H 0.161 0.839 39 H 0.093 0.907 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.668 -15.476 -1.112 16.888 hybrid contribution -0.126 0.925 0.264 0.970 sum -6.794 -14.551 -0.848 16.081 Atomic orbital electron populations 1.21790 0.95443 1.02110 1.01867 1.21488 0.96174 0.95421 1.02696 1.21535 0.92822 0.98385 1.02675 1.21573 0.96179 0.92307 1.04330 1.23208 0.73702 1.00233 1.02118 1.86177 1.24989 1.29891 1.87129 1.18455 0.83904 0.82549 0.77172 1.91242 1.64721 1.34928 1.53320 1.41693 1.02732 1.08954 1.75350 1.17578 0.94127 0.83993 0.99079 1.20367 0.97414 0.98036 1.07061 1.20665 1.00633 0.90995 1.00516 1.18374 0.98468 0.81341 1.09530 1.91241 1.82039 1.45917 1.95569 1.17904 0.90576 0.94172 0.92034 1.19580 0.92665 1.05292 1.35092 0.91216 1.26785 0.97262 1.01211 0.93800 1.69994 1.05849 1.32264 1.34390 0.85116 0.78408 0.77350 0.78558 1.18426 1.19187 1.18754 1.21584 1.02698 0.90241 1.03094 0.92835 0.92773 0.91933 0.91345 0.91415 0.91731 0.91626 0.90012 0.90122 0.92222 0.92093 0.73656 0.83206 0.83921 0.90735 0.84667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 71.98 0.71 -1.14 16 2 C -0.12 -1.53 5.93 30.60 0.18 -1.35 16 3 C -0.12 -1.83 5.21 30.60 0.16 -1.67 16 4 C -0.11 -1.95 5.59 30.59 0.17 -1.78 16 5 C 0.08 2.22 5.47 71.98 0.39 2.61 16 6 O -0.37 -11.68 10.27 -55.55 -0.57 -12.25 16 7 C 0.63 25.04 8.59 129.79 1.11 26.16 16 8 O -0.56 -27.50 13.51 19.78 0.27 -27.24 16 9 N -0.63 -23.17 5.34 -429.55 -2.30 -25.47 16 10 C 0.14 6.43 6.29 38.08 0.24 6.67 16 11 C -0.21 -8.09 9.97 22.57 0.22 -7.87 16 12 C -0.11 -4.60 10.00 22.24 0.22 -4.38 16 13 C -0.06 -2.92 7.31 22.89 0.17 -2.76 16 14 F -0.17 -8.70 16.82 44.97 0.76 -7.95 16 15 C 0.06 3.22 5.55 -21.26 -0.12 3.10 16 16 C -0.50 -28.66 8.69 23.43 0.20 -28.46 16 17 H 0.07 3.99 7.84 -2.91 -0.02 3.97 16 18 C 0.02 1.34 5.42 85.25 0.46 1.81 16 19 N -0.80 -45.07 10.54 21.82 0.23 -44.84 16 20 Si 0.98 41.49 29.56 68.60 2.03 43.51 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 22 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 24 C -0.15 -8.34 7.30 22.83 0.17 -8.17 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.43 11.54 8.93 -92.71 -0.83 10.71 16 37 H 0.15 4.43 8.06 -2.92 -0.02 4.40 16 38 H 0.14 4.95 8.06 -2.91 -0.02 4.92 16 39 H 0.28 14.79 8.30 -92.70 -0.77 14.02 16 40 H 0.14 7.98 4.35 -2.91 -0.01 7.97 16 Total: -1.00 -68.72 343.67 4.95 -63.77 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 0.23 Total: 27.67 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 4.30 Total: -17.21 kcal Atomic # 7 Polarization: -68.25 SS G_CDS: -2.07 Total: -70.31 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -0.30 Total: -39.48 kcal Atomic # 9 Polarization: -8.70 SS G_CDS: 0.76 Total: -7.95 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Total: -68.72 4.95 -63.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193775362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.318 kcal (2) G-P(sol) polarization free energy of solvation -68.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds