Wall clock time and date at job start Tue Mar 31 2020 08:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46910 * 2 1 4 4 H 1.08996 * 109.47237 * 54.99979 * 3 2 1 5 5 C 1.53002 * 109.46817 * 294.99774 * 3 2 1 6 6 C 1.53002 * 109.46874 * 174.99872 * 3 2 1 7 7 O 1.45204 * 109.47077 * 184.99726 * 6 3 2 8 8 C 1.34644 * 117.00228 * 179.97438 * 7 6 3 9 9 O 1.21520 * 119.99621 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00381 * 180.27585 * 8 7 6 11 11 C 1.40031 * 120.00242 * 174.55536 * 10 8 7 12 12 C 1.39362 * 119.91140 * 146.38260 * 11 10 8 13 13 C 1.38368 * 120.46956 * 179.97438 * 12 11 10 14 14 C 1.38005 * 120.28873 * 0.02562 * 13 12 11 15 15 F 1.35100 * 120.09331 * 179.97438 * 14 13 12 16 16 C 1.41002 * 119.81112 * 359.97438 * 14 13 12 17 17 C 1.41290 * 120.23102 * 180.02562 * 16 14 13 18 18 H 1.08004 * 119.99847 * 331.50121 * 17 16 14 19 19 C 1.39922 * 120.00182 * 151.49376 * 17 16 14 20 20 N 1.30852 * 119.99934 * 348.98894 * 19 17 16 21 21 Si 1.86800 * 119.99978 * 168.98162 * 19 17 16 22 22 H 1.48496 * 109.47192 * 94.99256 * 21 19 17 23 23 H 1.48505 * 109.47099 * 214.99570 * 21 19 17 24 24 H 1.48498 * 109.47271 * 334.99243 * 21 19 17 25 25 C 1.38135 * 119.91103 * 326.10626 * 11 10 8 26 26 H 1.09000 * 109.47066 * 60.00016 * 1 2 3 27 27 H 1.08997 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46826 * 300.00190 * 1 2 3 29 29 H 1.08995 * 109.46826 * 239.99810 * 2 1 3 30 30 H 1.08994 * 109.46891 * 119.99590 * 2 1 3 31 31 H 1.08996 * 109.47291 * 60.00607 * 5 3 2 32 32 H 1.09011 * 109.46853 * 180.02562 * 5 3 2 33 33 H 1.08996 * 109.47385 * 300.00115 * 5 3 2 34 34 H 1.08998 * 109.47153 * 65.00318 * 6 3 2 35 35 H 1.08989 * 109.47082 * 304.99841 * 6 3 2 36 36 H 0.97000 * 119.99514 * 354.55960 * 10 8 7 37 37 H 1.07993 * 119.76510 * 359.97438 * 12 11 10 38 38 H 1.08005 * 119.85279 * 179.97438 * 13 12 11 39 39 H 0.96999 * 119.99811 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.14500 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5649 1.4443 0.1258 7 8 4.0391 2.8116 0.2447 8 6 5.3683 2.9893 0.3652 9 8 6.1117 2.0281 0.3703 10 7 5.8738 4.2329 0.4852 11 6 7.2417 4.4126 0.7246 12 6 7.9019 5.5167 0.1886 13 6 9.2532 5.7059 0.4183 14 6 9.9628 4.8012 1.1816 15 9 11.2822 4.9895 1.4029 16 6 9.3069 3.6799 1.7297 17 6 10.0246 2.7484 2.5130 18 1 11.0802 2.5980 2.3409 19 6 9.3679 2.0209 3.5117 20 7 8.1526 2.3493 3.8683 21 14 10.2262 0.5808 4.3356 22 1 10.8722 1.0418 5.5907 23 1 9.2303 -0.4749 4.6502 24 1 11.2585 0.0306 3.4208 25 6 7.9319 3.4981 1.4962 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 0.5490 2.1252 -1.3970 32 1 1.9990 3.1541 -1.3076 33 1 2.0699 1.5875 -2.1492 34 1 4.0030 0.9837 -0.7596 35 1 3.8570 0.8801 1.0113 36 1 5.2900 5.0035 0.4057 37 1 7.3550 6.2297 -0.4103 38 1 9.7550 6.5648 -0.0023 39 1 7.6975 1.8452 4.5609 40 1 7.4187 2.6452 1.9154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001194811276.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:04 Heat of formation + Delta-G solvation = -127.230788 kcal Electronic energy + Delta-G solvation = -23433.519024 eV Core-core repulsion = 19740.929566 eV Total energy + Delta-G solvation = -3692.589458 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -47.20413 -40.22520 -38.08098 -36.85629 -35.39681 -34.39093 -33.27403 -30.33641 -29.80264 -28.13364 -26.85969 -25.43944 -23.79504 -22.06146 -21.32458 -20.27504 -19.96130 -18.47541 -17.47537 -16.45631 -16.31350 -16.02945 -15.38448 -15.21869 -14.93245 -14.66753 -14.37384 -13.97359 -13.71292 -13.47342 -13.02105 -12.75529 -12.54126 -12.26959 -12.13706 -11.94845 -11.84990 -11.72112 -11.65037 -11.20816 -11.04546 -11.02064 -10.86556 -10.76220 -10.51721 -10.41367 -10.26453 -9.86031 -9.73948 -9.39953 -8.99059 -7.56649 -6.95574 -6.75453 -4.44998 2.38114 2.61607 2.76060 3.07885 3.09964 3.15111 3.44892 3.92774 4.39979 4.54505 4.64105 4.68049 4.95732 5.07466 5.26401 5.29857 5.44648 5.45675 5.52533 5.61635 5.74952 5.79561 5.82746 5.86773 5.88811 6.05072 6.13605 6.19783 6.35050 6.52398 6.67313 6.88102 6.95877 7.14439 7.38425 7.48703 7.63464 7.97590 8.03178 8.19331 8.45908 8.74395 8.78607 8.90144 10.14466 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015525 B = 0.004144 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.122091 B = 6755.528805 C = 8330.412843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.092 4.092 4 H 0.082 0.918 5 C -0.148 4.148 6 C 0.091 3.909 7 O -0.374 6.374 8 C 0.641 3.359 9 O -0.546 6.546 10 N -0.643 5.643 11 C 0.146 3.854 12 C -0.236 4.236 13 C -0.108 4.108 14 C -0.036 4.036 15 F -0.163 7.163 16 C 0.095 3.905 17 C -0.447 4.447 18 H 0.084 0.916 19 C 0.074 3.926 20 N -0.790 5.790 21 Si 0.917 3.083 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.259 1.259 25 C -0.132 4.132 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.405 0.595 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.282 0.718 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.793 -1.765 -5.363 14.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.110 4.110 4 H 0.100 0.900 5 C -0.205 4.205 6 C 0.016 3.984 7 O -0.289 6.289 8 C 0.394 3.606 9 O -0.432 6.432 10 N -0.293 5.293 11 C 0.055 3.945 12 C -0.257 4.257 13 C -0.128 4.128 14 C -0.056 4.056 15 F -0.142 7.142 16 C 0.091 3.909 17 C -0.476 4.476 18 H 0.102 0.898 19 C -0.144 4.144 20 N -0.415 5.415 21 Si 0.741 3.259 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.183 1.183 25 C -0.154 4.154 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.240 0.760 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.093 0.907 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.663 -2.398 -5.177 14.806 hybrid contribution 0.243 -0.231 0.429 0.544 sum -13.420 -2.628 -4.747 14.476 Atomic orbital electron populations 1.21790 0.95286 1.01678 1.02083 1.21499 0.96290 0.95206 1.02640 1.21227 0.92812 0.97094 0.99899 0.90008 1.21865 1.01095 1.01208 0.96312 1.22986 0.93569 0.79224 1.02589 1.86157 1.23157 1.32826 1.86777 1.18096 0.80777 0.84714 0.77038 1.91058 1.58672 1.39560 1.53937 1.41939 1.08555 1.05159 1.73653 1.17403 0.80042 0.98047 0.99003 1.19797 0.93974 1.01579 1.10364 1.20229 0.93889 0.98559 1.00104 1.17909 0.78263 0.99005 1.10447 1.91270 1.33229 1.95351 1.94326 1.17491 0.92041 0.90202 0.91179 1.19514 0.97150 1.17423 1.13481 0.89766 1.25917 0.94678 0.97527 0.96317 1.69769 1.11904 1.35678 1.24161 0.86153 0.79919 0.80244 0.79618 1.19420 1.19948 1.18259 1.21346 0.94504 1.00797 0.98740 0.92352 0.92643 0.92612 0.91538 0.91492 0.92370 0.91901 0.92717 0.91300 0.91146 0.76027 0.87978 0.87520 0.90716 0.83321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.67 37.16 0.36 -0.72 16 2 C -0.12 -1.01 5.40 -26.73 -0.14 -1.16 16 3 C -0.09 -0.93 2.63 -90.62 -0.24 -1.17 16 4 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 5 C -0.15 -1.38 8.85 37.16 0.33 -1.05 16 6 C 0.09 1.25 4.85 37.16 0.18 1.43 16 7 O -0.37 -6.11 9.81 -40.33 -0.40 -6.50 16 8 C 0.64 12.94 8.48 54.06 0.46 13.40 16 9 O -0.55 -13.11 13.85 -19.29 -0.27 -13.38 16 10 N -0.64 -12.43 5.35 -14.30 -0.08 -12.51 16 11 C 0.15 3.38 6.27 -83.73 -0.52 2.85 16 12 C -0.24 -5.01 9.96 -39.12 -0.39 -5.40 16 13 C -0.11 -2.43 10.00 -39.62 -0.40 -2.82 16 14 C -0.04 -0.92 7.31 -38.62 -0.28 -1.20 16 15 F -0.16 -4.14 16.75 2.25 0.04 -4.10 16 16 C 0.09 2.62 5.56 -106.78 -0.59 2.03 16 17 C -0.45 -12.35 8.76 -37.79 -0.33 -12.69 16 18 H 0.08 2.28 7.76 -52.48 -0.41 1.87 16 19 C 0.07 1.91 5.25 -17.34 -0.09 1.82 16 20 N -0.79 -20.92 10.82 55.55 0.60 -20.32 16 21 Si 0.92 19.41 29.57 -169.99 -5.03 14.38 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 25 C -0.13 -3.54 7.25 -38.71 -0.28 -3.82 16 26 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 32 H 0.06 0.65 7.82 -51.92 -0.41 0.24 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.41 6.22 8.93 -40.82 -0.36 5.86 16 37 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.11 2.07 8.06 -52.48 -0.42 1.64 16 39 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 40 H 0.15 4.25 4.56 -52.49 -0.24 4.01 16 LS Contribution 339.44 15.07 5.12 5.12 Total: -1.00 -30.41 339.44 -7.42 -37.83 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.46 Total: 7.99 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -1.95 Total: -8.50 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.52 Total: -32.83 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.66 Total: -19.88 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.04 Total: -4.10 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.41 -7.42 -37.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194811276.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.401 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds