Wall clock time and date at job start Tue Mar 31 2020 08:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46910 * 2 1 4 4 H 1.08996 * 109.47237 * 54.99979 * 3 2 1 5 5 C 1.53002 * 109.46817 * 294.99774 * 3 2 1 6 6 C 1.53002 * 109.46874 * 174.99872 * 3 2 1 7 7 O 1.45204 * 109.47077 * 184.99726 * 6 3 2 8 8 C 1.34644 * 117.00228 * 179.97438 * 7 6 3 9 9 O 1.21520 * 119.99621 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00381 * 180.27585 * 8 7 6 11 11 C 1.40031 * 120.00242 * 174.55536 * 10 8 7 12 12 C 1.39362 * 119.91140 * 146.38260 * 11 10 8 13 13 C 1.38368 * 120.46956 * 179.97438 * 12 11 10 14 14 C 1.38005 * 120.28873 * 0.02562 * 13 12 11 15 15 F 1.35100 * 120.09331 * 179.97438 * 14 13 12 16 16 C 1.41002 * 119.81112 * 359.97438 * 14 13 12 17 17 C 1.41290 * 120.23102 * 180.02562 * 16 14 13 18 18 H 1.08004 * 119.99847 * 331.50121 * 17 16 14 19 19 C 1.39922 * 120.00182 * 151.49376 * 17 16 14 20 20 N 1.30852 * 119.99934 * 348.98894 * 19 17 16 21 21 Si 1.86800 * 119.99978 * 168.98162 * 19 17 16 22 22 H 1.48496 * 109.47192 * 94.99256 * 21 19 17 23 23 H 1.48505 * 109.47099 * 214.99570 * 21 19 17 24 24 H 1.48498 * 109.47271 * 334.99243 * 21 19 17 25 25 C 1.38135 * 119.91103 * 326.10626 * 11 10 8 26 26 H 1.09000 * 109.47066 * 60.00016 * 1 2 3 27 27 H 1.08997 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46826 * 300.00190 * 1 2 3 29 29 H 1.08995 * 109.46826 * 239.99810 * 2 1 3 30 30 H 1.08994 * 109.46891 * 119.99590 * 2 1 3 31 31 H 1.08996 * 109.47291 * 60.00607 * 5 3 2 32 32 H 1.09011 * 109.46853 * 180.02562 * 5 3 2 33 33 H 1.08996 * 109.47385 * 300.00115 * 5 3 2 34 34 H 1.08998 * 109.47153 * 65.00318 * 6 3 2 35 35 H 1.08989 * 109.47082 * 304.99841 * 6 3 2 36 36 H 0.97000 * 119.99514 * 354.55960 * 10 8 7 37 37 H 1.07993 * 119.76510 * 359.97438 * 12 11 10 38 38 H 1.08005 * 119.85279 * 179.97438 * 13 12 11 39 39 H 0.96999 * 119.99811 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.14500 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5649 1.4443 0.1258 7 8 4.0391 2.8116 0.2447 8 6 5.3683 2.9893 0.3652 9 8 6.1117 2.0281 0.3703 10 7 5.8738 4.2329 0.4852 11 6 7.2417 4.4126 0.7246 12 6 7.9019 5.5167 0.1886 13 6 9.2532 5.7059 0.4183 14 6 9.9628 4.8012 1.1816 15 9 11.2822 4.9895 1.4029 16 6 9.3069 3.6799 1.7297 17 6 10.0246 2.7484 2.5130 18 1 11.0802 2.5980 2.3409 19 6 9.3679 2.0209 3.5117 20 7 8.1526 2.3493 3.8683 21 14 10.2262 0.5808 4.3356 22 1 10.8722 1.0418 5.5907 23 1 9.2303 -0.4749 4.6502 24 1 11.2585 0.0306 3.4208 25 6 7.9319 3.4981 1.4962 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 0.5490 2.1252 -1.3970 32 1 1.9990 3.1541 -1.3076 33 1 2.0699 1.5875 -2.1492 34 1 4.0030 0.9837 -0.7596 35 1 3.8570 0.8801 1.0113 36 1 5.2900 5.0035 0.4057 37 1 7.3550 6.2297 -0.4103 38 1 9.7550 6.5648 -0.0023 39 1 7.6975 1.8452 4.5609 40 1 7.4187 2.6452 1.9154 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194811276.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:03 Heat of formation + Delta-G solvation = -144.841813 kcal Electronic energy + Delta-G solvation = -23434.282695 eV Core-core repulsion = 19740.929566 eV Total energy + Delta-G solvation = -3693.353130 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.18185 -41.80346 -39.66896 -38.17794 -36.65473 -36.20962 -35.09789 -31.72756 -31.15022 -29.82782 -27.90009 -27.35717 -24.81696 -23.69311 -23.04933 -21.78301 -21.04447 -20.12723 -19.24301 -18.07556 -17.97673 -17.73436 -17.03235 -16.82794 -16.19084 -16.03134 -15.94120 -15.60338 -14.86787 -14.78539 -14.57840 -14.35827 -13.86092 -13.73335 -13.66146 -13.49703 -13.07152 -12.92483 -12.89339 -12.81761 -12.54480 -12.36193 -12.21231 -11.89170 -11.75612 -11.67820 -11.58940 -11.50561 -11.41022 -11.26311 -10.80253 -9.49392 -8.82388 -8.64331 -6.47964 0.57742 0.87829 1.10340 1.32588 1.41774 1.48296 1.78271 2.16375 2.64561 3.14567 3.48475 3.76226 3.80366 4.01630 4.03173 4.28897 4.30363 4.31789 4.51131 4.61604 4.63968 4.70501 4.80395 4.85942 4.96373 4.99795 5.05456 5.11813 5.16100 5.18646 5.20366 5.33181 5.45030 5.51150 5.57867 5.68291 5.73568 6.04038 6.14228 6.44494 6.50885 6.76871 6.83137 7.32584 8.25512 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.015525 B = 0.004144 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.122091 B = 6755.528805 C = 8330.412843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.083 4.083 4 H 0.084 0.916 5 C -0.146 4.146 6 C 0.084 3.916 7 O -0.359 6.359 8 C 0.641 3.359 9 O -0.588 6.588 10 N -0.630 5.630 11 C 0.148 3.852 12 C -0.213 4.213 13 C -0.102 4.102 14 C -0.064 4.064 15 F -0.168 7.168 16 C 0.062 3.938 17 C -0.492 4.492 18 H 0.073 0.927 19 C 0.033 3.967 20 N -0.821 5.821 21 Si 0.985 3.015 22 H -0.256 1.256 23 H -0.264 1.264 24 H -0.260 1.260 25 C -0.160 4.160 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.427 0.573 37 H 0.152 0.848 38 H 0.145 0.855 39 H 0.288 0.712 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.585 -0.949 -6.334 16.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.102 4.102 4 H 0.102 0.898 5 C -0.203 4.203 6 C 0.009 3.991 7 O -0.273 6.273 8 C 0.395 3.605 9 O -0.478 6.478 10 N -0.283 5.283 11 C 0.056 3.944 12 C -0.234 4.234 13 C -0.121 4.121 14 C -0.084 4.084 15 F -0.147 7.147 16 C 0.058 3.942 17 C -0.521 4.521 18 H 0.091 0.909 19 C -0.182 4.182 20 N -0.447 5.447 21 Si 0.805 3.195 22 H -0.181 1.181 23 H -0.189 1.189 24 H -0.184 1.184 25 C -0.181 4.181 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.266 0.734 37 H 0.170 0.830 38 H 0.163 0.837 39 H 0.098 0.902 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.506 -1.539 -6.164 16.757 hybrid contribution 0.681 -0.387 0.610 0.992 sum -14.826 -1.926 -5.554 15.948 Atomic orbital electron populations 1.21777 0.93775 1.02446 1.02546 1.21514 0.97499 0.93851 1.02668 1.21250 0.89725 0.98528 1.00675 0.89801 1.21862 1.02453 1.00379 0.95586 1.23339 0.96026 0.77795 1.01916 1.86196 1.20608 1.34423 1.86082 1.18263 0.81646 0.84345 0.76239 1.91042 1.60059 1.41021 1.55661 1.41742 1.07648 1.05899 1.73004 1.17532 0.81498 0.97656 0.97737 1.20322 0.93652 1.00936 1.08478 1.20671 0.94322 0.98578 0.98544 1.18262 0.78455 0.99783 1.11922 1.91240 1.33573 1.95367 1.94542 1.17842 0.92968 0.91266 0.92113 1.19686 0.97031 1.19860 1.15507 0.90858 1.26751 0.95335 0.99706 0.96362 1.69826 1.13126 1.36865 1.24855 0.85147 0.78847 0.76791 0.78720 1.18056 1.18865 1.18370 1.21210 0.94620 1.01562 1.00746 0.91555 0.91792 0.92462 0.91194 0.91931 0.90312 0.92857 0.92577 0.91524 0.92441 0.73440 0.83010 0.83703 0.90155 0.85794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.67 71.98 0.70 -1.08 16 2 C -0.12 -1.84 5.40 30.60 0.17 -1.67 16 3 C -0.08 -1.58 2.63 -10.79 -0.03 -1.61 16 4 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 5 C -0.15 -2.41 8.85 71.98 0.64 -1.78 16 6 C 0.08 2.28 4.85 71.98 0.35 2.63 16 7 O -0.36 -11.47 9.81 -55.53 -0.54 -12.01 16 8 C 0.64 25.79 8.48 129.79 1.10 26.89 16 9 O -0.59 -29.06 13.85 19.78 0.27 -28.79 16 10 N -0.63 -23.48 5.35 -429.56 -2.30 -25.77 16 11 C 0.15 6.70 6.27 38.08 0.24 6.94 16 12 C -0.21 -8.36 9.96 22.57 0.22 -8.14 16 13 C -0.10 -4.33 10.00 22.25 0.22 -4.11 16 14 C -0.06 -3.31 7.31 22.89 0.17 -3.14 16 15 F -0.17 -8.70 16.75 44.97 0.75 -7.94 16 16 C 0.06 3.54 5.56 -21.26 -0.12 3.42 16 17 C -0.49 -28.57 8.76 23.43 0.21 -28.37 16 18 H 0.07 4.21 7.76 -2.91 -0.02 4.19 16 19 C 0.03 1.79 5.25 85.25 0.45 2.23 16 20 N -0.82 -45.22 10.82 21.82 0.24 -44.98 16 21 Si 0.98 41.00 29.57 68.60 2.03 43.03 16 22 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 25 C -0.16 -8.76 7.25 22.83 0.17 -8.59 16 26 H 0.07 0.70 6.56 -2.39 -0.02 0.68 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 0.99 6.56 -2.39 -0.02 0.98 16 32 H 0.05 0.99 7.82 -2.38 -0.02 0.97 16 33 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.43 11.91 8.93 -92.71 -0.83 11.08 16 37 H 0.15 4.49 8.06 -2.91 -0.02 4.47 16 38 H 0.15 5.02 8.06 -2.91 -0.02 4.99 16 39 H 0.29 14.38 8.30 -92.71 -0.77 13.61 16 40 H 0.12 7.42 4.56 -2.91 -0.01 7.41 16 Total: -1.00 -69.35 339.44 5.16 -64.19 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: 0.24 Total: 28.65 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: 4.47 Total: -16.37 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -2.06 Total: -70.76 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -0.27 Total: -40.80 kcal Atomic # 9 Polarization: -8.70 SS G_CDS: 0.75 Total: -7.94 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -69.35 5.16 -64.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194811276.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.655 kcal (2) G-P(sol) polarization free energy of solvation -69.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds