Wall clock time and date at job start Tue Mar 31 2020 07:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47270 * 2 1 4 4 C 1.52999 * 109.47270 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47003 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99853 * 269.99522 * 5 4 3 7 7 C 1.50695 * 109.47166 * 269.99726 * 6 5 4 8 8 H 1.08003 * 120.00253 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00168 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99781 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00385 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46760 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47602 * 119.99700 * 11 9 7 14 14 H 1.48506 * 109.46842 * 240.00191 * 11 9 7 15 15 C 1.34786 * 120.00018 * 89.99865 * 5 4 3 16 16 O 1.21515 * 119.99532 * 359.97438 * 15 5 4 17 17 O 1.34667 * 119.99760 * 179.97438 * 15 5 4 18 18 C 1.35971 * 116.99481 * 175.09246 * 17 15 5 19 19 C 1.38714 * 120.02989 * 256.79251 * 18 17 15 20 20 C 1.38135 * 119.96866 * 179.81540 * 19 18 17 21 21 C 1.38464 * 120.03539 * 0.44492 * 20 19 18 22 22 F 1.35092 * 119.97161 * 179.76722 * 21 20 19 23 23 C 1.38459 * 120.05398 * 359.78869 * 21 20 19 24 24 C 1.38151 * 120.03063 * 359.97438 * 23 21 20 25 25 H 1.09004 * 109.46561 * 60.00691 * 1 2 3 26 26 H 1.09002 * 109.46783 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47086 * 300.00491 * 1 2 3 28 28 H 1.09000 * 109.47542 * 239.99339 * 2 1 3 29 29 H 1.09002 * 109.47183 * 119.99716 * 2 1 3 30 30 H 1.09000 * 109.47378 * 59.99239 * 3 2 1 31 31 H 1.08997 * 109.46898 * 299.99501 * 3 2 1 32 32 H 1.08996 * 109.47780 * 59.99793 * 4 3 2 33 33 H 1.09004 * 109.46561 * 299.99309 * 4 3 2 34 34 H 1.08991 * 109.47017 * 30.00399 * 6 5 4 35 35 H 1.09005 * 109.46915 * 150.00127 * 6 5 4 36 36 H 0.97007 * 120.00183 * 180.02562 * 10 9 7 37 37 H 1.07995 * 120.00877 * 0.02586 * 19 18 17 38 38 H 1.08007 * 119.98248 * 180.20959 * 20 19 18 39 39 H 1.07995 * 119.98642 * 179.97438 * 23 21 20 40 40 H 1.07995 * 120.01407 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3031 3.5135 -1.2690 7 6 5.7266 3.2765 -1.7032 8 1 6.3832 2.6721 -1.0949 9 6 6.1908 3.8312 -2.8769 10 7 5.3914 4.5676 -3.6174 11 14 7.9551 3.5369 -3.4155 12 1 8.6419 2.6816 -2.4146 13 1 7.9629 2.8579 -4.7362 14 1 8.6631 4.8378 -3.5235 15 6 4.2824 3.4598 1.1670 16 8 4.0790 2.8877 2.2196 17 8 4.7318 4.7293 1.1664 18 6 4.8393 5.3466 2.3731 19 6 3.8878 6.2772 2.7640 20 6 3.9961 6.9007 3.9919 21 6 5.0588 6.6040 4.8285 22 9 5.1660 7.2181 6.0270 23 6 6.0118 5.6789 4.4375 24 6 5.9033 5.0502 3.2121 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6768 1.9562 -0.8900 32 1 3.9338 0.9285 -0.8890 33 1 3.9329 0.9288 0.8910 34 1 3.6227 3.1289 -2.0287 35 1 4.1360 4.5828 -1.1394 36 1 5.7178 4.9576 -4.4435 37 1 3.0609 6.5115 2.1101 38 1 3.2535 7.6228 4.2979 39 1 6.8405 5.4487 5.0907 40 1 6.6470 4.3290 2.9072 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195022055.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:44 Heat of formation + Delta-G solvation = -104.479868 kcal Electronic energy + Delta-G solvation = -23538.952725 eV Core-core repulsion = 19847.349821 eV Total energy + Delta-G solvation = -3691.602904 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.90998 -40.75676 -38.58871 -36.81570 -35.44665 -34.29456 -32.51522 -31.20671 -29.75184 -28.87091 -27.01435 -24.16389 -23.21966 -23.12829 -22.26271 -20.97554 -20.00081 -17.82323 -17.43796 -17.11196 -16.89225 -16.36549 -15.59320 -15.18105 -15.13421 -14.97243 -14.57763 -14.23580 -13.83466 -13.59929 -13.45587 -13.23511 -12.88221 -12.56870 -12.41900 -12.29374 -11.91712 -11.61736 -11.48457 -11.20434 -11.05124 -10.95724 -10.86555 -10.77067 -10.44559 -10.30688 -10.15397 -9.94758 -9.75571 -9.14627 -8.56902 -8.46095 -7.92312 -6.17534 -4.23757 0.98500 1.20795 2.78950 3.22606 3.30426 3.33228 3.37718 3.67125 4.22805 4.32031 4.56152 4.73910 4.82435 5.13418 5.14070 5.17289 5.21890 5.28947 5.34695 5.51522 5.71439 5.85257 5.86640 5.90023 5.96338 6.03974 6.06434 6.12068 6.14600 6.28939 6.39755 6.46218 6.55201 6.64393 6.67162 7.15238 7.20664 7.43569 7.75940 8.04838 8.12855 8.76876 8.99838 9.43070 10.90199 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.009407 B = 0.005319 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2975.656177 B = 5262.552585 C = 7596.705051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.136 4.136 4 C 0.135 3.865 5 N -0.572 5.572 6 C 0.239 3.761 7 C -0.535 4.535 8 H 0.060 0.940 9 C 0.065 3.935 10 N -0.892 5.892 11 Si 0.897 3.103 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.647 3.353 16 O -0.588 6.588 17 O -0.287 6.287 18 C 0.111 3.889 19 C -0.094 4.094 20 C -0.141 4.141 21 C 0.089 3.911 22 F -0.142 7.142 23 C -0.140 4.140 24 C -0.088 4.088 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.040 0.960 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.968 -0.743 10.422 11.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.175 4.175 4 C 0.013 3.987 5 N -0.308 5.308 6 C 0.120 3.880 7 C -0.574 4.574 8 H 0.079 0.921 9 C -0.138 4.138 10 N -0.530 5.530 11 Si 0.725 3.275 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.208 1.208 15 C 0.402 3.598 16 O -0.479 6.479 17 O -0.199 6.199 18 C 0.068 3.932 19 C -0.112 4.112 20 C -0.160 4.160 21 C 0.070 3.930 22 F -0.120 7.120 23 C -0.159 4.159 24 C -0.107 4.107 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.005 -0.765 10.598 11.745 hybrid contribution 1.081 0.085 -0.304 1.126 sum -3.925 -0.679 10.294 11.038 Atomic orbital electron populations 1.21753 0.96068 1.01155 1.01769 1.21431 0.95669 0.96710 1.02023 1.22010 0.96118 0.96831 1.02511 1.21393 0.93042 0.81086 1.03156 1.47201 1.64681 1.13634 1.05305 1.19502 0.96996 0.93074 0.78399 1.21478 0.96653 1.32448 1.06788 0.92140 1.24914 0.97962 0.94699 0.96181 1.69931 1.35667 1.33122 1.14281 0.86449 0.84410 0.78144 0.78511 1.19711 1.20835 1.20793 1.18261 0.76987 0.79637 0.84886 1.90928 1.59195 1.66733 1.31038 1.84485 1.78865 1.27423 1.29108 1.18403 0.94762 0.94793 0.85267 1.21076 0.98020 0.96708 0.95434 1.20919 0.98521 1.02504 0.94038 1.17679 0.97241 0.95925 0.82188 1.91480 1.96036 1.81437 1.43077 1.20954 0.99825 0.97622 0.97477 1.21264 0.97924 0.98917 0.92566 0.92742 0.93045 0.92939 0.91797 0.92032 0.91953 0.91513 0.89556 0.90693 0.94206 0.93833 0.92587 0.84116 0.84172 0.84278 0.84296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 37.16 0.37 -1.26 16 2 C -0.12 -1.47 5.93 -26.73 -0.16 -1.63 16 3 C -0.14 -2.06 5.54 -26.73 -0.15 -2.21 16 4 C 0.14 2.39 5.41 -4.04 -0.02 2.37 16 5 N -0.57 -12.11 2.46 -180.85 -0.44 -12.56 16 6 C 0.24 5.77 5.17 -5.20 -0.03 5.74 16 7 C -0.53 -14.14 9.39 -34.44 -0.32 -14.47 16 8 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 9 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -24.83 13.29 55.43 0.74 -24.10 16 11 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 C 0.65 13.97 8.27 54.06 0.45 14.42 16 16 O -0.59 -13.05 15.46 -19.28 -0.30 -13.35 16 17 O -0.29 -6.05 8.85 -24.81 -0.22 -6.26 16 18 C 0.11 1.97 5.14 -39.23 -0.20 1.77 16 19 C -0.09 -1.39 9.98 -39.44 -0.39 -1.79 16 20 C -0.14 -1.81 10.02 -39.54 -0.40 -2.20 16 21 C 0.09 1.19 7.30 -39.42 -0.29 0.90 16 22 F -0.14 -1.84 17.27 2.25 0.04 -1.81 16 23 C -0.14 -1.88 10.02 -39.53 -0.40 -2.28 16 24 C -0.09 -1.40 9.57 -39.44 -0.38 -1.78 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.49 8.07 -51.93 -0.42 1.07 16 33 H 0.07 1.32 7.42 -51.93 -0.39 0.93 16 34 H 0.04 0.98 8.07 -51.93 -0.42 0.56 16 35 H 0.04 1.13 7.38 -51.93 -0.38 0.74 16 36 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 37 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 39 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 LS Contribution 351.57 15.07 5.30 5.30 Total: -1.00 -29.50 351.57 -7.73 -37.22 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -5.80 Total: 0.58 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -2.01 Total: -0.75 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.29 Total: -36.65 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.52 Total: -19.61 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.50 -7.73 -37.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195022055.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.258 kcal (2) G-P(sol) polarization free energy of solvation -29.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds