Wall clock time and date at job start Tue Mar 31 2020 07:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47270 * 2 1 4 4 C 1.52999 * 109.47270 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.47003 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99853 * 269.99522 * 5 4 3 7 7 C 1.50695 * 109.47166 * 269.99726 * 6 5 4 8 8 H 1.08003 * 120.00253 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00168 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99781 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00385 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46760 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47602 * 119.99700 * 11 9 7 14 14 H 1.48506 * 109.46842 * 240.00191 * 11 9 7 15 15 C 1.34786 * 120.00018 * 89.99865 * 5 4 3 16 16 O 1.21515 * 119.99532 * 359.97438 * 15 5 4 17 17 O 1.34667 * 119.99760 * 179.97438 * 15 5 4 18 18 C 1.35971 * 116.99481 * 175.09246 * 17 15 5 19 19 C 1.38714 * 120.02989 * 256.79251 * 18 17 15 20 20 C 1.38135 * 119.96866 * 179.81540 * 19 18 17 21 21 C 1.38464 * 120.03539 * 0.44492 * 20 19 18 22 22 F 1.35092 * 119.97161 * 179.76722 * 21 20 19 23 23 C 1.38459 * 120.05398 * 359.78869 * 21 20 19 24 24 C 1.38151 * 120.03063 * 359.97438 * 23 21 20 25 25 H 1.09004 * 109.46561 * 60.00691 * 1 2 3 26 26 H 1.09002 * 109.46783 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47086 * 300.00491 * 1 2 3 28 28 H 1.09000 * 109.47542 * 239.99339 * 2 1 3 29 29 H 1.09002 * 109.47183 * 119.99716 * 2 1 3 30 30 H 1.09000 * 109.47378 * 59.99239 * 3 2 1 31 31 H 1.08997 * 109.46898 * 299.99501 * 3 2 1 32 32 H 1.08996 * 109.47780 * 59.99793 * 4 3 2 33 33 H 1.09004 * 109.46561 * 299.99309 * 4 3 2 34 34 H 1.08991 * 109.47017 * 30.00399 * 6 5 4 35 35 H 1.09005 * 109.46915 * 150.00127 * 6 5 4 36 36 H 0.97007 * 120.00183 * 180.02562 * 10 9 7 37 37 H 1.07995 * 120.00877 * 0.02586 * 19 18 17 38 38 H 1.08007 * 119.98248 * 180.20959 * 20 19 18 39 39 H 1.07995 * 119.98642 * 179.97438 * 23 21 20 40 40 H 1.07995 * 120.01407 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.3031 3.5135 -1.2690 7 6 5.7266 3.2765 -1.7032 8 1 6.3832 2.6721 -1.0949 9 6 6.1908 3.8312 -2.8769 10 7 5.3914 4.5676 -3.6174 11 14 7.9551 3.5369 -3.4155 12 1 8.6419 2.6816 -2.4146 13 1 7.9629 2.8579 -4.7362 14 1 8.6631 4.8378 -3.5235 15 6 4.2824 3.4598 1.1670 16 8 4.0790 2.8877 2.2196 17 8 4.7318 4.7293 1.1664 18 6 4.8393 5.3466 2.3731 19 6 3.8878 6.2772 2.7640 20 6 3.9961 6.9007 3.9919 21 6 5.0588 6.6040 4.8285 22 9 5.1660 7.2181 6.0270 23 6 6.0118 5.6789 4.4375 24 6 5.9033 5.0502 3.2121 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6768 1.9562 -0.8900 32 1 3.9338 0.9285 -0.8890 33 1 3.9329 0.9288 0.8910 34 1 3.6227 3.1289 -2.0287 35 1 4.1360 4.5828 -1.1394 36 1 5.7178 4.9576 -4.4435 37 1 3.0609 6.5115 2.1101 38 1 3.2535 7.6228 4.2979 39 1 6.8405 5.4487 5.0907 40 1 6.6470 4.3290 2.9072 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195022055.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:43 Heat of formation + Delta-G solvation = -118.286149 kcal Electronic energy + Delta-G solvation = -23539.551410 eV Core-core repulsion = 19847.349821 eV Total energy + Delta-G solvation = -3692.201590 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.97684 -42.27129 -39.95386 -38.21621 -37.04649 -35.71567 -34.41659 -32.33008 -30.97753 -30.28674 -28.79997 -25.48810 -25.07626 -24.30172 -23.53380 -22.09880 -21.46110 -19.27947 -18.89174 -18.61343 -18.51612 -17.97858 -16.73461 -16.66904 -16.52487 -16.29063 -16.22799 -15.49174 -15.03287 -14.94153 -14.68248 -14.41523 -14.30358 -14.05807 -13.80860 -13.52770 -13.48539 -13.17960 -12.85905 -12.77660 -12.67582 -12.40546 -12.26161 -12.05482 -11.89058 -11.77486 -11.69488 -11.61867 -11.43067 -10.62662 -10.25999 -9.71309 -9.62397 -8.22707 -6.36673 -0.23072 0.09295 1.34301 1.39728 1.42265 1.53277 1.69168 2.37275 2.45703 3.05964 3.09456 3.12500 3.64561 3.75655 3.96221 3.99749 4.08613 4.22139 4.23029 4.32485 4.50752 4.62442 4.73999 4.78510 4.78974 4.89336 4.95089 4.96604 4.98437 5.09404 5.16122 5.22252 5.27359 5.35162 5.39975 5.47125 5.59716 5.70843 5.85677 6.01915 6.36929 6.72405 7.27836 7.39032 8.84473 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.009407 B = 0.005319 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2975.656177 B = 5262.552585 C = 7596.705051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.125 4.125 4 C 0.131 3.869 5 N -0.576 5.576 6 C 0.258 3.742 7 C -0.547 4.547 8 H 0.052 0.948 9 C 0.020 3.980 10 N -0.921 5.921 11 Si 0.960 3.040 12 H -0.271 1.271 13 H -0.273 1.273 14 H -0.279 1.279 15 C 0.644 3.356 16 O -0.598 6.598 17 O -0.305 6.305 18 C 0.067 3.933 19 C -0.098 4.098 20 C -0.129 4.129 21 C 0.092 3.908 22 F -0.135 7.135 23 C -0.133 4.133 24 C -0.102 4.102 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.020 0.980 36 H 0.268 0.732 37 H 0.151 0.849 38 H 0.175 0.825 39 H 0.167 0.833 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.882 -0.834 11.391 12.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.164 4.164 4 C 0.010 3.990 5 N -0.312 5.312 6 C 0.137 3.863 7 C -0.586 4.586 8 H 0.070 0.930 9 C -0.180 4.180 10 N -0.560 5.560 11 Si 0.785 3.215 12 H -0.195 1.195 13 H -0.198 1.198 14 H -0.205 1.205 15 C 0.399 3.601 16 O -0.490 6.490 17 O -0.217 6.217 18 C 0.025 3.975 19 C -0.116 4.116 20 C -0.147 4.147 21 C 0.073 3.927 22 F -0.114 7.114 23 C -0.151 4.151 24 C -0.120 4.120 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.051 0.949 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.168 0.832 38 H 0.192 0.808 39 H 0.184 0.816 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.928 -0.863 11.583 12.617 hybrid contribution 1.043 0.179 -0.492 1.168 sum -3.885 -0.683 11.090 11.771 Atomic orbital electron populations 1.21738 0.94736 1.02358 1.01710 1.21421 0.96785 0.94446 1.02737 1.21912 0.94099 0.98873 1.01518 1.21619 0.94753 0.79380 1.03260 1.47241 1.64935 1.14698 1.04359 1.19069 0.95896 0.91961 0.79361 1.21673 0.97547 1.32421 1.06953 0.93012 1.25671 1.01794 0.94343 0.96176 1.70020 1.37432 1.33807 1.14727 0.85475 0.79643 0.78059 0.78302 1.19517 1.19803 1.20488 1.18392 0.76845 0.80090 0.84738 1.90890 1.59774 1.67194 1.31180 1.84488 1.78751 1.27073 1.31364 1.18905 0.96914 0.96400 0.85279 1.21239 0.97770 0.96181 0.96429 1.21230 0.98770 1.02039 0.92673 1.17781 0.97123 0.95478 0.82296 1.91505 1.95978 1.81212 1.42668 1.21178 1.00545 0.96800 0.96612 1.21298 0.97633 0.99631 0.93475 0.92785 0.91204 0.93076 0.90954 0.91453 0.93156 0.92203 0.89277 0.90600 0.94890 0.96169 0.92248 0.83157 0.80798 0.81569 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.91 71.98 0.71 -2.26 16 2 C -0.12 -2.70 5.93 30.59 0.18 -2.52 16 3 C -0.13 -3.81 5.54 30.59 0.17 -3.64 16 4 C 0.13 4.69 5.41 86.38 0.47 5.15 16 5 N -0.58 -25.15 2.46 -956.48 -2.35 -27.50 16 6 C 0.26 12.85 5.17 85.63 0.44 13.29 16 7 C -0.55 -29.51 9.39 25.60 0.24 -29.27 16 8 H 0.05 2.83 7.81 -2.91 -0.02 2.80 16 9 C 0.02 1.10 5.46 84.65 0.46 1.56 16 10 N -0.92 -51.80 13.29 21.45 0.28 -51.51 16 11 Si 0.96 42.55 29.54 68.60 2.03 44.57 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 13 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 14 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 15 C 0.64 28.69 8.27 129.79 1.07 29.77 16 16 O -0.60 -27.11 15.46 19.79 0.31 -26.80 16 17 O -0.30 -13.35 8.85 -0.01 0.00 -13.35 16 18 C 0.07 2.44 5.14 22.49 0.12 2.55 16 19 C -0.10 -2.85 9.98 22.36 0.22 -2.63 16 20 C -0.13 -3.01 10.02 22.30 0.22 -2.79 16 21 C 0.09 2.26 7.30 22.38 0.16 2.42 16 22 F -0.14 -3.12 17.27 44.97 0.78 -2.34 16 23 C -0.13 -3.37 10.02 22.30 0.22 -3.15 16 24 C -0.10 -3.25 9.57 22.36 0.21 -3.04 16 25 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.09 3.10 8.07 -2.39 -0.02 3.08 16 33 H 0.08 2.69 7.42 -2.38 -0.02 2.67 16 34 H 0.03 1.67 8.07 -2.39 -0.02 1.66 16 35 H 0.02 1.10 7.38 -2.38 -0.02 1.08 16 36 H 0.27 14.19 8.31 -92.70 -0.77 13.42 16 37 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 38 H 0.17 2.85 8.06 -2.91 -0.02 2.82 16 39 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 40 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -63.30 351.57 6.98 -56.32 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 1.02 Total: 15.16 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 4.91 Total: 5.46 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -2.06 Total: -79.01 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: 0.31 Total: -40.16 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.78 Total: -2.34 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -63.30 6.98 -56.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195022055.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.971 kcal (2) G-P(sol) polarization free energy of solvation -63.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds