Wall clock time and date at job start Tue Mar 31 2020 08:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47146 * 2 1 4 4 H 1.08990 * 109.47548 * 305.00277 * 3 2 1 5 5 C 1.50700 * 109.47275 * 184.99777 * 3 2 1 6 6 H 1.07997 * 120.00203 * 240.00132 * 5 3 2 7 7 C 1.37884 * 119.99711 * 60.00411 * 5 3 2 8 8 N 1.31510 * 119.99748 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00028 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47339 * 59.99627 * 9 7 5 11 11 H 1.48494 * 109.47384 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47294 * 300.00044 * 9 7 5 13 13 N 1.46506 * 109.46874 * 65.00438 * 3 2 1 14 14 C 1.34780 * 119.99630 * 274.99821 * 13 3 2 15 15 O 1.21605 * 119.99880 * 0.02562 * 14 13 3 16 16 C 1.47388 * 120.00007 * 180.02562 * 14 13 3 17 17 C 1.39962 * 120.20890 * 269.99971 * 16 14 13 18 18 F 1.35104 * 120.08499 * 0.02562 * 17 16 14 19 19 C 1.38135 * 119.83677 * 180.27207 * 17 16 14 20 20 C 1.38416 * 120.26691 * 359.47423 * 19 17 16 21 21 C 1.38138 * 120.43473 * 0.54918 * 20 19 17 22 22 C 1.50702 * 119.92272 * 179.72333 * 21 20 19 23 23 C 1.38629 * 120.15521 * 359.70527 * 21 20 19 24 24 O 1.35655 * 120.13811 * 180.02562 * 23 21 20 25 25 C 1.42907 * 116.99984 * 269.98104 * 24 23 21 26 26 H 1.09003 * 109.47053 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47156 * 299.99302 * 1 2 3 28 28 H 1.09003 * 109.47107 * 60.00028 * 1 2 3 29 29 H 1.09005 * 109.47440 * 240.00039 * 2 1 3 30 30 H 1.08997 * 109.47455 * 120.00212 * 2 1 3 31 31 H 0.97002 * 119.99835 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00107 * 95.00196 * 13 3 2 33 33 H 1.08002 * 119.86942 * 179.72669 * 19 17 16 34 34 H 1.08003 * 119.78763 * 180.30029 * 20 19 17 35 35 H 1.09002 * 109.47380 * 269.98262 * 22 21 20 36 36 H 1.08997 * 109.47048 * 29.98205 * 22 21 20 37 37 H 1.09000 * 109.46822 * 149.98286 * 22 21 20 38 38 H 1.08998 * 109.47052 * 180.02562 * 25 24 23 39 39 H 1.09006 * 109.46735 * 299.99876 * 25 24 23 40 40 H 1.08998 * 109.47000 * 59.99348 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1728 9 14 6.0049 0.8813 -1.3819 10 1 6.5976 0.1474 -0.2350 11 1 6.3978 0.2168 -2.6504 12 1 6.4995 2.2816 -1.3821 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6643 1.3671 15 8 -0.3417 2.6318 0.4320 16 6 0.0454 3.3237 2.6263 17 6 -0.5894 2.5926 3.6370 18 9 -0.8470 1.2779 3.4620 19 6 -0.9563 3.2196 4.8119 20 6 -0.6891 4.5649 4.9976 21 6 -0.0636 5.2973 4.0074 22 6 0.2162 6.7629 4.2194 23 6 0.3077 4.6872 2.8192 24 8 0.9224 5.4067 1.8472 25 6 0.0829 6.0397 0.8794 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8292 -0.0617 -2.9495 32 1 2.2720 2.1231 1.9978 33 1 -1.4501 2.6569 5.5903 34 1 -0.9751 5.0462 5.9212 35 1 -0.6313 7.3496 3.8648 36 1 0.3709 6.9533 5.2814 37 1 1.1112 7.0457 3.6653 38 1 0.6997 6.5800 0.1613 39 1 -0.5039 5.2837 0.3575 40 1 -0.5875 6.7376 1.3809 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198274033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:41 Heat of formation + Delta-G solvation = -101.678223 kcal Electronic energy + Delta-G solvation = -24653.043009 eV Core-core repulsion = 20961.561593 eV Total energy + Delta-G solvation = -3691.481416 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.85351 -40.35360 -38.53116 -37.18454 -35.02045 -32.73367 -32.22752 -31.15989 -30.28214 -27.52913 -26.89622 -26.23762 -23.98664 -22.75765 -21.90639 -20.29827 -19.32781 -18.26532 -17.43584 -17.26217 -16.09347 -15.81263 -15.70270 -15.24281 -15.19317 -14.74047 -14.52646 -14.25710 -14.02767 -13.58387 -13.35487 -13.20140 -12.66014 -12.38666 -12.17073 -12.07165 -11.92730 -11.63588 -11.45947 -11.27643 -11.21259 -10.96794 -10.78988 -10.31088 -10.16495 -10.06240 -9.59874 -9.19784 -9.05041 -8.86194 -8.56796 -8.46822 -7.82246 -6.09166 -4.18201 0.85440 0.93663 3.09966 3.23808 3.28521 3.33185 3.35112 3.69350 4.00993 4.27157 4.39190 4.59834 4.82232 4.96323 5.05721 5.22128 5.27490 5.35413 5.43984 5.48367 5.49086 5.67077 5.78632 5.92049 5.97645 6.02221 6.24219 6.44118 6.51508 6.54246 6.70837 7.10115 7.22210 7.38548 7.41299 7.45255 7.64662 7.75190 7.92452 8.20159 8.64850 8.78282 9.08183 9.48269 10.96222 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.017625 B = 0.005058 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.230461 B = 5534.314229 C = 6249.121006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.690 5.690 14 C 0.557 3.443 15 O -0.539 6.539 16 C -0.167 4.167 17 C 0.137 3.863 18 F -0.126 7.126 19 C -0.160 4.160 20 C -0.072 4.072 21 C -0.120 4.120 22 C -0.109 4.109 23 C 0.156 3.844 24 O -0.326 6.326 25 C 0.036 3.964 26 H 0.023 0.977 27 H 0.039 0.961 28 H 0.048 0.952 29 H 0.100 0.900 30 H 0.032 0.968 31 H 0.265 0.735 32 H 0.390 0.610 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.507 10.324 13.777 18.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.336 5.336 14 C 0.340 3.660 15 O -0.418 6.418 16 C -0.172 4.172 17 C 0.117 3.883 18 F -0.104 7.104 19 C -0.179 4.179 20 C -0.091 4.091 21 C -0.121 4.121 22 C -0.166 4.166 23 C 0.111 3.889 24 O -0.243 6.243 25 C -0.057 4.057 26 H 0.042 0.958 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.118 0.882 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.222 0.778 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.078 0.922 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.828 10.156 12.825 18.135 hybrid contribution 1.002 -0.386 0.222 1.096 sum -6.826 9.770 13.047 17.671 Atomic orbital electron populations 1.21853 0.98332 0.98163 1.01249 1.21939 0.92650 0.99678 1.02362 1.18844 0.94346 0.89179 0.80648 0.93219 1.21184 0.90572 1.39010 1.06330 0.92084 1.24870 0.98590 0.94784 0.95341 1.69886 1.35196 1.37589 1.09364 0.86509 0.84873 0.78316 0.77411 1.20168 1.21143 1.20169 1.46482 1.13856 1.54567 1.18653 1.17611 0.83352 0.79066 0.86006 1.90778 1.51602 1.60117 1.39313 1.20734 1.04144 0.95378 0.96949 1.17478 0.98620 0.78355 0.93893 1.91563 1.91613 1.31636 1.95575 1.21060 1.04147 0.95909 0.96777 1.20814 0.96897 0.92743 0.98615 1.20175 1.00195 0.97560 0.94159 1.20690 1.02698 0.90589 1.02606 1.18207 0.93628 0.87968 0.89122 1.85938 1.33088 1.66240 1.39019 1.23090 0.95304 0.96890 0.90448 0.95770 0.94148 0.93239 0.88160 0.94961 0.92531 0.77782 0.84079 0.84387 0.91241 0.91187 0.90511 0.88422 0.92162 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.51 37.16 0.32 -2.95 16 2 C -0.13 -3.22 5.45 -26.73 -0.15 -3.37 16 3 C 0.27 7.05 2.24 -69.08 -0.15 6.90 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 5 C -0.53 -14.39 8.73 -34.44 -0.30 -14.69 16 6 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -24.98 11.29 55.43 0.63 -24.36 16 9 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.69 -15.48 5.02 -56.02 -0.28 -15.76 16 14 C 0.56 12.03 5.00 -12.53 -0.06 11.97 16 15 O -0.54 -13.22 13.98 5.27 0.07 -13.14 16 16 C -0.17 -2.95 5.64 -104.80 -0.59 -3.54 16 17 C 0.14 2.14 7.29 -38.97 -0.28 1.86 16 18 F -0.13 -2.18 16.83 2.25 0.04 -2.14 16 19 C -0.16 -1.84 10.01 -39.55 -0.40 -2.24 16 20 C -0.07 -0.72 9.67 -39.55 -0.38 -1.11 16 21 C -0.12 -1.41 5.89 -104.51 -0.62 -2.02 16 22 C -0.11 -0.96 9.79 36.01 0.35 -0.60 16 23 C 0.16 2.40 5.70 -38.71 -0.22 2.18 16 24 O -0.33 -5.24 8.91 -18.66 -0.17 -5.41 16 25 C 0.04 0.49 11.13 101.05 1.12 1.62 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.95 5.64 -51.93 -0.29 0.65 16 28 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 29 H 0.10 2.76 5.95 -51.93 -0.31 2.45 16 30 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.39 7.99 8.52 -40.82 -0.35 7.64 16 33 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 37 H 0.08 0.74 7.53 -51.93 -0.39 0.35 16 38 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 39 H 0.06 0.95 7.88 -51.93 -0.41 0.54 16 40 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 339.12 15.07 5.11 5.11 Total: -1.00 -31.43 339.12 -6.55 -37.98 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.47 Total: 6.10 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -1.45 Total: -4.28 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.34 Total: -40.11 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.09 Total: -18.55 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.43 -6.55 -37.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198274033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.701 kcal (2) G-P(sol) polarization free energy of solvation -31.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds