Wall clock time and date at job start Tue Mar 31 2020 08:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47146 * 2 1 4 4 H 1.08990 * 109.47548 * 305.00277 * 3 2 1 5 5 C 1.50700 * 109.47275 * 184.99777 * 3 2 1 6 6 H 1.07997 * 120.00203 * 240.00132 * 5 3 2 7 7 C 1.37884 * 119.99711 * 60.00411 * 5 3 2 8 8 N 1.31510 * 119.99748 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00028 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47339 * 59.99627 * 9 7 5 11 11 H 1.48494 * 109.47384 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47294 * 300.00044 * 9 7 5 13 13 N 1.46506 * 109.46874 * 65.00438 * 3 2 1 14 14 C 1.34780 * 119.99630 * 274.99821 * 13 3 2 15 15 O 1.21605 * 119.99880 * 0.02562 * 14 13 3 16 16 C 1.47388 * 120.00007 * 180.02562 * 14 13 3 17 17 C 1.39962 * 120.20890 * 269.99971 * 16 14 13 18 18 F 1.35104 * 120.08499 * 0.02562 * 17 16 14 19 19 C 1.38135 * 119.83677 * 180.27207 * 17 16 14 20 20 C 1.38416 * 120.26691 * 359.47423 * 19 17 16 21 21 C 1.38138 * 120.43473 * 0.54918 * 20 19 17 22 22 C 1.50702 * 119.92272 * 179.72333 * 21 20 19 23 23 C 1.38629 * 120.15521 * 359.70527 * 21 20 19 24 24 O 1.35655 * 120.13811 * 180.02562 * 23 21 20 25 25 C 1.42907 * 116.99984 * 269.98104 * 24 23 21 26 26 H 1.09003 * 109.47053 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47156 * 299.99302 * 1 2 3 28 28 H 1.09003 * 109.47107 * 60.00028 * 1 2 3 29 29 H 1.09005 * 109.47440 * 240.00039 * 2 1 3 30 30 H 1.08997 * 109.47455 * 120.00212 * 2 1 3 31 31 H 0.97002 * 119.99835 * 180.02562 * 8 7 5 32 32 H 0.96998 * 120.00107 * 95.00196 * 13 3 2 33 33 H 1.08002 * 119.86942 * 179.72669 * 19 17 16 34 34 H 1.08003 * 119.78763 * 180.30029 * 20 19 17 35 35 H 1.09002 * 109.47380 * 269.98262 * 22 21 20 36 36 H 1.08997 * 109.47048 * 29.98205 * 22 21 20 37 37 H 1.09000 * 109.46822 * 149.98286 * 22 21 20 38 38 H 1.08998 * 109.47052 * 180.02562 * 25 24 23 39 39 H 1.09006 * 109.46735 * 299.99876 * 25 24 23 40 40 H 1.08998 * 109.47000 * 59.99348 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3367 -2.1728 9 14 6.0049 0.8813 -1.3819 10 1 6.5976 0.1474 -0.2350 11 1 6.3978 0.2168 -2.6504 12 1 6.4995 2.2816 -1.3821 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6643 1.3671 15 8 -0.3417 2.6318 0.4320 16 6 0.0454 3.3237 2.6263 17 6 -0.5894 2.5926 3.6370 18 9 -0.8470 1.2779 3.4620 19 6 -0.9563 3.2196 4.8119 20 6 -0.6891 4.5649 4.9976 21 6 -0.0636 5.2973 4.0074 22 6 0.2162 6.7629 4.2194 23 6 0.3077 4.6872 2.8192 24 8 0.9224 5.4067 1.8472 25 6 0.0829 6.0397 0.8794 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.8292 -0.0617 -2.9495 32 1 2.2720 2.1231 1.9978 33 1 -1.4501 2.6569 5.5903 34 1 -0.9751 5.0462 5.9212 35 1 -0.6313 7.3496 3.8648 36 1 0.3709 6.9533 5.2814 37 1 1.1112 7.0457 3.6653 38 1 0.6997 6.5800 0.1613 39 1 -0.5039 5.2837 0.3575 40 1 -0.5875 6.7376 1.3809 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198274033.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:40 Heat of formation + Delta-G solvation = -122.177978 kcal Electronic energy + Delta-G solvation = -24653.931945 eV Core-core repulsion = 20961.561593 eV Total energy + Delta-G solvation = -3692.370352 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.07653 -41.59165 -40.15048 -38.24546 -36.99415 -34.40848 -33.65337 -32.78844 -31.62051 -29.05714 -28.41424 -27.16790 -25.55979 -24.50541 -22.99151 -21.99797 -21.20457 -19.53378 -18.99982 -18.40484 -17.73031 -17.43022 -16.99349 -16.80650 -16.37207 -16.27193 -15.98225 -15.68430 -15.41452 -14.89804 -14.65172 -14.39822 -14.24246 -13.91163 -13.54271 -13.25467 -13.21346 -13.04856 -12.97697 -12.92705 -12.68808 -12.60854 -12.30165 -12.22462 -12.11786 -11.65402 -11.25848 -11.12987 -10.86339 -10.56297 -10.01702 -9.75974 -9.56252 -8.18871 -6.36813 -0.20805 -0.06979 1.42645 1.45108 1.52917 1.57955 2.10599 2.32269 2.52356 2.66913 3.09972 3.19885 3.66858 3.79205 3.87246 4.08455 4.23672 4.32471 4.40384 4.41590 4.49479 4.60249 4.68245 4.69467 4.82020 4.85796 4.92796 4.99419 5.06584 5.17356 5.28357 5.35662 5.36040 5.46456 5.54753 5.61401 5.70984 5.83459 6.09766 6.32036 6.67965 6.80848 7.24791 7.40704 8.86669 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.017625 B = 0.005058 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.230461 B = 5534.314229 C = 6249.121006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.280 3.720 4 H 0.000 1.000 5 C -0.551 4.551 6 H 0.067 0.933 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.972 3.028 10 H -0.265 1.265 11 H -0.282 1.282 12 H -0.271 1.271 13 N -0.691 5.691 14 C 0.558 3.442 15 O -0.579 6.579 16 C -0.202 4.202 17 C 0.110 3.890 18 F -0.145 7.145 19 C -0.143 4.143 20 C -0.050 4.050 21 C -0.111 4.111 22 C -0.108 4.108 23 C 0.135 3.865 24 O -0.347 6.347 25 C 0.036 3.964 26 H 0.048 0.952 27 H 0.037 0.963 28 H 0.027 0.973 29 H 0.078 0.922 30 H 0.038 0.962 31 H 0.267 0.733 32 H 0.399 0.601 33 H 0.176 0.824 34 H 0.191 0.809 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.109 0.891 39 H 0.025 0.975 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.367 11.977 17.239 22.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.018 0.982 5 C -0.589 4.589 6 H 0.085 0.915 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.797 3.203 10 H -0.190 1.190 11 H -0.208 1.208 12 H -0.196 1.196 13 N -0.338 5.338 14 C 0.344 3.656 15 O -0.460 6.460 16 C -0.206 4.206 17 C 0.090 3.910 18 F -0.123 7.123 19 C -0.161 4.161 20 C -0.067 4.067 21 C -0.112 4.112 22 C -0.165 4.165 23 C 0.091 3.909 24 O -0.264 6.264 25 C -0.057 4.057 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.233 0.767 33 H 0.194 0.806 34 H 0.209 0.791 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.083 0.917 38 H 0.127 0.873 39 H 0.043 0.957 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.691 11.822 16.321 21.571 hybrid contribution 0.883 -0.812 -0.804 1.445 sum -6.808 11.009 15.517 20.207 Atomic orbital electron populations 1.21685 0.97143 0.99271 1.00046 1.21788 0.93616 0.99060 1.01400 1.18442 0.93994 0.89095 0.80728 0.98238 1.21476 0.91071 1.39411 1.06927 0.91462 1.25767 1.03540 0.94109 0.94774 1.70034 1.37233 1.38052 1.09826 0.85396 0.78756 0.78498 0.77681 1.18992 1.20757 1.19646 1.46307 1.14807 1.54927 1.17736 1.18223 0.82202 0.77959 0.87203 1.90734 1.52511 1.61351 1.41442 1.20515 1.07556 0.96700 0.95852 1.17863 1.00009 0.77830 0.95251 1.91507 1.91949 1.33012 1.95849 1.21494 1.02479 0.96735 0.95413 1.21434 0.94042 0.91745 0.99486 1.20583 0.98685 0.99291 0.92593 1.20797 1.02813 0.88278 1.04572 1.18510 0.94818 0.87178 0.90417 1.85899 1.34339 1.66487 1.39701 1.23169 0.95612 0.96329 0.90636 0.93317 0.94368 0.95381 0.90400 0.94313 0.92421 0.76734 0.80628 0.79144 0.89543 0.88065 0.91733 0.87276 0.95659 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.12 8.51 71.98 0.61 -5.51 16 2 C -0.12 -6.33 5.45 30.59 0.17 -6.17 16 3 C 0.28 15.43 2.24 44.24 0.10 15.53 16 4 H 0.00 -0.02 7.58 -2.39 -0.02 -0.03 16 5 C -0.55 -30.73 8.73 25.60 0.22 -30.50 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.02 1.02 5.29 84.66 0.45 1.47 16 8 N -0.91 -53.47 11.29 21.45 0.24 -53.23 16 9 Si 0.97 43.26 29.54 68.60 2.03 45.29 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 13 N -0.69 -32.75 5.02 -449.41 -2.26 -35.00 16 14 C 0.56 25.58 5.00 86.65 0.43 26.01 16 15 O -0.58 -30.56 13.98 -4.05 -0.06 -30.62 16 16 C -0.20 -7.27 5.64 -19.98 -0.11 -7.38 16 17 C 0.11 3.39 7.29 22.66 0.17 3.55 16 18 F -0.14 -5.08 16.83 44.97 0.76 -4.33 16 19 C -0.14 -2.76 10.01 22.29 0.22 -2.54 16 20 C -0.05 -0.73 9.67 22.29 0.22 -0.51 16 21 C -0.11 -2.22 5.89 -19.79 -0.12 -2.33 16 22 C -0.11 -1.42 9.79 71.24 0.70 -0.72 16 23 C 0.14 4.09 5.70 22.84 0.13 4.22 16 24 O -0.35 -11.32 8.91 -89.70 -0.80 -12.11 16 25 C 0.04 0.99 11.13 113.37 1.26 2.25 16 26 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.04 1.87 5.64 -2.39 -0.01 1.86 16 28 H 0.03 1.45 7.84 -2.39 -0.02 1.44 16 29 H 0.08 4.49 5.95 -2.38 -0.01 4.48 16 30 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.27 14.74 8.31 -92.71 -0.77 13.96 16 32 H 0.40 17.11 8.52 -92.71 -0.79 16.32 16 33 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.19 0.92 8.06 -2.91 -0.02 0.90 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.10 0.74 8.08 -2.39 -0.02 0.72 16 37 H 0.06 1.05 7.53 -2.39 -0.02 1.03 16 38 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 39 H 0.02 0.85 7.88 -2.38 -0.02 0.83 16 40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -74.23 339.12 4.63 -69.59 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.27 Total: 23.03 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 4.45 Total: -2.62 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -2.01 Total: -88.23 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -0.86 Total: -42.74 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.76 Total: -4.33 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -74.23 4.63 -69.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198274033.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.584 kcal (2) G-P(sol) polarization free energy of solvation -74.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds