Wall clock time and date at job start Tue Mar 31 2020 06:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35872 * 127.01597 * 2 1 4 4 N 1.40552 * 126.78784 * 359.92702 * 3 2 1 5 5 C 1.34773 * 119.99886 * 180.27587 * 4 3 2 6 6 O 1.21597 * 120.00026 * 359.72808 * 5 4 3 7 7 N 1.34777 * 120.00117 * 179.72077 * 5 4 3 8 8 C 1.47419 * 125.64606 * 0.03202 * 7 5 4 9 9 C 1.54913 * 104.83316 * 204.08860 * 8 7 5 10 10 C 1.55168 * 101.57637 * 322.98690 * 9 8 7 11 11 O 1.42900 * 110.72023 * 277.13635 * 10 9 8 12 12 C 1.50703 * 110.71358 * 154.04237 * 10 9 8 13 13 H 1.08002 * 120.00045 * 268.64504 * 12 10 9 14 14 C 1.37879 * 119.99796 * 88.65297 * 12 10 9 15 15 N 1.31519 * 119.99722 * 173.91098 * 14 12 10 16 16 Si 1.86797 * 120.00209 * 353.91228 * 14 12 10 17 17 H 1.48495 * 109.47351 * 86.06876 * 16 14 12 18 18 H 1.48502 * 109.46914 * 206.07369 * 16 14 12 19 19 H 1.48505 * 109.46821 * 326.07150 * 16 14 12 20 20 C 1.47018 * 125.64816 * 179.71366 * 7 5 4 21 21 N 1.34023 * 106.41892 * 180.19359 * 3 2 1 22 22 N 1.28591 * 109.04907 * 359.61903 * 21 3 2 23 23 N 1.28697 * 110.37339 * 0.39140 * 22 21 3 24 24 C 1.46499 * 125.90820 * 179.79173 * 23 22 21 25 25 H 1.08999 * 109.46868 * 90.00201 * 1 2 3 26 26 H 1.09001 * 109.47274 * 209.99659 * 1 2 3 27 27 H 1.08999 * 109.47240 * 330.00044 * 1 2 3 28 28 H 0.97003 * 119.99548 * 359.97438 * 4 3 2 29 29 H 1.09001 * 110.36805 * 322.92472 * 8 7 5 30 30 H 1.08996 * 110.37364 * 85.24611 * 8 7 5 31 31 H 1.09001 * 111.00686 * 81.06022 * 9 8 7 32 32 H 1.08996 * 111.00665 * 204.88004 * 9 8 7 33 33 H 0.96700 * 113.99766 * 174.41516 * 11 10 9 34 34 H 0.96995 * 119.99712 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.88454 * 298.40299 * 20 7 5 36 36 H 1.09000 * 109.88426 * 59.56778 * 20 7 5 37 37 H 1.09005 * 109.47054 * 269.96332 * 24 23 22 38 38 H 1.08998 * 109.47107 * 29.96175 * 24 23 22 39 39 H 1.09004 * 109.46914 * 149.96633 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3250 1.0849 0.0000 4 7 1.9329 2.4346 -0.0014 5 6 2.8658 3.4073 -0.0069 6 8 4.0467 3.1172 -0.0055 7 7 2.4900 4.7016 -0.0139 8 6 1.0999 5.1925 -0.0158 9 6 1.1808 6.6101 -0.6351 10 6 2.5228 7.1280 -0.0531 11 8 2.3353 7.6475 1.2649 12 6 3.1270 8.1731 -0.9552 13 1 3.8204 7.8819 -1.7303 14 6 2.7948 9.5011 -0.7908 15 7 3.4102 10.4251 -1.4960 16 14 1.4707 9.9881 0.4335 17 1 2.0752 10.1432 1.7810 18 1 0.8581 11.2744 0.0146 19 1 0.4260 8.9336 0.4782 20 6 3.3983 5.8576 -0.0144 21 7 3.5795 0.6134 -0.0043 22 7 3.5448 -0.6720 0.0012 23 7 2.3267 -1.0873 0.0009 24 6 1.8964 -2.4877 0.0019 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 0.9909 2.6660 -0.0029 29 1 0.4703 4.5466 -0.6278 30 1 0.7146 5.2447 1.0024 31 1 1.2205 6.5596 -1.7232 32 1 0.3465 7.2289 -0.3049 33 1 3.1561 7.9055 1.7063 34 1 3.1763 11.3593 -1.3806 35 1 4.0064 5.8516 0.8902 36 1 4.0397 5.8247 -0.8950 37 1 1.7897 -2.8358 -1.0256 38 1 2.6404 -3.0960 0.5161 39 1 0.9389 -2.5732 0.5158 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206298016.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:32 Heat of formation + Delta-G solvation = 45.384570 kcal Electronic energy + Delta-G solvation = -24024.016085 eV Core-core repulsion = 20391.124504 eV Total energy + Delta-G solvation = -3632.891582 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.30183 -39.97159 -37.90041 -35.29380 -34.77127 -34.50779 -32.37790 -31.95243 -30.15709 -28.45072 -28.01379 -27.30114 -25.31193 -23.17416 -22.09394 -21.38992 -19.90640 -19.50925 -18.13864 -17.54697 -17.47017 -16.94609 -16.06215 -15.45272 -15.14766 -14.87100 -14.61112 -14.19340 -13.98842 -13.63125 -13.52534 -13.44555 -13.26782 -12.86802 -12.74835 -12.52237 -12.10667 -11.85651 -11.74011 -11.53480 -11.12695 -11.01350 -10.81245 -10.52731 -10.34091 -10.15899 -9.84362 -9.72231 -9.23089 -8.66904 -8.56033 -8.40189 -8.01048 -6.20083 -4.32378 1.37392 2.01928 2.48729 2.69319 3.43132 3.49757 3.61704 3.64331 3.93710 4.22481 4.27734 4.46199 4.46423 4.60395 4.85929 4.97272 5.06834 5.09042 5.11984 5.20457 5.28782 5.48992 5.55506 5.60630 5.73969 5.83022 6.08958 6.41496 6.47160 6.54185 6.57721 6.63542 6.74012 7.01734 7.16919 7.44757 8.09386 8.12234 8.52047 8.62607 8.81997 8.84274 9.40381 10.88997 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.040042 B = 0.003392 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.093257 B = 8252.885272 C = 8633.298481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.071 4.071 3 C 0.249 3.751 4 N -0.651 5.651 5 C 0.712 3.288 6 O -0.546 6.546 7 N -0.624 5.624 8 C 0.095 3.905 9 C -0.120 4.120 10 C 0.219 3.781 11 O -0.565 6.565 12 C -0.553 4.553 13 H 0.081 0.919 14 C 0.075 3.925 15 N -0.887 5.887 16 Si 0.946 3.054 17 H -0.290 1.290 18 H -0.325 1.325 19 H -0.268 1.268 20 C 0.112 3.888 21 N -0.240 5.240 22 N -0.075 5.075 23 N -0.291 5.291 24 C 0.086 3.914 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.412 0.588 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.374 0.626 34 H 0.267 0.733 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.819 -22.173 3.955 25.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.205 4.205 3 C 0.017 3.983 4 N -0.304 5.304 5 C 0.414 3.586 6 O -0.419 6.419 7 N -0.362 5.362 8 C -0.028 4.028 9 C -0.159 4.159 10 C 0.179 3.821 11 O -0.373 6.373 12 C -0.590 4.590 13 H 0.099 0.901 14 C -0.131 4.131 15 N -0.522 5.522 16 Si 0.781 3.219 17 H -0.218 1.218 18 H -0.256 1.256 19 H -0.194 1.194 20 C -0.010 4.010 21 N -0.110 5.110 22 N -0.055 5.055 23 N -0.088 5.088 24 C -0.056 4.056 25 H 0.097 0.903 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.249 0.751 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.222 0.778 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.967 -22.738 3.756 25.108 hybrid contribution -1.674 0.707 0.654 1.931 sum -11.640 -22.030 4.410 25.304 Atomic orbital electron populations 1.20202 0.85722 1.03826 1.03273 1.21227 0.95517 0.85999 1.17733 1.18112 0.90238 0.84788 1.05133 1.41922 1.09744 1.00585 1.78144 1.15402 0.84681 0.79614 0.78946 1.91039 1.14805 1.80723 1.55306 1.47691 1.08903 1.03241 1.76399 1.22428 0.82752 0.97132 1.00444 1.23118 0.99631 0.92425 1.00678 1.20114 0.91244 0.89660 0.81078 1.86112 1.36768 1.83221 1.31166 1.21181 1.29184 0.90602 1.18030 0.90057 1.25120 0.95968 0.96125 0.95848 1.69968 1.40491 1.01084 1.40633 0.85777 0.81662 0.74826 0.79612 1.21786 1.25596 1.19375 1.22794 0.92727 0.83667 1.01819 1.75525 1.18169 0.99379 1.17953 1.78376 1.01242 1.06442 1.19426 1.47011 1.04965 1.08052 1.48813 1.22201 1.02496 0.76059 1.04829 0.90277 0.90834 0.89949 0.75128 0.92251 0.91630 0.89583 0.89756 0.77783 0.92358 0.92216 0.90721 0.89184 0.88032 0.88547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.04 36.00 0.36 -0.03 16 2 C -0.07 -0.76 7.05 -81.51 -0.57 -1.33 16 3 C 0.25 3.83 7.76 -153.27 -1.19 2.64 16 4 N -0.65 -9.67 5.42 -15.90 -0.09 -9.75 16 5 C 0.71 13.69 8.46 -86.92 -0.74 12.96 16 6 O -0.55 -12.88 15.44 5.28 0.08 -12.80 16 7 N -0.62 -11.48 3.33 -176.24 -0.59 -12.07 16 8 C 0.10 1.47 6.56 -2.53 -0.02 1.45 16 9 C -0.12 -2.26 5.88 -24.57 -0.14 -2.40 16 10 C 0.22 4.73 0.68 -89.92 -0.06 4.67 16 11 O -0.56 -11.80 8.74 -35.23 -0.31 -12.11 16 12 C -0.55 -14.46 8.82 -34.44 -0.30 -14.77 16 13 H 0.08 2.35 7.81 -52.49 -0.41 1.94 16 14 C 0.07 2.03 5.46 -17.82 -0.10 1.93 16 15 N -0.89 -26.04 13.96 55.43 0.77 -25.27 16 16 Si 0.95 22.53 24.83 -169.99 -4.22 18.31 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.32 -7.99 7.11 56.52 0.40 -7.58 16 19 H -0.27 -6.08 5.19 56.52 0.29 -5.79 16 20 C 0.11 2.33 6.22 -3.06 -0.02 2.31 16 21 N -0.24 -4.50 10.72 31.10 0.33 -4.17 16 22 N -0.08 -1.16 13.15 60.35 0.79 -0.37 16 23 N -0.29 -3.10 3.77 -63.45 -0.24 -3.34 16 24 C 0.09 0.38 11.23 59.85 0.67 1.05 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.24 7.20 -51.93 -0.37 -0.14 16 27 H 0.08 0.39 7.76 -51.93 -0.40 -0.01 16 28 H 0.41 4.47 6.77 -40.82 -0.28 4.19 16 29 H 0.06 0.70 7.30 -51.93 -0.38 0.32 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.09 1.63 8.04 -51.93 -0.42 1.21 16 32 H 0.08 1.60 6.24 -51.93 -0.32 1.27 16 33 H 0.37 7.03 8.97 45.56 0.41 7.44 16 34 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.06 1.22 8.04 -51.93 -0.42 0.81 16 36 H 0.07 1.68 7.66 -51.93 -0.40 1.28 16 37 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.10 0.16 7.16 -51.93 -0.37 -0.22 16 LS Contribution 320.75 15.07 4.83 4.83 Total: -1.00 -37.65 320.75 -5.03 -42.68 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -4.30 Total: 5.59 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -2.11 Total: 8.47 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.99 Total: -54.97 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.23 Total: -24.91 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.22 Total: 18.31 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -37.65 -5.03 -42.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206298016.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.063 kcal (2) G-P(sol) polarization free energy of solvation -37.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds