Wall clock time and date at job start Tue Mar 31 2020 06:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35872 * 127.01597 * 2 1 4 4 N 1.40552 * 126.78784 * 359.92702 * 3 2 1 5 5 C 1.34773 * 119.99886 * 180.27587 * 4 3 2 6 6 O 1.21597 * 120.00026 * 359.72808 * 5 4 3 7 7 N 1.34777 * 120.00117 * 179.72077 * 5 4 3 8 8 C 1.47419 * 125.64606 * 0.03202 * 7 5 4 9 9 C 1.54913 * 104.83316 * 204.08860 * 8 7 5 10 10 C 1.55168 * 101.57637 * 322.98690 * 9 8 7 11 11 O 1.42900 * 110.72023 * 277.13635 * 10 9 8 12 12 C 1.50703 * 110.71358 * 154.04237 * 10 9 8 13 13 H 1.08002 * 120.00045 * 268.64504 * 12 10 9 14 14 C 1.37879 * 119.99796 * 88.65297 * 12 10 9 15 15 N 1.31519 * 119.99722 * 173.91098 * 14 12 10 16 16 Si 1.86797 * 120.00209 * 353.91228 * 14 12 10 17 17 H 1.48495 * 109.47351 * 86.06876 * 16 14 12 18 18 H 1.48502 * 109.46914 * 206.07369 * 16 14 12 19 19 H 1.48505 * 109.46821 * 326.07150 * 16 14 12 20 20 C 1.47018 * 125.64816 * 179.71366 * 7 5 4 21 21 N 1.34023 * 106.41892 * 180.19359 * 3 2 1 22 22 N 1.28591 * 109.04907 * 359.61903 * 21 3 2 23 23 N 1.28697 * 110.37339 * 0.39140 * 22 21 3 24 24 C 1.46499 * 125.90820 * 179.79173 * 23 22 21 25 25 H 1.08999 * 109.46868 * 90.00201 * 1 2 3 26 26 H 1.09001 * 109.47274 * 209.99659 * 1 2 3 27 27 H 1.08999 * 109.47240 * 330.00044 * 1 2 3 28 28 H 0.97003 * 119.99548 * 359.97438 * 4 3 2 29 29 H 1.09001 * 110.36805 * 322.92472 * 8 7 5 30 30 H 1.08996 * 110.37364 * 85.24611 * 8 7 5 31 31 H 1.09001 * 111.00686 * 81.06022 * 9 8 7 32 32 H 1.08996 * 111.00665 * 204.88004 * 9 8 7 33 33 H 0.96700 * 113.99766 * 174.41516 * 11 10 9 34 34 H 0.96995 * 119.99712 * 179.97438 * 15 14 12 35 35 H 1.09000 * 109.88454 * 298.40299 * 20 7 5 36 36 H 1.09000 * 109.88426 * 59.56778 * 20 7 5 37 37 H 1.09005 * 109.47054 * 269.96332 * 24 23 22 38 38 H 1.08998 * 109.47107 * 29.96175 * 24 23 22 39 39 H 1.09004 * 109.46914 * 149.96633 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3250 1.0849 0.0000 4 7 1.9329 2.4346 -0.0014 5 6 2.8658 3.4073 -0.0069 6 8 4.0467 3.1172 -0.0055 7 7 2.4900 4.7016 -0.0139 8 6 1.0999 5.1925 -0.0158 9 6 1.1808 6.6101 -0.6351 10 6 2.5228 7.1280 -0.0531 11 8 2.3353 7.6475 1.2649 12 6 3.1270 8.1731 -0.9552 13 1 3.8204 7.8819 -1.7303 14 6 2.7948 9.5011 -0.7908 15 7 3.4102 10.4251 -1.4960 16 14 1.4707 9.9881 0.4335 17 1 2.0752 10.1432 1.7810 18 1 0.8581 11.2744 0.0146 19 1 0.4260 8.9336 0.4782 20 6 3.3983 5.8576 -0.0144 21 7 3.5795 0.6134 -0.0043 22 7 3.5448 -0.6720 0.0012 23 7 2.3267 -1.0873 0.0009 24 6 1.8964 -2.4877 0.0019 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 0.9909 2.6660 -0.0029 29 1 0.4703 4.5466 -0.6278 30 1 0.7146 5.2447 1.0024 31 1 1.2205 6.5596 -1.7232 32 1 0.3465 7.2289 -0.3049 33 1 3.1561 7.9055 1.7063 34 1 3.1763 11.3593 -1.3806 35 1 4.0064 5.8516 0.8902 36 1 4.0397 5.8247 -0.8950 37 1 1.7897 -2.8358 -1.0256 38 1 2.6404 -3.0960 0.5161 39 1 0.9389 -2.5732 0.5158 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206298016.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:32 Heat of formation + Delta-G solvation = 13.329988 kcal Electronic energy + Delta-G solvation = -24025.406076 eV Core-core repulsion = 20391.124504 eV Total energy + Delta-G solvation = -3634.281573 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.25534 -41.42454 -39.47179 -36.47767 -36.33807 -35.42164 -34.44279 -32.90725 -31.61889 -29.98694 -28.79913 -28.04506 -27.08145 -24.60274 -23.30932 -22.29212 -21.53832 -20.82514 -19.67093 -19.13912 -18.61286 -17.82411 -17.19884 -16.89807 -16.81794 -16.47741 -16.16599 -15.30335 -15.07176 -15.00151 -14.55999 -14.27073 -14.07219 -14.02157 -13.93813 -13.79054 -13.26912 -13.23368 -13.16552 -12.76757 -12.73201 -12.31054 -12.22685 -12.16800 -11.89965 -11.77666 -11.24831 -11.18942 -10.75362 -10.62259 -10.40623 -9.77057 -9.19149 -8.32541 -6.48165 0.51454 1.11195 1.32355 1.55268 1.55797 1.66810 1.76972 2.24395 2.47039 2.74636 2.99209 3.44130 3.52316 3.77440 3.78955 3.81607 4.02975 4.24926 4.31241 4.35930 4.43756 4.57047 4.60402 4.66867 4.79150 4.82380 4.96009 4.97620 5.10816 5.14155 5.22387 5.41690 5.46418 5.53772 5.70084 5.88901 6.05756 6.59273 6.78578 6.93959 7.29706 7.36338 7.59329 8.80989 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.040042 B = 0.003392 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.093257 B = 8252.885272 C = 8633.298481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.031 4.031 3 C 0.202 3.798 4 N -0.630 5.630 5 C 0.710 3.290 6 O -0.601 6.601 7 N -0.625 5.625 8 C 0.102 3.898 9 C -0.119 4.119 10 C 0.221 3.779 11 O -0.559 6.559 12 C -0.553 4.553 13 H 0.034 0.966 14 C 0.023 3.977 15 N -0.940 5.940 16 Si 1.010 2.990 17 H -0.283 1.283 18 H -0.336 1.336 19 H -0.242 1.242 20 C 0.120 3.880 21 N -0.308 5.308 22 N -0.113 5.113 23 N -0.278 5.278 24 C 0.069 3.931 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.096 0.904 28 H 0.432 0.568 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.382 0.618 34 H 0.268 0.732 35 H 0.056 0.944 36 H 0.042 0.958 37 H 0.110 0.890 38 H 0.107 0.893 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.389 -24.826 5.433 30.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.167 4.167 3 C -0.030 4.030 4 N -0.285 5.285 5 C 0.411 3.589 6 O -0.478 6.478 7 N -0.362 5.362 8 C -0.019 4.019 9 C -0.157 4.157 10 C 0.180 3.820 11 O -0.368 6.368 12 C -0.590 4.590 13 H 0.053 0.947 14 C -0.177 4.177 15 N -0.577 5.577 16 Si 0.841 3.159 17 H -0.209 1.209 18 H -0.268 1.268 19 H -0.167 1.167 20 C -0.004 4.004 21 N -0.177 5.177 22 N -0.092 5.092 23 N -0.075 5.075 24 C -0.070 4.070 25 H 0.118 0.882 26 H 0.125 0.875 27 H 0.115 0.885 28 H 0.273 0.727 29 H 0.124 0.876 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.232 0.768 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.580 -25.484 5.243 29.824 hybrid contribution -0.248 1.355 0.129 1.384 sum -14.828 -24.129 5.372 28.826 Atomic orbital electron populations 1.20554 0.81233 1.06225 1.05255 1.22038 0.97521 0.84303 1.12857 1.18553 0.90499 0.85625 1.08341 1.41468 1.09799 0.99848 1.77377 1.15559 0.84615 0.80155 0.78540 1.91003 1.17482 1.81644 1.57629 1.47577 1.09760 1.02505 1.76356 1.22597 0.81438 0.95515 1.02355 1.23026 0.97523 0.94741 1.00438 1.19934 0.93048 0.88355 0.80619 1.86069 1.37396 1.83053 1.30272 1.21393 1.28055 0.92060 1.17537 0.94724 1.25970 0.98033 0.95976 0.97688 1.70106 1.42798 1.01565 1.43272 0.84753 0.79460 0.74454 0.77210 1.20941 1.26831 1.16691 1.22429 0.92840 0.84842 1.00248 1.75409 1.21042 1.01106 1.20096 1.78263 1.03532 1.05502 1.21921 1.47617 1.03856 1.10214 1.45859 1.22808 1.04420 0.72818 1.06913 0.88243 0.87501 0.88547 0.72702 0.87640 0.89433 0.90265 0.88900 0.76820 0.92345 0.92540 0.93910 0.87124 0.87431 0.84652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.04 71.24 0.72 0.33 16 2 C -0.03 -0.56 7.05 41.34 0.29 -0.27 16 3 C 0.20 6.00 7.76 131.27 1.02 7.02 16 4 N -0.63 -17.55 5.42 -322.48 -1.75 -19.30 16 5 C 0.71 27.18 8.46 179.06 1.51 28.70 16 6 O -0.60 -29.59 15.44 -4.02 -0.06 -29.65 16 7 N -0.62 -22.31 3.33 -829.75 -2.76 -25.07 16 8 C 0.10 2.75 6.56 86.86 0.57 3.32 16 9 C -0.12 -4.18 5.88 31.99 0.19 -3.99 16 10 C 0.22 9.43 0.68 -10.34 -0.01 9.42 16 11 O -0.56 -22.16 8.74 -148.98 -1.30 -23.46 16 12 C -0.55 -29.89 8.82 25.60 0.23 -29.66 16 13 H 0.03 2.14 7.81 -2.91 -0.02 2.12 16 14 C 0.02 1.27 5.46 84.65 0.46 1.73 16 15 N -0.94 -57.21 13.96 21.45 0.30 -56.91 16 16 Si 1.01 45.74 24.83 68.60 1.70 47.45 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.34 -15.83 7.11 99.48 0.71 -15.12 16 19 H -0.24 -9.90 5.19 99.48 0.52 -9.38 16 20 C 0.12 5.09 6.22 86.73 0.54 5.63 16 21 N -0.31 -11.85 10.72 -55.52 -0.59 -12.44 16 22 N -0.11 -3.50 13.15 37.02 0.49 -3.01 16 23 N -0.28 -5.28 3.77 -354.65 -1.34 -6.62 16 24 C 0.07 0.34 11.23 127.77 1.44 1.78 16 25 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 26 H 0.11 -0.08 7.20 -2.39 -0.02 -0.10 16 27 H 0.10 0.32 7.76 -2.39 -0.02 0.31 16 28 H 0.43 7.69 6.77 -92.71 -0.63 7.06 16 29 H 0.11 1.92 7.30 -2.39 -0.02 1.90 16 30 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.08 2.88 8.04 -2.39 -0.02 2.86 16 32 H 0.09 3.13 6.24 -2.39 -0.01 3.12 16 33 H 0.38 13.83 8.97 -74.06 -0.66 13.17 16 34 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 35 H 0.06 2.38 8.04 -2.39 -0.02 2.37 16 36 H 0.04 2.05 7.66 -2.39 -0.02 2.03 16 37 H 0.11 0.18 8.14 -2.38 -0.02 0.16 16 38 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.14 -0.35 7.16 -2.38 -0.02 -0.37 16 Total: -1.00 -90.53 320.75 1.26 -89.26 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -0.37 Total: 15.77 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 6.95 Total: 24.01 kcal Atomic # 7 Polarization: -117.71 SS G_CDS: -5.65 Total: -123.37 kcal Atomic # 8 Polarization: -51.75 SS G_CDS: -1.36 Total: -53.11 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.70 Total: 47.45 kcal Total: -90.53 1.26 -89.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206298016.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.591 kcal (2) G-P(sol) polarization free energy of solvation -90.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds