Wall clock time and date at job start Tue Mar 31 2020 06:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32654 * 1 3 3 C 1.50695 * 120.00068 * 2 1 4 4 C 1.47688 * 119.99824 * 180.02562 * 2 1 3 5 5 C 1.39489 * 120.18354 * 105.27551 * 4 2 1 6 6 C 1.37956 * 119.92733 * 180.29566 * 5 4 2 7 7 C 1.38461 * 120.31168 * 359.70421 * 6 5 4 8 8 C 1.38121 * 120.37359 * 359.97438 * 7 6 5 9 9 C 1.38792 * 120.05796 * 0.02562 * 8 7 6 10 10 N 1.39401 * 120.15060 * 179.97438 * 9 8 7 11 11 C 1.39771 * 120.00489 * 344.09173 * 10 9 8 12 12 C 1.38788 * 120.10212 * 329.40706 * 11 10 9 13 13 C 1.38180 * 119.98826 * 180.02562 * 12 11 10 14 14 C 1.38351 * 120.20710 * 359.97438 * 13 12 11 15 15 C 1.38174 * 120.21872 * 359.97438 * 14 13 12 16 16 C 1.38721 * 120.00694 * 0.27315 * 15 14 13 17 17 O 1.35776 * 120.10867 * 179.72562 * 16 15 14 18 18 C 1.34810 * 116.99845 * 5.79215 * 17 16 15 19 19 H 1.08005 * 119.99762 * 354.86962 * 18 17 16 20 20 C 1.38621 * 120.00082 * 174.86608 * 18 17 16 21 21 N 1.31583 * 119.99921 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00106 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47161 * 89.99857 * 22 20 18 24 24 H 1.48502 * 109.47254 * 209.99755 * 22 20 18 25 25 H 1.48501 * 109.46931 * 329.99850 * 22 20 18 26 26 H 1.08001 * 119.99953 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.00209 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47291 * 270.00094 * 3 2 1 29 29 H 1.08999 * 109.47291 * 30.00151 * 3 2 1 30 30 H 1.09001 * 109.47467 * 150.00002 * 3 2 1 31 31 H 1.07995 * 120.03553 * 359.97438 * 5 4 2 32 32 H 1.08004 * 119.84485 * 179.72214 * 6 5 4 33 33 H 1.07999 * 119.81053 * 180.02562 * 7 6 5 34 34 H 1.07994 * 119.97101 * 180.02562 * 8 7 6 35 35 H 0.97003 * 119.99757 * 164.08478 * 10 9 8 36 36 H 1.08003 * 120.00673 * 0.02641 * 12 11 10 37 37 H 1.07993 * 119.89539 * 180.02562 * 13 12 11 38 38 H 1.08008 * 119.89312 * 180.02562 * 14 13 12 39 39 H 1.08000 * 119.99560 * 180.02562 * 15 14 13 40 40 H 0.96997 * 120.00082 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3265 0.0000 0.0000 3 6 2.0800 1.3051 0.0000 4 6 2.0649 -1.2790 -0.0006 5 6 2.6907 -1.7271 -1.1639 6 6 3.3739 -2.9256 -1.1602 7 6 3.4471 -3.6845 -0.0044 8 6 2.8378 -3.2498 1.1564 9 6 2.1464 -2.0464 1.1700 10 7 1.5303 -1.6060 2.3403 11 6 1.3150 -2.4976 3.3950 12 6 1.0972 -3.8435 3.1353 13 6 0.8841 -4.7227 4.1797 14 6 0.8874 -4.2662 5.4857 15 6 1.1044 -2.9283 5.7541 16 6 1.3143 -2.0368 4.7122 17 8 1.5221 -0.7207 4.9733 18 6 1.6323 -0.3637 6.2686 19 1 1.4725 -1.0962 7.0460 20 6 1.9508 0.9434 6.6026 21 7 2.0588 1.2917 7.8669 22 14 2.2266 2.2104 5.2580 23 1 0.9381 2.8710 4.9285 24 1 3.1987 3.2291 5.7295 25 1 2.7622 1.5383 4.0469 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 2.2617 1.6197 -1.0277 29 1 1.4910 2.0647 0.5138 30 1 3.0325 1.1748 0.5138 31 1 2.6360 -1.1388 -2.0680 32 1 3.8541 -3.2734 -2.0629 33 1 3.9844 -4.6214 -0.0105 34 1 2.8994 -3.8468 2.0542 35 1 1.2511 -0.6807 2.4228 36 1 1.0944 -4.2035 2.1170 37 1 0.7152 -5.7697 3.9759 38 1 0.7207 -4.9580 6.2982 39 1 1.1067 -2.5758 6.7750 40 1 2.2813 2.2064 8.1007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212601864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:58 Heat of formation + Delta-G solvation = 49.147471 kcal Electronic energy + Delta-G solvation = -23160.513157 eV Core-core repulsion = 19906.341259 eV Total energy + Delta-G solvation = -3254.171898 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.13328 -38.88651 -36.76188 -35.18864 -34.85533 -32.43362 -30.18952 -29.90322 -29.32012 -27.54772 -27.10274 -25.34087 -23.02617 -22.54462 -21.37345 -20.83327 -18.88734 -18.01092 -17.56564 -16.98856 -16.19295 -15.65779 -14.86976 -14.63308 -14.46363 -14.16973 -13.98211 -13.95573 -13.78413 -13.35358 -13.16688 -13.04534 -12.71436 -12.34780 -12.25569 -12.09806 -11.67944 -11.56825 -11.38460 -11.06414 -10.92778 -10.80305 -10.69209 -10.43595 -10.24392 -9.50474 -9.10300 -8.93434 -8.57010 -8.41156 -7.68362 -6.67024 -6.46477 -4.11791 1.44801 1.56879 2.12141 2.21508 2.26531 3.16366 3.18939 3.32555 3.72191 3.97857 4.17274 4.43714 4.69007 4.78770 5.04339 5.08059 5.17822 5.21550 5.46701 5.49501 5.59230 5.61510 5.69129 5.74645 5.79654 5.86631 5.97529 6.01438 6.05569 6.19354 6.35301 6.40081 6.51981 6.58741 6.68697 6.78313 6.81837 6.84258 6.99365 7.10849 7.23566 7.46626 7.60996 7.87135 7.98325 8.07627 8.88335 9.48256 10.61203 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012314 B = 0.006429 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.314958 B = 4354.122638 C = 6021.524015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.083 4.083 3 C -0.118 4.118 4 C -0.128 4.128 5 C -0.066 4.066 6 C -0.180 4.180 7 C -0.078 4.078 8 C -0.190 4.190 9 C 0.223 3.777 10 N -0.662 5.662 11 C 0.098 3.902 12 C -0.124 4.124 13 C -0.176 4.176 14 C -0.098 4.098 15 C -0.199 4.199 16 C 0.130 3.870 17 O -0.219 6.219 18 C -0.386 4.386 19 H 0.107 0.893 20 C 0.064 3.936 21 N -0.878 5.878 22 Si 0.901 3.099 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.259 1.259 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.136 0.864 35 H 0.411 0.589 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.136 0.864 40 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.198 -6.180 -15.275 16.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.083 4.083 3 C -0.174 4.174 4 C -0.132 4.132 5 C -0.085 4.085 6 C -0.200 4.200 7 C -0.097 4.097 8 C -0.212 4.212 9 C 0.120 3.880 10 N -0.281 5.281 11 C 0.001 3.999 12 C -0.145 4.145 13 C -0.196 4.196 14 C -0.117 4.117 15 C -0.219 4.219 16 C 0.076 3.924 17 O -0.124 6.124 18 C -0.461 4.461 19 H 0.124 0.876 20 C -0.139 4.139 21 N -0.516 5.516 22 Si 0.726 3.274 23 H -0.199 1.199 24 H -0.207 1.207 25 H -0.183 1.183 26 H 0.117 0.883 27 H 0.120 0.880 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.154 0.846 35 H 0.248 0.752 36 H 0.143 0.857 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.154 0.846 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.133 -5.869 -15.159 16.256 hybrid contribution 0.032 0.967 -0.135 0.976 sum -0.101 -4.902 -15.294 16.061 Atomic orbital electron populations 1.24161 0.94734 1.01892 1.00990 1.20372 0.94322 0.93142 1.00486 1.20869 1.00576 0.94101 1.01894 1.18412 1.05591 0.96603 0.92596 1.20866 0.95666 0.95692 0.96277 1.20776 1.04404 0.96402 0.98456 1.20925 0.97430 0.98962 0.92369 1.21096 1.02254 0.98053 0.99814 1.17845 0.91254 0.93396 0.85511 1.41894 1.61867 1.12343 1.11998 1.16930 1.08160 0.90228 0.84540 1.20669 1.03063 0.91425 0.99320 1.20516 1.07974 0.98643 0.92429 1.20787 0.99798 0.94927 0.96165 1.21137 1.07807 0.93241 0.99700 1.18845 0.97240 0.84934 0.91368 1.83500 1.80128 1.19083 1.29715 1.20717 1.48813 0.97306 0.79290 0.87586 1.24425 0.95706 0.97036 0.96730 1.69648 1.46297 1.19898 1.15803 0.86249 0.78617 0.80408 0.82109 1.19870 1.20747 1.18312 0.88327 0.88048 0.91422 0.91634 0.91666 0.86457 0.86684 0.86374 0.84595 0.75172 0.85745 0.87048 0.87061 0.84603 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 13.89 28.84 0.40 -1.96 16 2 C -0.08 -1.15 4.29 -102.66 -0.44 -1.59 16 3 C -0.12 -1.49 10.03 36.00 0.36 -1.12 16 4 C -0.13 -1.90 5.28 -104.83 -0.55 -2.45 16 5 C -0.07 -0.86 9.78 -39.22 -0.38 -1.24 16 6 C -0.18 -2.20 10.03 -39.60 -0.40 -2.59 16 7 C -0.08 -1.01 10.03 -39.54 -0.40 -1.40 16 8 C -0.19 -2.91 7.69 -39.42 -0.30 -3.22 16 9 C 0.22 3.70 6.33 -83.48 -0.53 3.17 16 10 N -0.66 -12.29 5.24 -8.08 -0.04 -12.33 16 11 C 0.10 1.92 6.11 -83.55 -0.51 1.41 16 12 C -0.12 -2.12 7.41 -39.40 -0.29 -2.41 16 13 C -0.18 -2.86 10.04 -39.56 -0.40 -3.25 16 14 C -0.10 -1.71 10.04 -39.56 -0.40 -2.11 16 15 C -0.20 -4.17 9.16 -39.43 -0.36 -4.53 16 16 C 0.13 2.92 6.67 -38.91 -0.26 2.66 16 17 O -0.22 -5.57 8.08 0.03 0.00 -5.57 16 18 C -0.39 -10.62 9.94 30.87 0.31 -10.31 16 19 H 0.11 2.98 5.44 -52.48 -0.29 2.70 16 20 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 21 N -0.88 -25.08 13.96 55.48 0.77 -24.30 16 22 Si 0.90 21.32 28.62 -169.99 -4.86 16.45 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.26 -6.13 7.11 56.52 0.40 -5.73 16 26 H 0.10 1.31 8.05 -52.49 -0.42 0.89 16 27 H 0.10 1.16 8.05 -52.49 -0.42 0.74 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.80 8.07 -51.93 -0.42 0.38 16 30 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 31 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 32 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.14 2.13 5.42 -52.49 -0.28 1.85 16 35 H 0.41 7.93 7.37 -40.82 -0.30 7.63 16 36 H 0.12 1.92 6.00 -52.48 -0.31 1.61 16 37 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.11 1.65 8.06 -52.48 -0.42 1.22 16 39 H 0.14 2.98 5.64 -52.49 -0.30 2.69 16 40 H 0.28 7.39 8.31 -40.82 -0.34 7.06 16 LS Contribution 338.32 15.07 5.10 5.10 Total: -1.00 -28.63 338.32 -8.12 -36.75 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -4.84 Total: 13.18 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: -4.25 Total: -29.28 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.73 Total: -36.64 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: 0.00 Total: -5.57 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.86 Total: 16.45 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.63 -8.12 -36.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212601864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.893 kcal (2) G-P(sol) polarization free energy of solvation -28.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds