Wall clock time and date at job start Tue Mar 31 2020 06:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32654 * 1 3 3 C 1.50695 * 120.00068 * 2 1 4 4 C 1.47688 * 119.99824 * 180.02562 * 2 1 3 5 5 C 1.39489 * 120.18354 * 105.27551 * 4 2 1 6 6 C 1.37956 * 119.92733 * 180.29566 * 5 4 2 7 7 C 1.38461 * 120.31168 * 359.70421 * 6 5 4 8 8 C 1.38121 * 120.37359 * 359.97438 * 7 6 5 9 9 C 1.38792 * 120.05796 * 0.02562 * 8 7 6 10 10 N 1.39401 * 120.15060 * 179.97438 * 9 8 7 11 11 C 1.39771 * 120.00489 * 344.09173 * 10 9 8 12 12 C 1.38788 * 120.10212 * 329.40706 * 11 10 9 13 13 C 1.38180 * 119.98826 * 180.02562 * 12 11 10 14 14 C 1.38351 * 120.20710 * 359.97438 * 13 12 11 15 15 C 1.38174 * 120.21872 * 359.97438 * 14 13 12 16 16 C 1.38721 * 120.00694 * 0.27315 * 15 14 13 17 17 O 1.35776 * 120.10867 * 179.72562 * 16 15 14 18 18 C 1.34810 * 116.99845 * 5.79215 * 17 16 15 19 19 H 1.08005 * 119.99762 * 354.86962 * 18 17 16 20 20 C 1.38621 * 120.00082 * 174.86608 * 18 17 16 21 21 N 1.31583 * 119.99921 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00106 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47161 * 89.99857 * 22 20 18 24 24 H 1.48502 * 109.47254 * 209.99755 * 22 20 18 25 25 H 1.48501 * 109.46931 * 329.99850 * 22 20 18 26 26 H 1.08001 * 119.99953 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.00209 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.47291 * 270.00094 * 3 2 1 29 29 H 1.08999 * 109.47291 * 30.00151 * 3 2 1 30 30 H 1.09001 * 109.47467 * 150.00002 * 3 2 1 31 31 H 1.07995 * 120.03553 * 359.97438 * 5 4 2 32 32 H 1.08004 * 119.84485 * 179.72214 * 6 5 4 33 33 H 1.07999 * 119.81053 * 180.02562 * 7 6 5 34 34 H 1.07994 * 119.97101 * 180.02562 * 8 7 6 35 35 H 0.97003 * 119.99757 * 164.08478 * 10 9 8 36 36 H 1.08003 * 120.00673 * 0.02641 * 12 11 10 37 37 H 1.07993 * 119.89539 * 180.02562 * 13 12 11 38 38 H 1.08008 * 119.89312 * 180.02562 * 14 13 12 39 39 H 1.08000 * 119.99560 * 180.02562 * 15 14 13 40 40 H 0.96997 * 120.00082 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3265 0.0000 0.0000 3 6 2.0800 1.3051 0.0000 4 6 2.0649 -1.2790 -0.0006 5 6 2.6907 -1.7271 -1.1639 6 6 3.3739 -2.9256 -1.1602 7 6 3.4471 -3.6845 -0.0044 8 6 2.8378 -3.2498 1.1564 9 6 2.1464 -2.0464 1.1700 10 7 1.5303 -1.6060 2.3403 11 6 1.3150 -2.4976 3.3950 12 6 1.0972 -3.8435 3.1353 13 6 0.8841 -4.7227 4.1797 14 6 0.8874 -4.2662 5.4857 15 6 1.1044 -2.9283 5.7541 16 6 1.3143 -2.0368 4.7122 17 8 1.5221 -0.7207 4.9733 18 6 1.6323 -0.3637 6.2686 19 1 1.4725 -1.0962 7.0460 20 6 1.9508 0.9434 6.6026 21 7 2.0588 1.2917 7.8669 22 14 2.2266 2.2104 5.2580 23 1 0.9381 2.8710 4.9285 24 1 3.1987 3.2291 5.7295 25 1 2.7622 1.5383 4.0469 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 2.2617 1.6197 -1.0277 29 1 1.4910 2.0647 0.5138 30 1 3.0325 1.1748 0.5138 31 1 2.6360 -1.1388 -2.0680 32 1 3.8541 -3.2734 -2.0629 33 1 3.9844 -4.6214 -0.0105 34 1 2.8994 -3.8468 2.0542 35 1 1.2511 -0.6807 2.4228 36 1 1.0944 -4.2035 2.1170 37 1 0.7152 -5.7697 3.9759 38 1 0.7207 -4.9580 6.2982 39 1 1.1067 -2.5758 6.7750 40 1 2.2813 2.2064 8.1007 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212601864.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:57 Heat of formation + Delta-G solvation = 35.047904 kcal Electronic energy + Delta-G solvation = -23161.124560 eV Core-core repulsion = 19906.341259 eV Total energy + Delta-G solvation = -3254.783301 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.50661 -40.27662 -38.35336 -36.30231 -36.08164 -34.45746 -31.38583 -31.20825 -30.71345 -28.88098 -28.10011 -27.25605 -24.19284 -23.84742 -22.86013 -22.16816 -20.04624 -19.82671 -19.17147 -18.17128 -17.69112 -16.81430 -16.50660 -16.08043 -15.80062 -15.53760 -15.52000 -15.20927 -14.98975 -14.74199 -14.54522 -14.31106 -14.14773 -14.02319 -13.58317 -13.17685 -13.15779 -12.78646 -12.68249 -12.57703 -12.39490 -12.24058 -12.03296 -11.83782 -11.64126 -11.33231 -10.93702 -10.12207 -9.79250 -9.57243 -9.24317 -8.51625 -8.05842 -6.20678 0.26124 0.43602 0.60655 0.93293 1.19338 1.25531 1.29689 1.44854 2.23175 2.37055 2.74547 2.90024 2.99427 3.16700 3.75960 4.01212 4.07348 4.18031 4.25256 4.27496 4.38904 4.54436 4.57094 4.59960 4.62825 4.70541 4.77049 4.82579 4.93340 5.03345 5.06291 5.15922 5.24859 5.38042 5.47950 5.54504 5.62390 5.67757 5.73990 5.75859 5.81411 5.87202 6.01862 6.15785 6.53975 6.65640 6.83133 7.57408 8.60149 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.012314 B = 0.006429 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.314958 B = 4354.122638 C = 6021.524015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.097 4.097 3 C -0.116 4.116 4 C -0.134 4.134 5 C -0.070 4.070 6 C -0.169 4.169 7 C -0.078 4.078 8 C -0.203 4.203 9 C 0.191 3.809 10 N -0.672 5.672 11 C 0.105 3.895 12 C -0.122 4.122 13 C -0.147 4.147 14 C -0.103 4.103 15 C -0.212 4.212 16 C 0.083 3.917 17 O -0.243 6.243 18 C -0.391 4.391 19 H 0.082 0.918 20 C 0.011 3.989 21 N -0.923 5.923 22 Si 0.963 3.037 23 H -0.264 1.264 24 H -0.271 1.271 25 H -0.264 1.264 26 H 0.092 0.908 27 H 0.115 0.885 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.140 0.860 32 H 0.148 0.852 33 H 0.147 0.853 34 H 0.128 0.872 35 H 0.403 0.597 36 H 0.148 0.852 37 H 0.157 0.843 38 H 0.142 0.858 39 H 0.112 0.888 40 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.104 -8.133 -18.913 20.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.097 4.097 3 C -0.173 4.173 4 C -0.138 4.138 5 C -0.089 4.089 6 C -0.188 4.188 7 C -0.096 4.096 8 C -0.224 4.224 9 C 0.091 3.909 10 N -0.292 5.292 11 C 0.008 3.992 12 C -0.143 4.143 13 C -0.165 4.165 14 C -0.121 4.121 15 C -0.231 4.231 16 C 0.033 3.967 17 O -0.151 6.151 18 C -0.467 4.467 19 H 0.099 0.901 20 C -0.187 4.187 21 N -0.565 5.565 22 Si 0.786 3.214 23 H -0.189 1.189 24 H -0.196 1.196 25 H -0.189 1.189 26 H 0.111 0.889 27 H 0.134 0.866 28 H 0.109 0.891 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.158 0.842 32 H 0.166 0.834 33 H 0.164 0.836 34 H 0.146 0.854 35 H 0.238 0.762 36 H 0.165 0.835 37 H 0.175 0.825 38 H 0.160 0.840 39 H 0.130 0.870 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.173 -7.875 -18.851 20.430 hybrid contribution -0.078 1.228 0.772 1.452 sum 0.095 -6.648 -18.078 19.262 Atomic orbital electron populations 1.24250 0.94641 1.02314 1.00430 1.20525 0.94686 0.93400 1.01062 1.20875 0.99559 0.93656 1.03180 1.18668 1.05672 0.96751 0.92734 1.21223 0.95014 0.96294 0.96352 1.21214 1.02818 0.95475 0.99318 1.21271 0.96692 1.00033 0.91605 1.21174 1.02923 0.97731 1.00601 1.18142 0.92776 0.94693 0.85330 1.41907 1.62952 1.11818 1.12529 1.17198 1.06723 0.91463 0.83831 1.21004 1.02157 0.90288 1.00859 1.21066 1.03725 1.00560 0.91195 1.21114 0.99274 0.93631 0.98125 1.21204 1.08490 0.95028 0.98426 1.19358 0.99779 0.84417 0.93180 1.83446 1.82837 1.20938 1.27898 1.20657 1.48701 0.97211 0.80148 0.90055 1.25173 0.95881 0.98820 0.98809 1.69734 1.48739 1.20590 1.17405 0.85316 0.78949 0.78051 0.79093 1.18896 1.19570 1.18866 0.88917 0.86645 0.89089 0.91487 0.93256 0.84182 0.83408 0.83554 0.85394 0.76198 0.83495 0.82539 0.83973 0.86992 0.90716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.51 13.89 66.65 0.93 -3.58 16 2 C -0.10 -2.57 4.29 -18.53 -0.08 -2.65 16 3 C -0.12 -2.79 10.03 71.23 0.71 -2.07 16 4 C -0.13 -3.77 5.28 -20.00 -0.11 -3.88 16 5 C -0.07 -1.59 9.78 22.50 0.22 -1.37 16 6 C -0.17 -3.39 10.03 22.26 0.22 -3.17 16 7 C -0.08 -1.72 10.03 22.30 0.22 -1.49 16 8 C -0.20 -5.79 7.69 22.37 0.17 -5.61 16 9 C 0.19 6.16 6.33 38.55 0.24 6.40 16 10 N -0.67 -25.20 5.24 -179.47 -0.94 -26.15 16 11 C 0.10 4.14 6.11 38.32 0.23 4.37 16 12 C -0.12 -3.91 7.41 22.39 0.17 -3.75 16 13 C -0.15 -4.25 10.04 22.28 0.22 -4.02 16 14 C -0.10 -3.43 10.04 22.28 0.22 -3.20 16 15 C -0.21 -9.21 9.16 22.37 0.20 -9.00 16 16 C 0.08 3.90 6.67 22.70 0.15 4.05 16 17 O -0.24 -13.09 8.08 -22.82 -0.18 -13.28 16 18 C -0.39 -22.96 9.94 67.91 0.68 -22.28 16 19 H 0.08 5.00 5.44 -2.91 -0.02 4.99 16 20 C 0.01 0.66 5.49 84.82 0.47 1.12 16 21 N -0.92 -55.41 13.96 21.61 0.30 -55.11 16 22 Si 0.96 45.76 28.62 68.60 1.96 47.72 16 23 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 25 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 26 H 0.09 2.40 8.05 -2.91 -0.02 2.38 16 27 H 0.12 2.50 8.05 -2.91 -0.02 2.48 16 28 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 1.56 8.07 -2.39 -0.02 1.54 16 30 H 0.05 1.32 8.11 -2.39 -0.02 1.30 16 31 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 32 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 34 H 0.13 3.77 5.42 -2.91 -0.02 3.76 16 35 H 0.40 16.04 7.37 -92.71 -0.68 15.35 16 36 H 0.15 4.08 6.00 -2.91 -0.02 4.07 16 37 H 0.16 3.23 8.06 -2.91 -0.02 3.20 16 38 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 39 H 0.11 5.34 5.64 -2.91 -0.02 5.32 16 40 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -66.37 338.32 6.40 -59.96 By element: Atomic # 1 Polarization: 36.60 SS G_CDS: 0.38 Total: 36.98 kcal Atomic # 6 Polarization: -55.02 SS G_CDS: 4.88 Total: -50.14 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: -0.64 Total: -81.25 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.18 Total: -13.28 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.96 Total: 47.72 kcal Total: -66.37 6.40 -59.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212601864.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.011 kcal (2) G-P(sol) polarization free energy of solvation -66.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds