Wall clock time and date at job start Tue Mar 31 2020 06:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32656 * 1 3 3 C 1.50700 * 120.00026 * 2 1 4 4 C 1.47690 * 119.99966 * 180.02562 * 2 1 3 5 5 C 1.39489 * 120.18393 * 104.99458 * 4 2 1 6 6 C 1.37956 * 119.92987 * 179.97438 * 5 4 2 7 7 C 1.38453 * 120.30839 * 0.03278 * 6 5 4 8 8 C 1.38122 * 120.37528 * 359.97140 * 7 6 5 9 9 C 1.38791 * 120.06216 * 0.02562 * 8 7 6 10 10 N 1.39406 * 120.15395 * 180.02562 * 9 8 7 11 11 C 1.39780 * 119.99824 * 95.28046 * 10 9 8 12 12 C 1.38979 * 120.00422 * 354.64461 * 11 10 9 13 13 C 1.37995 * 119.98875 * 179.79629 * 12 11 10 14 14 C 1.38918 * 120.00783 * 0.48071 * 13 12 11 15 15 O 1.35783 * 119.99049 * 179.72691 * 14 13 12 16 16 C 1.34814 * 116.99384 * 174.75591 * 15 14 13 17 17 H 1.07994 * 120.00533 * 355.30576 * 16 15 14 18 18 C 1.38618 * 119.99472 * 175.30924 * 16 15 14 19 19 N 1.31587 * 119.99771 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 120.00176 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47215 * 90.00250 * 20 18 16 22 22 H 1.48503 * 109.47106 * 210.00461 * 20 18 16 23 23 H 1.48501 * 109.47260 * 330.00360 * 20 18 16 24 24 C 1.38912 * 120.01371 * 359.74675 * 14 13 12 25 25 C 1.37991 * 120.01080 * 0.02562 * 24 14 13 26 26 H 1.07994 * 119.99694 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.99508 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46775 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47168 * 300.00195 * 3 2 1 30 30 H 1.09003 * 109.46573 * 60.00076 * 3 2 1 31 31 H 1.07998 * 120.03462 * 0.25626 * 5 4 2 32 32 H 1.08005 * 119.84358 * 179.97438 * 6 5 4 33 33 H 1.08001 * 119.81439 * 179.97438 * 7 6 5 34 34 H 1.08002 * 119.96897 * 180.02562 * 8 7 6 35 35 H 0.96995 * 120.00270 * 275.27480 * 10 9 8 36 36 H 1.08002 * 120.00987 * 359.97438 * 12 11 10 37 37 H 1.07999 * 119.99453 * 180.23290 * 13 12 11 38 38 H 0.97003 * 120.00342 * 179.97438 * 19 18 16 39 39 H 1.08003 * 119.99613 * 180.02562 * 24 14 13 40 40 H 1.07999 * 120.00537 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3266 0.0000 0.0000 3 6 2.0801 1.3051 0.0000 4 6 2.0650 -1.2790 -0.0006 5 6 2.6858 -1.7299 -1.1655 6 6 3.3747 -2.9252 -1.1600 7 6 3.4527 -3.6813 -0.0028 8 6 2.8427 -3.2469 1.1578 9 6 2.1457 -2.0468 1.1697 10 7 1.5297 -1.6063 2.3402 11 6 2.1931 -0.7121 3.1852 12 6 3.5076 -0.3484 2.9179 13 6 4.1608 0.5378 3.7500 14 6 3.5080 1.0585 4.8602 15 8 4.1530 1.9261 5.6818 16 6 3.4307 2.4778 6.6774 17 1 2.3709 2.2828 6.7479 18 6 4.0485 3.2956 7.6107 19 7 3.3436 3.8338 8.5829 20 14 5.8818 3.6325 7.4892 21 1 6.1092 4.8370 6.6509 22 1 6.4337 3.8639 8.8483 23 1 6.5599 2.4646 6.8718 24 6 2.1957 0.6915 5.1302 25 6 1.5403 -0.1910 4.2960 26 1 -0.5399 0.9353 0.0004 27 1 -0.5399 -0.9354 -0.0004 28 1 3.1517 1.1059 -0.0005 29 1 1.8167 1.8767 -0.8900 30 1 1.8167 1.8766 0.8900 31 1 2.6312 -1.1417 -2.0696 32 1 3.8545 -3.2731 -2.0628 33 1 3.9937 -4.6160 -0.0076 34 1 2.9081 -3.8418 2.0569 35 1 0.6407 -1.9203 2.5682 36 1 4.0168 -0.7569 2.0576 37 1 5.1810 0.8234 3.5403 38 1 3.7760 4.4058 9.2362 39 1 1.6884 1.0968 5.9931 40 1 0.5202 -0.4766 4.5062 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212610218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:01 Heat of formation + Delta-G solvation = 50.133634 kcal Electronic energy + Delta-G solvation = -22642.038753 eV Core-core repulsion = 19387.909618 eV Total energy + Delta-G solvation = -3254.129135 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.01443 -38.86968 -36.96230 -35.22097 -34.32604 -32.22831 -30.50205 -30.22363 -29.46884 -27.22393 -27.11069 -24.96897 -23.01538 -22.57268 -21.89954 -20.60658 -19.03360 -17.86085 -17.39342 -16.83559 -16.48741 -15.77011 -15.42098 -14.74018 -14.36589 -14.08954 -13.89039 -13.71304 -13.65769 -13.59521 -13.08363 -12.72543 -12.50741 -12.38928 -12.18185 -12.13204 -11.93319 -11.70076 -11.60223 -11.37759 -10.99841 -10.80217 -10.62161 -10.11125 -9.38649 -9.31079 -9.17827 -8.89391 -8.64055 -8.55859 -8.25176 -6.58196 -6.31632 -3.96145 1.14318 1.25821 2.12280 2.17597 2.44808 3.28410 3.30875 3.46399 3.57957 3.76794 4.31900 4.57541 4.61670 4.87399 4.92008 5.03198 5.10795 5.18069 5.23903 5.44602 5.49830 5.57304 5.60312 5.68095 5.71653 5.77706 5.97933 6.07197 6.13249 6.16271 6.23622 6.35138 6.41468 6.46498 6.62820 6.73233 6.76704 6.78097 6.95397 7.01326 7.33452 7.49800 7.81465 7.97128 8.07065 8.17177 9.04886 9.70801 10.76886 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.023374 B = 0.003628 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.607636 B = 7716.087206 C = 7918.593994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.069 4.069 3 C -0.113 4.113 4 C -0.056 4.056 5 C -0.106 4.106 6 C -0.125 4.125 7 C -0.116 4.116 8 C -0.123 4.123 9 C 0.175 3.825 10 N -0.712 5.712 11 C 0.132 3.868 12 C -0.134 4.134 13 C -0.152 4.152 14 C 0.122 3.878 15 O -0.227 6.227 16 C -0.384 4.384 17 H 0.103 0.897 18 C 0.060 3.940 19 N -0.887 5.887 20 Si 0.905 3.095 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.260 1.260 24 C -0.179 4.179 25 C -0.136 4.136 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.400 0.600 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.277 0.723 39 H 0.134 0.866 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.942 -12.153 -18.695 22.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.070 4.070 3 C -0.170 4.170 4 C -0.058 4.058 5 C -0.124 4.124 6 C -0.143 4.143 7 C -0.135 4.135 8 C -0.143 4.143 9 C 0.082 3.918 10 N -0.345 5.345 11 C 0.036 3.964 12 C -0.156 4.156 13 C -0.172 4.172 14 C 0.071 3.929 15 O -0.133 6.133 16 C -0.460 4.460 17 H 0.120 0.880 18 C -0.142 4.142 19 N -0.526 5.526 20 Si 0.731 3.269 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.184 1.184 24 C -0.199 4.199 25 C -0.158 4.158 26 H 0.119 0.881 27 H 0.111 0.889 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.236 0.764 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.087 0.913 39 H 0.152 0.848 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.574 -11.917 -18.572 22.217 hybrid contribution 0.246 0.060 0.268 0.369 sum -2.328 -11.858 -18.304 21.933 Atomic orbital electron populations 1.23928 0.94605 1.01527 1.02209 1.20311 0.94321 0.92918 0.99408 1.20803 1.00174 0.93925 1.02109 1.19514 0.98391 0.94646 0.93223 1.21127 0.97586 0.96439 0.97262 1.21058 0.99800 0.95132 0.98282 1.21077 0.99780 0.99943 0.92692 1.21551 0.97481 0.96752 0.98498 1.17434 0.96003 0.92454 0.85951 1.41373 1.19492 1.51956 1.21639 1.17356 0.92055 0.94742 0.92240 1.20151 0.93248 1.01506 1.00711 1.19991 1.00206 1.01723 0.95251 1.18983 0.91358 0.91336 0.91263 1.83581 1.38549 1.52076 1.39089 1.20702 0.94093 1.27145 1.04053 0.87950 1.24424 0.99882 0.95763 0.94116 1.69665 1.36723 1.31995 1.14254 0.86189 0.83892 0.79595 0.77254 1.20033 1.21021 1.18447 1.21085 0.95491 1.01408 1.01902 1.20269 0.99137 1.00725 0.95684 0.88087 0.88854 0.91929 0.91771 0.90797 0.85988 0.86067 0.86049 0.85721 0.76368 0.87228 0.86621 0.91293 0.84848 0.87293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.08 14.06 28.84 0.41 -1.67 16 2 C -0.07 -0.84 4.87 -102.66 -0.50 -1.34 16 3 C -0.11 -1.37 10.06 36.01 0.36 -1.01 16 4 C -0.06 -0.68 5.21 -104.83 -0.55 -1.22 16 5 C -0.11 -1.10 9.78 -39.22 -0.38 -1.48 16 6 C -0.12 -1.17 10.03 -39.61 -0.40 -1.56 16 7 C -0.12 -1.13 10.03 -39.54 -0.40 -1.53 16 8 C -0.12 -1.41 9.96 -39.42 -0.39 -1.80 16 9 C 0.17 2.21 4.34 -83.47 -0.36 1.85 16 10 N -0.71 -9.56 4.80 -8.17 -0.04 -9.60 16 11 C 0.13 2.19 6.60 -83.68 -0.55 1.64 16 12 C -0.13 -2.37 9.31 -39.40 -0.37 -2.73 16 13 C -0.15 -3.06 9.98 -39.42 -0.39 -3.46 16 14 C 0.12 2.83 6.65 -39.08 -0.26 2.57 16 15 O -0.23 -6.07 8.58 -0.01 0.00 -6.07 16 16 C -0.38 -10.97 9.91 30.87 0.31 -10.66 16 17 H 0.10 2.98 5.50 -52.49 -0.29 2.69 16 18 C 0.06 1.71 5.49 -17.52 -0.10 1.62 16 19 N -0.89 -26.06 13.96 55.48 0.77 -25.29 16 20 Si 0.90 22.12 28.61 -169.99 -4.86 17.26 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.26 -6.40 7.11 56.52 0.40 -5.99 16 24 C -0.18 -3.86 9.13 -39.42 -0.36 -4.22 16 25 C -0.14 -2.44 9.89 -39.40 -0.39 -2.83 16 26 H 0.10 1.05 8.05 -52.49 -0.42 0.62 16 27 H 0.09 0.98 8.05 -52.49 -0.42 0.56 16 28 H 0.06 0.78 7.99 -51.93 -0.41 0.36 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.40 4.73 8.84 -40.82 -0.36 4.37 16 36 H 0.11 1.81 7.00 -52.49 -0.37 1.44 16 37 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 38 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.13 3.03 5.69 -52.48 -0.30 2.73 16 40 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 346.63 15.07 5.22 5.22 Total: -1.00 -30.14 346.63 -8.32 -38.46 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.09 Total: 7.85 kcal Atomic # 6 Polarization: -23.52 SS G_CDS: -4.32 Total: -27.84 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.74 Total: -34.89 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: 0.00 Total: -6.07 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.86 Total: 17.26 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.14 -8.32 -38.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212610218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.598 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds