Wall clock time and date at job start Tue Mar 31 2020 06:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32656 * 1 3 3 C 1.50700 * 120.00026 * 2 1 4 4 C 1.47690 * 119.99966 * 180.02562 * 2 1 3 5 5 C 1.39489 * 120.18393 * 104.99458 * 4 2 1 6 6 C 1.37956 * 119.92987 * 179.97438 * 5 4 2 7 7 C 1.38453 * 120.30839 * 0.03278 * 6 5 4 8 8 C 1.38122 * 120.37528 * 359.97140 * 7 6 5 9 9 C 1.38791 * 120.06216 * 0.02562 * 8 7 6 10 10 N 1.39406 * 120.15395 * 180.02562 * 9 8 7 11 11 C 1.39780 * 119.99824 * 95.28046 * 10 9 8 12 12 C 1.38979 * 120.00422 * 354.64461 * 11 10 9 13 13 C 1.37995 * 119.98875 * 179.79629 * 12 11 10 14 14 C 1.38918 * 120.00783 * 0.48071 * 13 12 11 15 15 O 1.35783 * 119.99049 * 179.72691 * 14 13 12 16 16 C 1.34814 * 116.99384 * 174.75591 * 15 14 13 17 17 H 1.07994 * 120.00533 * 355.30576 * 16 15 14 18 18 C 1.38618 * 119.99472 * 175.30924 * 16 15 14 19 19 N 1.31587 * 119.99771 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 120.00176 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.47215 * 90.00250 * 20 18 16 22 22 H 1.48503 * 109.47106 * 210.00461 * 20 18 16 23 23 H 1.48501 * 109.47260 * 330.00360 * 20 18 16 24 24 C 1.38912 * 120.01371 * 359.74675 * 14 13 12 25 25 C 1.37991 * 120.01080 * 0.02562 * 24 14 13 26 26 H 1.07994 * 119.99694 * 359.97438 * 1 2 3 27 27 H 1.08002 * 119.99508 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46775 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47168 * 300.00195 * 3 2 1 30 30 H 1.09003 * 109.46573 * 60.00076 * 3 2 1 31 31 H 1.07998 * 120.03462 * 0.25626 * 5 4 2 32 32 H 1.08005 * 119.84358 * 179.97438 * 6 5 4 33 33 H 1.08001 * 119.81439 * 179.97438 * 7 6 5 34 34 H 1.08002 * 119.96897 * 180.02562 * 8 7 6 35 35 H 0.96995 * 120.00270 * 275.27480 * 10 9 8 36 36 H 1.08002 * 120.00987 * 359.97438 * 12 11 10 37 37 H 1.07999 * 119.99453 * 180.23290 * 13 12 11 38 38 H 0.97003 * 120.00342 * 179.97438 * 19 18 16 39 39 H 1.08003 * 119.99613 * 180.02562 * 24 14 13 40 40 H 1.07999 * 120.00537 * 179.97438 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3266 0.0000 0.0000 3 6 2.0801 1.3051 0.0000 4 6 2.0650 -1.2790 -0.0006 5 6 2.6858 -1.7299 -1.1655 6 6 3.3747 -2.9252 -1.1600 7 6 3.4527 -3.6813 -0.0028 8 6 2.8427 -3.2469 1.1578 9 6 2.1457 -2.0468 1.1697 10 7 1.5297 -1.6063 2.3402 11 6 2.1931 -0.7121 3.1852 12 6 3.5076 -0.3484 2.9179 13 6 4.1608 0.5378 3.7500 14 6 3.5080 1.0585 4.8602 15 8 4.1530 1.9261 5.6818 16 6 3.4307 2.4778 6.6774 17 1 2.3709 2.2828 6.7479 18 6 4.0485 3.2956 7.6107 19 7 3.3436 3.8338 8.5829 20 14 5.8818 3.6325 7.4892 21 1 6.1092 4.8370 6.6509 22 1 6.4337 3.8639 8.8483 23 1 6.5599 2.4646 6.8718 24 6 2.1957 0.6915 5.1302 25 6 1.5403 -0.1910 4.2960 26 1 -0.5399 0.9353 0.0004 27 1 -0.5399 -0.9354 -0.0004 28 1 3.1517 1.1059 -0.0005 29 1 1.8167 1.8767 -0.8900 30 1 1.8167 1.8766 0.8900 31 1 2.6312 -1.1417 -2.0696 32 1 3.8545 -3.2731 -2.0628 33 1 3.9937 -4.6160 -0.0076 34 1 2.9081 -3.8418 2.0569 35 1 0.6407 -1.9203 2.5682 36 1 4.0168 -0.7569 2.0576 37 1 5.1810 0.8234 3.5403 38 1 3.7760 4.4058 9.2362 39 1 1.6884 1.0968 5.9931 40 1 0.5202 -0.4766 4.5062 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212610218.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:00 Heat of formation + Delta-G solvation = 35.029045 kcal Electronic energy + Delta-G solvation = -22642.693738 eV Core-core repulsion = 19387.909618 eV Total energy + Delta-G solvation = -3254.784119 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.17517 -40.34957 -38.49492 -36.10642 -35.63489 -34.30073 -31.92874 -31.22009 -30.61686 -28.64929 -28.05570 -26.86570 -24.01089 -23.81126 -23.20470 -22.04079 -20.02577 -19.63300 -19.09664 -18.05849 -17.84886 -16.75105 -16.36498 -16.30313 -15.64663 -15.54161 -15.48691 -15.19931 -14.82407 -14.64809 -14.35849 -14.13298 -14.02439 -13.91585 -13.55710 -13.32753 -13.20454 -12.99322 -12.73759 -12.54361 -12.47511 -12.25291 -11.94434 -11.84779 -11.24617 -11.03320 -10.43735 -10.05700 -9.82858 -9.72748 -9.46606 -8.43719 -8.09814 -6.11818 0.30235 0.43123 0.54699 0.84496 1.28466 1.33403 1.38187 1.54276 2.32523 2.55102 2.83072 2.83621 3.17910 3.25305 3.75628 4.07186 4.08041 4.13531 4.21496 4.25086 4.48206 4.53931 4.57647 4.63825 4.64170 4.74361 4.79601 4.87976 4.96052 5.10097 5.14844 5.20188 5.25489 5.42597 5.46462 5.56103 5.62094 5.62692 5.76127 5.80285 5.84164 5.86813 6.00431 6.16367 6.66930 6.91970 6.95263 7.71538 8.68597 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.023374 B = 0.003628 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.607636 B = 7716.087206 C = 7918.593994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.085 4.085 3 C -0.111 4.111 4 C -0.066 4.066 5 C -0.110 4.110 6 C -0.117 4.117 7 C -0.115 4.115 8 C -0.130 4.130 9 C 0.147 3.853 10 N -0.697 5.697 11 C 0.166 3.834 12 C -0.132 4.132 13 C -0.144 4.144 14 C 0.075 3.925 15 O -0.253 6.253 16 C -0.390 4.390 17 H 0.079 0.921 18 C 0.006 3.994 19 N -0.930 5.930 20 Si 0.970 3.030 21 H -0.266 1.266 22 H -0.270 1.270 23 H -0.264 1.264 24 C -0.186 4.186 25 C -0.141 4.141 26 H 0.106 0.894 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.137 0.863 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.127 0.873 35 H 0.410 0.590 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.282 0.718 39 H 0.110 0.890 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.204 -14.322 -21.773 26.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.085 4.085 3 C -0.168 4.168 4 C -0.068 4.068 5 C -0.129 4.129 6 C -0.135 4.135 7 C -0.133 4.133 8 C -0.150 4.150 9 C 0.054 3.946 10 N -0.329 5.329 11 C 0.067 3.933 12 C -0.154 4.154 13 C -0.163 4.163 14 C 0.026 3.974 15 O -0.162 6.162 16 C -0.467 4.467 17 H 0.096 0.904 18 C -0.191 4.191 19 N -0.572 5.572 20 Si 0.792 3.208 21 H -0.191 1.191 22 H -0.194 1.194 23 H -0.189 1.189 24 C -0.206 4.206 25 C -0.163 4.163 26 H 0.124 0.876 27 H 0.118 0.882 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.155 0.845 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.145 0.855 35 H 0.248 0.752 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.092 0.908 39 H 0.128 0.872 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.873 -14.140 -21.707 25.974 hybrid contribution -0.154 0.455 0.884 1.006 sum -2.027 -13.685 -20.824 25.000 Atomic orbital electron populations 1.24070 0.94468 1.02141 1.01110 1.20396 0.94689 0.92981 1.00437 1.20766 0.99848 0.94187 1.01966 1.19568 0.98984 0.94545 0.93695 1.21386 0.97203 0.97057 0.97228 1.21434 0.98572 0.94265 0.99218 1.21395 0.99073 1.00796 0.92066 1.21641 0.97570 0.96312 0.99463 1.17590 0.97828 0.93612 0.85563 1.41338 1.19688 1.50429 1.21396 1.17423 0.91588 0.93055 0.91251 1.20295 0.93593 1.00798 1.00688 1.20198 1.00674 1.01264 0.94191 1.19418 0.92550 0.92933 0.92478 1.83508 1.38785 1.54160 1.39719 1.20664 0.93519 1.27648 1.04884 0.90398 1.25229 1.04390 0.95686 0.93820 1.69751 1.38553 1.33453 1.15434 0.85223 0.78387 0.79278 0.77866 1.19142 1.19449 1.18864 1.21044 0.95257 1.02324 1.01988 1.20430 1.00292 1.00052 0.95544 0.87607 0.88156 0.92475 0.90002 0.92939 0.84526 0.83210 0.83579 0.85531 0.75245 0.85279 0.85666 0.90834 0.87205 0.84635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.67 14.06 66.65 0.94 -2.73 16 2 C -0.08 -1.88 4.87 -18.53 -0.09 -1.97 16 3 C -0.11 -2.53 10.06 71.24 0.72 -1.81 16 4 C -0.07 -1.42 5.21 -20.00 -0.10 -1.52 16 5 C -0.11 -1.91 9.78 22.50 0.22 -1.69 16 6 C -0.12 -1.68 10.03 22.25 0.22 -1.46 16 7 C -0.11 -1.76 10.03 22.29 0.22 -1.54 16 8 C -0.13 -2.55 9.96 22.37 0.22 -2.33 16 9 C 0.15 3.29 4.34 38.55 0.17 3.46 16 10 N -0.70 -16.98 4.80 -179.75 -0.86 -17.85 16 11 C 0.17 5.21 6.60 38.23 0.25 5.46 16 12 C -0.13 -4.42 9.31 22.39 0.21 -4.21 16 13 C -0.14 -5.75 9.98 22.37 0.22 -5.52 16 14 C 0.07 3.59 6.65 22.59 0.15 3.74 16 15 O -0.25 -14.11 8.58 -22.95 -0.20 -14.31 16 16 C -0.39 -23.52 9.91 67.91 0.67 -22.85 16 17 H 0.08 4.90 5.50 -2.91 -0.02 4.89 16 18 C 0.01 0.35 5.49 84.82 0.47 0.81 16 19 N -0.93 -56.77 13.96 21.61 0.30 -56.47 16 20 Si 0.97 46.70 28.61 68.60 1.96 48.66 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.26 -12.73 7.11 99.48 0.71 -12.03 16 24 C -0.19 -8.33 9.13 22.37 0.20 -8.13 16 25 C -0.14 -4.98 9.89 22.39 0.22 -4.76 16 26 H 0.11 2.00 8.05 -2.91 -0.02 1.98 16 27 H 0.10 1.87 8.05 -2.91 -0.02 1.85 16 28 H 0.06 1.34 7.99 -2.39 -0.02 1.32 16 29 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.39 16 31 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 33 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 34 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 35 H 0.41 8.58 8.84 -92.71 -0.82 7.76 16 36 H 0.13 3.90 7.00 -2.91 -0.02 3.87 16 37 H 0.13 4.69 8.06 -2.91 -0.02 4.66 16 38 H 0.28 15.84 8.31 -92.71 -0.77 15.06 16 39 H 0.11 5.39 5.69 -2.91 -0.02 5.37 16 40 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -67.78 346.63 6.35 -61.43 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.23 Total: 25.58 kcal Atomic # 6 Polarization: -51.96 SS G_CDS: 4.91 Total: -47.04 kcal Atomic # 7 Polarization: -73.76 SS G_CDS: -0.56 Total: -74.32 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.20 Total: -14.31 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.96 Total: 48.66 kcal Total: -67.78 6.35 -61.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212610218.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.460 kcal (2) G-P(sol) polarization free energy of solvation -67.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds