Wall clock time and date at job start Tue Mar 31 2020 06:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30866 * 125.89625 * 2 1 4 4 C 1.33629 * 109.77427 * 180.13945 * 3 2 1 5 5 N 1.39891 * 125.59878 * 179.82106 * 4 3 2 6 6 C 1.34773 * 120.00338 * 359.69713 * 5 4 3 7 7 O 1.21593 * 119.99894 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00097 * 179.72675 * 6 5 4 9 9 C 1.47422 * 125.64727 * 359.95968 * 8 6 5 10 10 C 1.55132 * 104.72087 * 155.82223 * 9 8 6 11 11 C 1.55159 * 101.48684 * 37.29365 * 10 9 8 12 12 O 1.42898 * 110.71574 * 82.69504 * 11 10 9 13 13 C 1.50693 * 110.87327 * 205.89810 * 11 10 9 14 14 H 1.08001 * 120.00264 * 355.07023 * 13 11 10 15 15 C 1.37879 * 119.99896 * 175.06760 * 13 11 10 16 16 N 1.31510 * 120.00084 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 119.99875 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47114 * 89.99993 * 17 15 13 19 19 H 1.48499 * 109.47129 * 209.99712 * 17 15 13 20 20 H 1.48500 * 109.47377 * 329.99878 * 17 15 13 21 21 C 1.47020 * 125.64482 * 180.27711 * 8 6 5 22 22 N 1.31160 * 108.79678 * 359.55649 * 4 3 2 23 23 N 1.34366 * 125.90249 * 179.65105 * 2 1 3 24 24 C 1.46503 * 126.76635 * 0.05570 * 23 2 1 25 25 H 1.08997 * 109.47196 * 270.34649 * 1 2 3 26 26 H 1.08998 * 109.47335 * 30.35334 * 1 2 3 27 27 H 1.09004 * 109.46813 * 150.35016 * 1 2 3 28 28 H 0.97000 * 119.99550 * 179.69209 * 5 4 3 29 29 H 1.09001 * 110.36735 * 274.75174 * 9 8 6 30 30 H 1.09000 * 110.36516 * 37.07534 * 9 8 6 31 31 H 1.09005 * 111.19240 * 279.19288 * 10 9 8 32 32 H 1.09000 * 110.90764 * 155.27586 * 10 9 8 33 33 H 0.96699 * 114.00148 * 185.02021 * 12 11 10 34 34 H 0.97000 * 120.00162 * 179.97438 * 16 15 13 35 35 H 1.08999 * 109.88065 * 300.42988 * 21 8 6 36 36 H 1.08999 * 109.89017 * 61.44713 * 21 8 6 37 37 H 1.09001 * 109.46962 * 270.00299 * 24 23 2 38 38 H 1.09000 * 109.47161 * 29.99858 * 24 23 2 39 39 H 1.08998 * 109.47132 * 150.00109 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0601 0.0000 4 6 3.5580 0.6891 -0.0031 5 7 4.6561 1.5557 -0.0075 6 6 4.4621 2.8893 -0.0153 7 8 3.3326 3.3394 -0.0188 8 7 5.5202 3.7243 -0.0140 9 6 6.9367 3.3161 -0.0038 10 6 7.6979 4.5188 -0.6208 11 6 6.9035 5.7182 -0.0398 12 8 7.3507 6.0281 1.2816 13 6 7.0195 6.9239 -0.9363 14 1 7.6643 6.8930 -1.8021 15 6 6.3023 8.0665 -0.6513 16 7 5.5166 8.1039 0.4027 17 14 6.4455 9.5607 -1.7630 18 1 5.4188 9.4818 -2.8330 19 1 6.2338 10.7943 -0.9639 20 1 7.7977 9.5940 -2.3760 21 6 5.4526 5.1929 -0.0160 22 7 3.6193 -0.6211 0.0046 23 7 2.2949 -1.0884 0.0066 24 6 1.8585 -2.4869 0.0140 25 1 -0.3633 0.0062 1.0276 26 1 -0.3634 0.8868 -0.5193 27 1 -0.3633 -0.8932 -0.5084 28 1 5.5573 1.1966 -0.0050 29 1 7.2721 3.1354 1.0175 30 1 7.0789 2.4242 -0.6141 31 1 7.6423 4.5039 -1.7093 32 1 8.7346 4.5370 -0.2844 33 1 6.8355 6.7198 1.7191 34 1 5.0124 8.9078 0.6034 35 1 4.9189 5.5382 -0.9014 36 1 4.9442 5.5420 0.8828 37 1 1.7494 -2.8280 1.0435 38 1 0.9011 -2.5714 -0.5001 39 1 2.6002 -3.1016 -0.4958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001218781673.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:23 Heat of formation + Delta-G solvation = 36.492335 kcal Electronic energy + Delta-G solvation = -23910.990965 eV Core-core repulsion = 20277.713787 eV Total energy + Delta-G solvation = -3633.277178 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.09571 -39.68091 -37.47200 -35.02558 -34.28328 -33.17931 -32.25770 -32.20515 -29.94949 -28.58702 -27.82610 -26.62284 -25.04664 -22.99473 -21.49654 -21.06962 -19.63831 -19.24578 -17.68428 -17.14458 -17.03611 -16.36591 -15.92195 -15.32508 -14.98574 -14.53640 -14.32994 -13.91742 -13.74276 -13.63042 -13.43471 -12.98912 -12.85280 -12.81862 -12.64243 -12.20163 -11.68578 -11.62743 -11.47326 -11.02670 -10.81718 -10.66450 -10.62806 -10.47537 -10.14798 -9.98577 -9.63531 -9.38651 -9.30259 -8.66004 -8.53502 -8.30965 -7.80352 -6.25836 -4.34463 1.57309 2.00762 2.85768 2.94094 3.24170 3.31482 3.34030 3.87474 3.96664 4.28391 4.33681 4.44168 4.75615 4.87171 5.01718 5.10673 5.24245 5.34148 5.37074 5.53867 5.63815 5.68266 5.78727 6.00319 6.08190 6.32240 6.50893 6.65451 6.72189 6.86789 6.89884 6.98199 7.15467 7.30937 7.48488 7.75530 8.03930 8.16417 8.49350 8.69021 9.04342 9.31403 9.40254 10.82035 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.028873 B = 0.003457 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.515825 B = 8097.081785 C = 8679.562805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.285 3.715 3 N -0.510 5.510 4 C 0.480 3.520 5 N -0.641 5.641 6 C 0.713 3.287 7 O -0.538 6.538 8 N -0.624 5.624 9 C 0.097 3.903 10 C -0.115 4.115 11 C 0.248 3.752 12 O -0.585 6.585 13 C -0.538 4.538 14 H 0.067 0.933 15 C 0.071 3.929 16 N -0.893 5.893 17 Si 0.904 3.096 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.124 3.876 22 N -0.356 5.356 23 N -0.386 5.386 24 C 0.102 3.898 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.415 0.585 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.383 0.617 34 H 0.270 0.730 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.370 -18.820 -0.481 19.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.008 3.992 3 N -0.242 5.242 4 C 0.109 3.891 5 N -0.298 5.298 6 C 0.414 3.586 7 O -0.409 6.409 8 N -0.362 5.362 9 C -0.026 4.026 10 C -0.153 4.153 11 C 0.208 3.792 12 O -0.393 6.393 13 C -0.576 4.576 14 H 0.085 0.915 15 C -0.133 4.133 16 N -0.531 5.531 17 Si 0.731 3.269 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.197 1.197 21 C 0.002 3.998 22 N -0.193 5.193 23 N -0.179 5.179 24 C -0.041 4.041 25 H 0.109 0.891 26 H 0.118 0.882 27 H 0.099 0.901 28 H 0.252 0.748 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.233 0.767 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.108 0.892 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.404 -18.880 -0.509 19.943 hybrid contribution -0.062 0.813 -0.399 0.908 sum -6.465 -18.066 -0.908 19.210 Atomic orbital electron populations 1.20369 0.83743 1.04764 1.04444 1.24493 0.96842 0.81845 0.96054 1.70676 0.99815 1.27670 1.26001 1.19924 0.87075 0.86111 0.95940 1.41813 1.06127 1.04153 1.77701 1.15378 0.84822 0.79263 0.79177 1.91027 1.20696 1.74350 1.54871 1.47988 1.04074 1.08436 1.75719 1.22387 0.81759 0.98048 1.00374 1.22760 0.99125 0.93492 0.99888 1.19510 0.86583 0.91201 0.81924 1.86106 1.61446 1.61365 1.30416 1.21473 1.27470 0.97351 1.11292 0.91502 1.25075 0.93917 0.99039 0.95250 1.69693 1.27606 1.29447 1.26375 0.86396 0.78602 0.81519 0.80355 1.20409 1.21009 1.19722 1.22961 1.01467 0.73171 1.02173 1.78134 0.96865 1.08822 1.35486 1.49948 1.03119 1.07462 1.57414 1.21855 1.01148 0.77569 1.03507 0.89056 0.88226 0.90099 0.74758 0.91602 0.92474 0.90348 0.90455 0.76716 0.91963 0.91476 0.91596 0.90518 0.89167 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 10.20 36.00 0.37 -0.22 16 2 C 0.28 3.87 7.98 -155.72 -1.24 2.62 16 3 N -0.51 -9.65 9.37 -11.07 -0.10 -9.75 16 4 C 0.48 8.83 8.81 -320.83 -2.83 6.01 16 5 N -0.64 -11.58 5.40 -17.22 -0.09 -11.67 16 6 C 0.71 15.56 8.46 -86.92 -0.73 14.83 16 7 O -0.54 -13.82 15.34 5.28 0.08 -13.74 16 8 N -0.62 -13.27 3.32 -176.10 -0.59 -13.85 16 9 C 0.10 1.71 6.58 -2.41 -0.02 1.69 16 10 C -0.11 -2.26 6.24 -24.46 -0.15 -2.41 16 11 C 0.25 5.99 0.85 -89.94 -0.08 5.91 16 12 O -0.58 -14.60 13.07 -35.23 -0.46 -15.06 16 13 C -0.54 -14.04 8.13 -34.44 -0.28 -14.32 16 14 H 0.07 1.71 7.78 -52.49 -0.41 1.31 16 15 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 16 N -0.89 -23.91 10.96 55.43 0.61 -23.30 16 17 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 C 0.12 3.04 5.23 -3.06 -0.02 3.03 16 22 N -0.36 -5.67 12.72 30.04 0.38 -5.29 16 23 N -0.39 -4.79 4.03 -65.10 -0.26 -5.05 16 24 C 0.10 0.63 11.32 59.85 0.68 1.31 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.08 0.35 7.11 -51.93 -0.37 -0.02 16 28 H 0.42 6.13 7.30 -40.82 -0.30 5.83 16 29 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 30 H 0.06 0.80 7.29 -51.93 -0.38 0.42 16 31 H 0.08 1.49 8.05 -51.93 -0.42 1.07 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.38 9.81 7.45 45.56 0.34 10.15 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.07 1.80 7.81 -51.93 -0.41 1.40 16 36 H 0.07 1.77 7.92 -51.93 -0.41 1.36 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.28 7.09 -51.93 -0.37 -0.09 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 329.12 15.07 4.96 4.96 Total: -1.00 -35.05 329.12 -9.28 -44.33 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -4.39 Total: 12.67 kcal Atomic # 6 Polarization: 24.60 SS G_CDS: -4.39 Total: 20.21 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -0.05 Total: -68.91 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.38 Total: -28.80 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.05 -9.28 -44.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218781673.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.824 kcal (2) G-P(sol) polarization free energy of solvation -35.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds