Wall clock time and date at job start Tue Mar 31 2020 06:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30866 * 125.89625 * 2 1 4 4 C 1.33629 * 109.77427 * 180.13945 * 3 2 1 5 5 N 1.39891 * 125.59878 * 179.82106 * 4 3 2 6 6 C 1.34773 * 120.00338 * 359.69713 * 5 4 3 7 7 O 1.21593 * 119.99894 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00097 * 179.72675 * 6 5 4 9 9 C 1.47422 * 125.64727 * 359.95968 * 8 6 5 10 10 C 1.55132 * 104.72087 * 155.82223 * 9 8 6 11 11 C 1.55159 * 101.48684 * 37.29365 * 10 9 8 12 12 O 1.42898 * 110.71574 * 82.69504 * 11 10 9 13 13 C 1.50693 * 110.87327 * 205.89810 * 11 10 9 14 14 H 1.08001 * 120.00264 * 355.07023 * 13 11 10 15 15 C 1.37879 * 119.99896 * 175.06760 * 13 11 10 16 16 N 1.31510 * 120.00084 * 359.97438 * 15 13 11 17 17 Si 1.86796 * 119.99875 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47114 * 89.99993 * 17 15 13 19 19 H 1.48499 * 109.47129 * 209.99712 * 17 15 13 20 20 H 1.48500 * 109.47377 * 329.99878 * 17 15 13 21 21 C 1.47020 * 125.64482 * 180.27711 * 8 6 5 22 22 N 1.31160 * 108.79678 * 359.55649 * 4 3 2 23 23 N 1.34366 * 125.90249 * 179.65105 * 2 1 3 24 24 C 1.46503 * 126.76635 * 0.05570 * 23 2 1 25 25 H 1.08997 * 109.47196 * 270.34649 * 1 2 3 26 26 H 1.08998 * 109.47335 * 30.35334 * 1 2 3 27 27 H 1.09004 * 109.46813 * 150.35016 * 1 2 3 28 28 H 0.97000 * 119.99550 * 179.69209 * 5 4 3 29 29 H 1.09001 * 110.36735 * 274.75174 * 9 8 6 30 30 H 1.09000 * 110.36516 * 37.07534 * 9 8 6 31 31 H 1.09005 * 111.19240 * 279.19288 * 10 9 8 32 32 H 1.09000 * 110.90764 * 155.27586 * 10 9 8 33 33 H 0.96699 * 114.00148 * 185.02021 * 12 11 10 34 34 H 0.97000 * 120.00162 * 179.97438 * 16 15 13 35 35 H 1.08999 * 109.88065 * 300.42988 * 21 8 6 36 36 H 1.08999 * 109.89017 * 61.44713 * 21 8 6 37 37 H 1.09001 * 109.46962 * 270.00299 * 24 23 2 38 38 H 1.09000 * 109.47161 * 29.99858 * 24 23 2 39 39 H 1.08998 * 109.47132 * 150.00109 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0601 0.0000 4 6 3.5580 0.6891 -0.0031 5 7 4.6561 1.5557 -0.0075 6 6 4.4621 2.8893 -0.0153 7 8 3.3326 3.3394 -0.0188 8 7 5.5202 3.7243 -0.0140 9 6 6.9367 3.3161 -0.0038 10 6 7.6979 4.5188 -0.6208 11 6 6.9035 5.7182 -0.0398 12 8 7.3507 6.0281 1.2816 13 6 7.0195 6.9239 -0.9363 14 1 7.6643 6.8930 -1.8021 15 6 6.3023 8.0665 -0.6513 16 7 5.5166 8.1039 0.4027 17 14 6.4455 9.5607 -1.7630 18 1 5.4188 9.4818 -2.8330 19 1 6.2338 10.7943 -0.9639 20 1 7.7977 9.5940 -2.3760 21 6 5.4526 5.1929 -0.0160 22 7 3.6193 -0.6211 0.0046 23 7 2.2949 -1.0884 0.0066 24 6 1.8585 -2.4869 0.0140 25 1 -0.3633 0.0062 1.0276 26 1 -0.3634 0.8868 -0.5193 27 1 -0.3633 -0.8932 -0.5084 28 1 5.5573 1.1966 -0.0050 29 1 7.2721 3.1354 1.0175 30 1 7.0789 2.4242 -0.6141 31 1 7.6423 4.5039 -1.7093 32 1 8.7346 4.5370 -0.2844 33 1 6.8355 6.7198 1.7191 34 1 5.0124 8.9078 0.6034 35 1 4.9189 5.5382 -0.9014 36 1 4.9442 5.5420 0.8828 37 1 1.7494 -2.8280 1.0435 38 1 0.9011 -2.5714 -0.5001 39 1 2.6002 -3.1016 -0.4958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218781673.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:23 Heat of formation + Delta-G solvation = 11.207498 kcal Electronic energy + Delta-G solvation = -23912.087398 eV Core-core repulsion = 20277.713787 eV Total energy + Delta-G solvation = -3634.373611 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.22494 -41.33710 -39.22343 -36.38268 -36.11618 -34.29596 -34.22065 -33.31075 -31.63196 -29.61520 -29.43705 -27.70612 -26.74235 -24.60475 -22.83663 -22.22572 -21.44389 -20.65942 -19.29077 -18.88942 -18.45142 -17.51804 -17.24775 -16.82647 -16.68594 -16.22145 -16.08066 -15.12342 -14.94629 -14.77704 -14.72903 -14.28715 -14.21235 -14.00228 -13.73822 -13.50770 -13.31906 -13.13652 -12.84468 -12.61810 -12.52003 -12.34649 -12.27679 -12.10372 -11.84256 -11.53488 -11.17031 -10.81447 -10.76214 -10.64938 -10.29706 -9.88074 -9.44434 -8.25152 -6.40960 0.48064 0.83910 1.42697 1.44575 1.54276 1.61128 1.69821 2.31559 2.38803 2.64934 3.01667 3.29678 3.63537 3.77591 4.00022 4.11843 4.19643 4.35099 4.43395 4.48144 4.57293 4.64670 4.68359 4.70373 4.75383 5.03580 5.04306 5.11718 5.16792 5.23409 5.34150 5.47244 5.54216 5.74203 5.77321 5.95696 6.07903 6.63578 6.71587 7.18103 7.28290 7.35929 7.41418 8.81095 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.028873 B = 0.003457 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.515825 B = 8097.081785 C = 8679.562805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.285 3.715 3 N -0.574 5.574 4 C 0.450 3.550 5 N -0.627 5.627 6 C 0.714 3.286 7 O -0.586 6.586 8 N -0.626 5.626 9 C 0.100 3.900 10 C -0.108 4.108 11 C 0.234 3.766 12 O -0.586 6.586 13 C -0.556 4.556 14 H 0.069 0.931 15 C 0.025 3.975 16 N -0.915 5.915 17 Si 0.964 3.036 18 H -0.280 1.280 19 H -0.282 1.282 20 H -0.264 1.264 21 C 0.143 3.857 22 N -0.360 5.360 23 N -0.376 5.376 24 C 0.087 3.913 25 H 0.109 0.891 26 H 0.088 0.912 27 H 0.125 0.875 28 H 0.430 0.570 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.375 0.625 34 H 0.270 0.730 35 H 0.033 0.967 36 H 0.031 0.969 37 H 0.096 0.904 38 H 0.129 0.871 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.404 -21.423 -1.161 22.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.009 3.991 3 N -0.307 5.307 4 C 0.080 3.920 5 N -0.285 5.285 6 C 0.415 3.585 7 O -0.461 6.461 8 N -0.364 5.364 9 C -0.021 4.021 10 C -0.146 4.146 11 C 0.194 3.806 12 O -0.393 6.393 13 C -0.595 4.595 14 H 0.087 0.913 15 C -0.176 4.176 16 N -0.554 5.554 17 Si 0.789 3.211 18 H -0.206 1.206 19 H -0.207 1.207 20 H -0.188 1.188 21 C 0.020 3.980 22 N -0.198 5.198 23 N -0.169 5.169 24 C -0.052 4.052 25 H 0.127 0.873 26 H 0.107 0.893 27 H 0.143 0.857 28 H 0.270 0.730 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.225 0.775 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.114 0.886 38 H 0.147 0.853 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.405 -21.591 -1.191 22.553 hybrid contribution -0.147 1.452 -0.170 1.470 sum -6.553 -20.139 -1.361 21.222 Atomic orbital electron populations 1.20649 0.79903 1.06422 1.06013 1.25317 0.98574 0.81056 0.94190 1.70584 1.00712 1.31020 1.28412 1.20099 0.87127 0.86770 0.98021 1.41369 1.07185 1.02761 1.77136 1.15456 0.84090 0.80334 0.78665 1.90982 1.22620 1.75607 1.56849 1.47889 1.05738 1.07103 1.75667 1.22592 0.78903 0.98784 1.01857 1.22759 0.99640 0.91952 1.00257 1.19712 0.87047 0.92435 0.81414 1.86096 1.61289 1.61055 1.30908 1.21818 1.27521 0.98368 1.11755 0.91291 1.25828 0.93648 1.01668 0.96460 1.69806 1.28100 1.29922 1.27592 0.85464 0.78683 0.78392 0.78552 1.20576 1.20743 1.18832 1.22464 1.01305 0.75486 0.98745 1.78006 0.99501 1.07512 1.34761 1.50340 1.01635 1.09423 1.55473 1.22439 1.03067 0.74180 1.05529 0.87291 0.89286 0.85689 0.73021 0.90507 0.88010 0.89595 0.88746 0.77549 0.92088 0.94874 0.95055 0.88582 0.85279 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.20 71.24 0.73 -0.21 16 2 C 0.28 7.34 7.98 138.24 1.10 8.44 16 3 N -0.57 -21.98 9.37 -188.93 -1.77 -23.75 16 4 C 0.45 16.59 8.81 260.80 2.30 18.89 16 5 N -0.63 -22.63 5.40 -326.66 -1.76 -24.40 16 6 C 0.71 31.94 8.46 179.06 1.51 33.46 16 7 O -0.59 -31.56 15.34 -4.01 -0.06 -31.62 16 8 N -0.63 -26.99 3.32 -829.31 -2.76 -29.74 16 9 C 0.10 3.34 6.58 86.93 0.57 3.91 16 10 C -0.11 -4.11 6.24 32.07 0.20 -3.91 16 11 C 0.23 11.44 0.85 -10.35 -0.01 11.43 16 12 O -0.59 -29.70 13.07 -148.98 -1.95 -31.65 16 13 C -0.56 -29.39 8.13 25.60 0.21 -29.18 16 14 H 0.07 3.53 7.78 -2.91 -0.02 3.50 16 15 C 0.02 1.33 5.28 84.66 0.45 1.77 16 16 N -0.92 -50.64 10.96 21.45 0.24 -50.40 16 17 Si 0.96 42.62 29.54 68.60 2.03 44.65 16 18 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 21 C 0.14 7.35 5.23 86.73 0.45 7.81 16 22 N -0.36 -11.05 12.72 -58.88 -0.75 -11.80 16 23 N -0.38 -8.46 4.03 -359.89 -1.45 -9.91 16 24 C 0.09 0.74 11.32 127.77 1.45 2.19 16 25 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.12 0.50 7.11 -2.38 -0.02 0.48 16 28 H 0.43 12.18 7.30 -92.71 -0.68 11.50 16 29 H 0.08 2.43 8.14 -2.39 -0.02 2.42 16 30 H 0.10 2.52 7.29 -2.39 -0.02 2.50 16 31 H 0.09 3.12 8.05 -2.38 -0.02 3.10 16 32 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 33 H 0.38 19.95 7.45 -74.06 -0.55 19.40 16 34 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 35 H 0.03 1.88 7.81 -2.39 -0.02 1.86 16 36 H 0.03 1.78 7.92 -2.39 -0.02 1.76 16 37 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.13 0.13 7.09 -2.39 -0.02 0.11 16 39 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -81.21 329.12 0.59 -80.61 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -0.13 Total: 33.41 kcal Atomic # 6 Polarization: 45.64 SS G_CDS: 8.96 Total: 54.60 kcal Atomic # 7 Polarization: -141.74 SS G_CDS: -8.26 Total: -150.00 kcal Atomic # 8 Polarization: -61.27 SS G_CDS: -2.01 Total: -63.28 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -81.21 0.59 -80.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218781673.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.818 kcal (2) G-P(sol) polarization free energy of solvation -81.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds