Wall clock time and date at job start Tue Mar 31 2020 08:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47290 * 2 1 4 4 N 1.46897 * 109.47320 * 182.72237 * 3 2 1 5 5 C 1.46898 * 111.00428 * 299.23382 * 4 3 2 6 6 C 1.50704 * 109.46951 * 288.46311 * 5 4 3 7 7 H 1.07996 * 120.00152 * 4.17183 * 6 5 4 8 8 C 1.37883 * 119.99657 * 184.17907 * 6 5 4 9 9 N 1.31505 * 120.00334 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99536 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47408 * 59.99912 * 10 8 6 12 12 H 1.48498 * 109.47074 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47610 * 300.00008 * 10 8 6 14 14 C 1.46903 * 110.99975 * 63.18717 * 4 3 2 15 15 C 1.50697 * 109.47212 * 76.40268 * 14 4 3 16 16 C 1.37843 * 119.93627 * 95.94719 * 15 14 4 17 17 C 1.39685 * 119.87461 * 179.72907 * 16 15 14 18 18 C 1.47602 * 120.12296 * 180.27395 * 17 16 15 19 19 O 1.21487 * 120.00090 * 0.27260 * 18 17 16 20 20 O 1.34727 * 119.99788 * 180.27646 * 18 17 16 21 21 C 1.39728 * 119.75472 * 0.55036 * 17 16 15 22 22 C 1.37793 * 119.87158 * 359.72420 * 21 17 16 23 23 C 1.38640 * 119.94378 * 276.22635 * 15 14 4 24 24 F 1.35102 * 119.87237 * 0.02562 * 23 15 14 25 25 H 1.09007 * 109.46996 * 300.00000 * 1 2 3 26 26 H 1.09003 * 109.46856 * 59.99846 * 1 2 3 27 27 H 1.08996 * 109.47225 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47010 * 240.00393 * 2 1 3 29 29 H 1.08997 * 109.47528 * 120.00189 * 2 1 3 30 30 H 1.09003 * 109.47004 * 62.72422 * 3 2 1 31 31 H 1.08994 * 109.47148 * 302.72634 * 3 2 1 32 32 H 1.08999 * 109.46713 * 48.45655 * 5 4 3 33 33 H 1.08994 * 109.47752 * 168.45999 * 5 4 3 34 34 H 0.97000 * 120.00456 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.47380 * 196.40516 * 14 4 3 36 36 H 1.09005 * 109.46766 * 316.40671 * 14 4 3 37 37 H 1.08006 * 120.06476 * 359.97438 * 16 15 14 38 38 H 0.96698 * 117.00128 * 179.97438 * 20 18 17 39 39 H 1.08005 * 120.06397 * 179.70851 * 21 17 16 40 40 H 1.08007 * 119.93676 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5075 1.4430 -0.0658 5 6 4.0869 0.7546 1.0954 6 6 3.9015 1.6036 2.3267 7 1 3.3445 2.5269 2.2671 8 6 4.4431 1.2015 3.5292 9 7 5.1210 0.0770 3.6019 10 14 4.2139 2.2541 5.0552 11 1 2.7644 2.3975 5.3446 12 1 4.8868 1.6059 6.2094 13 1 4.8077 3.5956 4.8250 14 6 3.9784 0.8440 -1.3218 15 6 3.7956 1.8290 -2.4476 16 6 4.8476 2.6289 -2.8393 17 6 4.6785 3.5375 -3.8868 18 6 5.8030 4.3924 -4.3147 19 8 6.8796 4.3031 -3.7590 20 8 5.6354 5.2718 -5.3216 21 6 3.4391 3.6381 -4.5241 22 6 2.3928 2.8374 -4.1204 23 6 2.5681 1.9331 -3.0836 24 9 1.5386 1.1510 -2.6915 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.7171 1.9420 0.9134 31 1 1.6373 1.9702 -0.8645 32 1 3.5870 -0.2037 1.2362 33 1 5.1506 0.5881 0.9257 34 1 5.5017 -0.2061 4.4479 35 1 5.0342 0.5895 -1.2295 36 1 3.4040 -0.0583 -1.5317 37 1 5.8021 2.5506 -2.3400 38 1 6.4005 5.8101 -5.5661 39 1 3.3014 4.3422 -5.3314 40 1 1.4342 2.9146 -4.6120 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231458082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:23 Heat of formation + Delta-G solvation = -109.165172 kcal Electronic energy + Delta-G solvation = -23964.556055 eV Core-core repulsion = 20272.749981 eV Total energy + Delta-G solvation = -3691.806074 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.02080 -40.48617 -38.84888 -37.23446 -36.20745 -32.81216 -32.79300 -31.10720 -30.95623 -27.29903 -26.19639 -24.66395 -24.07861 -22.18051 -22.12303 -21.07635 -19.33839 -18.15643 -17.62238 -17.06360 -16.46838 -16.21124 -16.00241 -15.66852 -14.90176 -14.62459 -14.47633 -14.29937 -13.78496 -13.65501 -13.60710 -13.12475 -12.97028 -12.59069 -12.37796 -12.14448 -11.69445 -11.61247 -11.30922 -11.23593 -10.96772 -10.90161 -10.83286 -10.73110 -10.66727 -10.46209 -9.89552 -9.74406 -9.28134 -9.08038 -8.76743 -8.39721 -7.21715 -6.00651 -4.01176 0.48274 1.15116 2.36510 2.84627 3.35261 3.39191 3.42387 3.54052 4.13932 4.44499 4.55327 4.69220 4.89770 5.02217 5.15114 5.18117 5.36097 5.53549 5.53880 5.62789 5.74310 5.85398 5.86018 5.98142 6.03634 6.08962 6.11928 6.27605 6.32510 6.41344 6.43058 6.50431 6.69545 6.72994 6.94767 7.25997 7.38897 7.74617 7.80591 8.08272 8.18913 8.53105 9.05136 9.62363 11.09978 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.013880 B = 0.004710 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.750051 B = 5943.646892 C = 7410.119390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.161 4.161 3 C 0.059 3.941 4 N -0.528 5.528 5 C 0.189 3.811 6 C -0.503 4.503 7 H 0.061 0.939 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.897 3.103 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.277 1.277 14 C 0.081 3.919 15 C -0.102 4.102 16 C -0.007 4.007 17 C -0.145 4.145 18 C 0.530 3.470 19 O -0.509 6.509 20 O -0.515 6.515 21 C -0.042 4.042 22 C -0.172 4.172 23 C 0.141 3.859 24 F -0.124 7.124 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.000 1.000 33 H 0.031 0.969 34 H 0.261 0.739 35 H 0.084 0.916 36 H 0.049 0.951 37 H 0.149 0.851 38 H 0.413 0.587 39 H 0.144 0.856 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.943 5.096 -18.368 19.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.200 4.200 3 C -0.069 4.069 4 N -0.250 5.250 5 C 0.064 3.936 6 C -0.541 4.541 7 H 0.079 0.921 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.047 4.047 15 C -0.103 4.103 16 C -0.026 4.026 17 C -0.147 4.147 18 C 0.374 3.626 19 O -0.398 6.398 20 O -0.327 6.327 21 C -0.060 4.060 22 C -0.191 4.191 23 C 0.121 3.879 24 F -0.102 7.102 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.018 0.982 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.067 0.933 37 H 0.167 0.833 38 H 0.272 0.728 39 H 0.162 0.838 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.746 5.171 -17.917 19.243 hybrid contribution -0.027 -0.079 0.821 0.825 sum -4.773 5.093 -17.096 18.466 Atomic orbital electron populations 1.21629 0.96432 1.00628 1.01184 1.22136 0.95648 1.00180 1.02006 1.22210 0.88170 0.94776 1.01770 1.62408 1.06730 1.54753 1.01151 1.19858 0.94654 0.92810 0.86259 1.21080 1.33563 1.07108 0.92382 0.92068 1.24950 0.95320 0.95248 0.98974 1.69933 1.35974 1.21880 1.26147 0.86584 0.78233 0.80522 0.82209 1.20336 1.21403 1.20210 1.21093 1.01804 0.92862 0.88982 1.20040 0.91725 1.00216 0.98347 1.21083 0.99502 0.90116 0.91904 1.19008 0.93032 1.01104 1.01540 1.20792 0.87485 0.77785 0.76532 1.90926 1.27656 1.67066 1.54193 1.84542 1.46661 1.50550 1.50959 1.21180 0.90612 0.96525 0.97710 1.21055 1.01003 0.98184 0.98819 1.17941 0.84524 0.90859 0.94541 1.91521 1.56904 1.72275 1.89502 0.92926 0.93346 0.93666 0.92756 0.90837 0.90403 0.92480 0.98202 0.95133 0.92912 0.89745 0.93286 0.83347 0.72817 0.83850 0.84118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.16 -2.86 4.72 -26.73 -0.13 -2.98 16 3 C 0.06 1.13 4.65 -3.82 -0.02 1.12 16 4 N -0.53 -11.09 4.57 -237.52 -1.09 -12.17 16 5 C 0.19 4.77 4.57 -4.97 -0.02 4.75 16 6 C -0.50 -13.98 8.64 -34.44 -0.30 -14.28 16 7 H 0.06 1.70 7.34 -52.49 -0.39 1.32 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.54 13.29 55.43 0.74 -25.80 16 10 Si 0.90 21.77 29.54 -169.99 -5.02 16.74 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 14 C 0.08 1.41 4.89 -4.98 -0.02 1.39 16 15 C -0.10 -1.54 5.27 -104.62 -0.55 -2.09 16 16 C -0.01 -0.11 9.21 -39.19 -0.36 -0.47 16 17 C -0.15 -1.82 5.87 -104.98 -0.62 -2.44 16 18 C 0.53 6.48 8.27 34.55 0.29 6.76 16 19 O -0.51 -7.89 17.13 -19.26 -0.33 -8.22 16 20 O -0.52 -4.32 12.68 -40.57 -0.51 -4.83 16 21 C -0.04 -0.43 9.61 -39.19 -0.38 -0.81 16 22 C -0.17 -1.85 10.01 -39.58 -0.40 -2.25 16 23 C 0.14 1.92 6.33 -39.26 -0.25 1.67 16 24 F -0.12 -1.76 13.08 2.25 0.03 -1.73 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.93 5.51 -51.93 -0.29 0.64 16 29 H 0.07 1.51 6.33 -51.93 -0.33 1.18 16 30 H 0.08 1.64 7.15 -51.93 -0.37 1.27 16 31 H 0.06 1.01 4.99 -51.93 -0.26 0.75 16 32 H 0.00 0.01 5.85 -51.93 -0.30 -0.30 16 33 H 0.03 0.83 7.69 -51.93 -0.40 0.43 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.08 1.47 7.54 -51.93 -0.39 1.08 16 36 H 0.05 0.84 5.41 -51.93 -0.28 0.56 16 37 H 0.15 2.24 7.65 -52.48 -0.40 1.84 16 38 H 0.41 1.63 9.11 45.56 0.42 2.05 16 39 H 0.14 1.11 7.61 -52.48 -0.40 0.71 16 40 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 331.99 15.07 5.00 5.00 Total: -1.00 -31.96 331.99 -7.88 -39.84 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.22 Total: 1.03 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -2.48 Total: -9.86 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: -0.35 Total: -37.97 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.84 Total: -13.05 kcal Atomic # 9 Polarization: -1.76 SS G_CDS: 0.03 Total: -1.73 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.96 -7.88 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231458082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.326 kcal (2) G-P(sol) polarization free energy of solvation -31.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds