Wall clock time and date at job start Tue Mar 31 2020 08:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47290 * 2 1 4 4 N 1.46897 * 109.47320 * 182.72237 * 3 2 1 5 5 C 1.46898 * 111.00428 * 299.23382 * 4 3 2 6 6 C 1.50704 * 109.46951 * 288.46311 * 5 4 3 7 7 H 1.07996 * 120.00152 * 4.17183 * 6 5 4 8 8 C 1.37883 * 119.99657 * 184.17907 * 6 5 4 9 9 N 1.31505 * 120.00334 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99536 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47408 * 59.99912 * 10 8 6 12 12 H 1.48498 * 109.47074 * 179.97438 * 10 8 6 13 13 H 1.48498 * 109.47610 * 300.00008 * 10 8 6 14 14 C 1.46903 * 110.99975 * 63.18717 * 4 3 2 15 15 C 1.50697 * 109.47212 * 76.40268 * 14 4 3 16 16 C 1.37843 * 119.93627 * 95.94719 * 15 14 4 17 17 C 1.39685 * 119.87461 * 179.72907 * 16 15 14 18 18 C 1.47602 * 120.12296 * 180.27395 * 17 16 15 19 19 O 1.21487 * 120.00090 * 0.27260 * 18 17 16 20 20 O 1.34727 * 119.99788 * 180.27646 * 18 17 16 21 21 C 1.39728 * 119.75472 * 0.55036 * 17 16 15 22 22 C 1.37793 * 119.87158 * 359.72420 * 21 17 16 23 23 C 1.38640 * 119.94378 * 276.22635 * 15 14 4 24 24 F 1.35102 * 119.87237 * 0.02562 * 23 15 14 25 25 H 1.09007 * 109.46996 * 300.00000 * 1 2 3 26 26 H 1.09003 * 109.46856 * 59.99846 * 1 2 3 27 27 H 1.08996 * 109.47225 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47010 * 240.00393 * 2 1 3 29 29 H 1.08997 * 109.47528 * 120.00189 * 2 1 3 30 30 H 1.09003 * 109.47004 * 62.72422 * 3 2 1 31 31 H 1.08994 * 109.47148 * 302.72634 * 3 2 1 32 32 H 1.08999 * 109.46713 * 48.45655 * 5 4 3 33 33 H 1.08994 * 109.47752 * 168.45999 * 5 4 3 34 34 H 0.97000 * 120.00456 * 180.02562 * 9 8 6 35 35 H 1.08997 * 109.47380 * 196.40516 * 14 4 3 36 36 H 1.09005 * 109.46766 * 316.40671 * 14 4 3 37 37 H 1.08006 * 120.06476 * 359.97438 * 16 15 14 38 38 H 0.96698 * 117.00128 * 179.97438 * 20 18 17 39 39 H 1.08005 * 120.06397 * 179.70851 * 21 17 16 40 40 H 1.08007 * 119.93676 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5075 1.4430 -0.0658 5 6 4.0869 0.7546 1.0954 6 6 3.9015 1.6036 2.3267 7 1 3.3445 2.5269 2.2671 8 6 4.4431 1.2015 3.5292 9 7 5.1210 0.0770 3.6019 10 14 4.2139 2.2541 5.0552 11 1 2.7644 2.3975 5.3446 12 1 4.8868 1.6059 6.2094 13 1 4.8077 3.5956 4.8250 14 6 3.9784 0.8440 -1.3218 15 6 3.7956 1.8290 -2.4476 16 6 4.8476 2.6289 -2.8393 17 6 4.6785 3.5375 -3.8868 18 6 5.8030 4.3924 -4.3147 19 8 6.8796 4.3031 -3.7590 20 8 5.6354 5.2718 -5.3216 21 6 3.4391 3.6381 -4.5241 22 6 2.3928 2.8374 -4.1204 23 6 2.5681 1.9331 -3.0836 24 9 1.5386 1.1510 -2.6915 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.7171 1.9420 0.9134 31 1 1.6373 1.9702 -0.8645 32 1 3.5870 -0.2037 1.2362 33 1 5.1506 0.5881 0.9257 34 1 5.5017 -0.2061 4.4479 35 1 5.0342 0.5895 -1.2295 36 1 3.4040 -0.0583 -1.5317 37 1 5.8021 2.5506 -2.3400 38 1 6.4005 5.8101 -5.5661 39 1 3.3014 4.3422 -5.3314 40 1 1.4342 2.9146 -4.6120 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231458082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:22 Heat of formation + Delta-G solvation = -130.169791 kcal Electronic energy + Delta-G solvation = -23965.466884 eV Core-core repulsion = 20272.749981 eV Total energy + Delta-G solvation = -3692.716903 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.09218 -41.43905 -39.98792 -38.69782 -37.08003 -34.88824 -34.06381 -32.50507 -31.99497 -29.17161 -27.60211 -25.83728 -25.57441 -23.80340 -23.27963 -22.14461 -20.86281 -19.09156 -18.68368 -18.36527 -17.99832 -17.54668 -17.26073 -16.72368 -16.63094 -16.10992 -15.76613 -15.56168 -15.24320 -14.89419 -14.74726 -14.36328 -14.20561 -14.04966 -13.59532 -13.42629 -13.22379 -12.90716 -12.72492 -12.69150 -12.56339 -12.55710 -12.28093 -12.27411 -12.02567 -11.78904 -11.75269 -11.34205 -11.28162 -10.58751 -10.09313 -9.84137 -8.93771 -8.18465 -6.27470 -0.51164 0.16235 1.39053 1.40203 1.42772 1.50506 2.01199 2.40024 2.55002 3.12730 3.13390 3.39175 3.58868 3.74338 3.95421 4.03600 4.09192 4.14674 4.19699 4.45763 4.51397 4.55342 4.71443 4.80914 4.82342 4.89712 5.01685 5.03982 5.08929 5.11850 5.17015 5.27916 5.30455 5.40571 5.49090 5.57204 5.66294 5.71669 6.06832 6.35916 6.59634 6.86529 6.96916 7.40968 8.91702 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.013880 B = 0.004710 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.750051 B = 5943.646892 C = 7410.119390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.153 4.153 3 C 0.064 3.936 4 N -0.538 5.538 5 C 0.205 3.795 6 C -0.518 4.518 7 H 0.057 0.943 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.964 3.036 11 H -0.268 1.268 12 H -0.283 1.283 13 H -0.271 1.271 14 C 0.084 3.916 15 C -0.121 4.121 16 C -0.022 4.022 17 C -0.152 4.152 18 C 0.538 3.462 19 O -0.552 6.552 20 O -0.497 6.497 21 C -0.020 4.020 22 C -0.155 4.155 23 C 0.132 3.868 24 F -0.129 7.129 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.080 0.920 32 H -0.019 1.019 33 H 0.000 1.000 34 H 0.264 0.736 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.127 0.873 38 H 0.435 0.565 39 H 0.182 0.818 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.972 7.015 -20.476 22.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.192 4.192 3 C -0.064 4.064 4 N -0.260 5.260 5 C 0.079 3.921 6 C -0.556 4.556 7 H 0.075 0.925 8 C -0.194 4.194 9 N -0.574 5.574 10 Si 0.789 3.211 11 H -0.193 1.193 12 H -0.208 1.208 13 H -0.197 1.197 14 C -0.043 4.043 15 C -0.122 4.122 16 C -0.041 4.041 17 C -0.153 4.153 18 C 0.383 3.617 19 O -0.444 6.444 20 O -0.311 6.311 21 C -0.037 4.037 22 C -0.173 4.173 23 C 0.112 3.888 24 F -0.107 7.107 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.098 0.902 32 H -0.001 1.001 33 H 0.019 0.981 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.145 0.855 38 H 0.297 0.703 39 H 0.199 0.801 40 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -6.790 7.115 -20.069 22.349 hybrid contribution 0.615 -0.627 1.319 1.584 sum -6.174 6.488 -18.751 20.780 Atomic orbital electron populations 1.21581 0.93745 1.01898 1.01964 1.22015 0.97950 0.98697 1.00503 1.22181 0.86964 0.95737 1.01476 1.62286 1.07988 1.54608 1.01157 1.19472 0.92851 0.92068 0.87702 1.21384 1.33471 1.07151 0.93636 0.92456 1.25824 0.94888 0.96452 1.02211 1.70061 1.36851 1.23509 1.27011 0.85515 0.78630 0.78733 0.78218 1.19252 1.20788 1.19667 1.21010 1.00919 0.93969 0.88426 1.19730 0.93246 1.00781 0.98468 1.20938 0.98657 0.91351 0.93196 1.19112 0.94400 1.00683 1.01142 1.20718 0.86583 0.77782 0.76577 1.90921 1.29209 1.68442 1.55833 1.84476 1.47804 1.49725 1.49059 1.21583 0.88937 0.95949 0.97280 1.21436 1.02585 0.96200 0.97122 1.18116 0.83606 0.91635 0.95440 1.91497 1.56887 1.72628 1.89723 0.93153 0.91486 0.92207 0.92130 0.94406 0.92751 0.90221 1.00124 0.98146 0.92773 0.91042 0.92983 0.85462 0.70290 0.80093 0.80399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.91 71.98 0.71 -3.11 16 2 C -0.15 -5.51 4.72 30.59 0.14 -5.36 16 3 C 0.06 2.51 4.65 86.30 0.40 2.91 16 4 N -0.54 -23.65 4.57 -905.38 -4.14 -27.79 16 5 C 0.20 11.02 4.57 85.56 0.39 11.41 16 6 C -0.52 -29.93 8.64 25.60 0.22 -29.71 16 7 H 0.06 3.28 7.34 -2.91 -0.02 3.26 16 8 C 0.00 0.24 5.46 84.66 0.46 0.70 16 9 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 10 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 14 C 0.08 3.11 4.89 85.56 0.42 3.53 16 15 C -0.12 -3.67 5.27 -19.86 -0.10 -3.77 16 16 C -0.02 -0.66 9.21 22.53 0.21 -0.45 16 17 C -0.15 -3.54 5.87 -20.10 -0.12 -3.65 16 18 C 0.54 12.27 8.27 70.29 0.58 12.85 16 19 O -0.55 -17.11 17.13 19.88 0.34 -16.77 16 20 O -0.50 -6.61 12.68 -56.37 -0.71 -7.33 16 21 C -0.02 -0.32 9.61 22.52 0.22 -0.10 16 22 C -0.16 -2.68 10.01 22.27 0.22 -2.45 16 23 C 0.13 3.31 6.33 22.47 0.14 3.45 16 24 F -0.13 -3.39 13.08 44.97 0.59 -2.80 16 25 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 2.09 5.51 -2.39 -0.01 2.07 16 29 H 0.04 1.62 6.33 -2.39 -0.02 1.61 16 30 H 0.05 2.35 7.15 -2.39 -0.02 2.34 16 31 H 0.08 2.74 4.99 -2.39 -0.01 2.73 16 32 H -0.02 -1.07 5.85 -2.39 -0.01 -1.08 16 33 H 0.00 0.02 7.69 -2.39 -0.02 0.01 16 34 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.07 2.74 7.54 -2.39 -0.02 2.72 16 36 H 0.05 1.85 5.41 -2.38 -0.01 1.84 16 37 H 0.13 4.18 7.65 -2.91 -0.02 4.16 16 38 H 0.43 2.01 9.11 -74.06 -0.67 1.33 16 39 H 0.18 1.67 7.61 -2.91 -0.02 1.65 16 40 H 0.18 1.82 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -72.35 331.99 2.69 -69.65 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.41 Total: 8.11 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 3.90 Total: -13.76 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -3.86 Total: -84.43 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.37 Total: -24.09 kcal Atomic # 9 Polarization: -3.39 SS G_CDS: 0.59 Total: -2.80 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -72.35 2.69 -69.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231458082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.515 kcal (2) G-P(sol) polarization free energy of solvation -72.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds