Wall clock time and date at job start Tue Mar 31 2020 07:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46867 * 2 1 4 4 C 1.53002 * 109.46867 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46897 * 180.02562 * 4 3 2 6 6 C 1.36935 * 119.99816 * 275.31396 * 5 4 3 7 7 H 1.08003 * 120.00262 * 38.97009 * 6 5 4 8 8 C 1.38811 * 119.99670 * 218.96946 * 6 5 4 9 9 N 1.31618 * 120.00262 * 19.31038 * 8 6 5 10 10 Si 1.86802 * 119.99820 * 199.30514 * 8 6 5 11 11 H 1.48505 * 109.46793 * 90.00674 * 10 8 6 12 12 H 1.48499 * 109.47056 * 210.00139 * 10 8 6 13 13 H 1.48494 * 109.47491 * 330.00650 * 10 8 6 14 14 C 1.46501 * 119.99996 * 95.31210 * 5 4 3 15 15 C 1.50698 * 109.47213 * 270.00163 * 14 5 4 16 16 C 1.37837 * 119.94129 * 104.72800 * 15 14 5 17 17 C 1.39687 * 119.87651 * 179.72981 * 16 15 14 18 18 C 1.47597 * 120.12534 * 180.26988 * 17 16 15 19 19 O 1.21487 * 120.00027 * 0.27079 * 18 17 16 20 20 O 1.34725 * 119.99681 * 180.27469 * 18 17 16 21 21 C 1.39733 * 119.75352 * 0.53997 * 17 16 15 22 22 C 1.37805 * 119.86733 * 359.73245 * 21 17 16 23 23 C 1.38650 * 119.93759 * 284.99762 * 15 14 5 24 24 F 1.35103 * 119.87172 * 0.02690 * 23 15 14 25 25 H 1.08997 * 109.47345 * 60.00192 * 1 2 3 26 26 H 1.09004 * 109.46710 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47199 * 299.99873 * 1 2 3 28 28 H 1.09003 * 109.46948 * 240.00238 * 2 1 3 29 29 H 1.08998 * 109.46829 * 119.99901 * 2 1 3 30 30 H 1.08997 * 109.46690 * 59.99796 * 3 2 1 31 31 H 1.08997 * 109.46981 * 300.00030 * 3 2 1 32 32 H 1.08994 * 109.47199 * 60.00127 * 4 3 2 33 33 H 1.08998 * 109.46829 * 299.99901 * 4 3 2 34 34 H 0.96999 * 120.00098 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.46944 * 29.99822 * 14 5 4 36 36 H 1.09000 * 109.47163 * 149.99828 * 14 5 4 37 37 H 1.08003 * 120.06219 * 359.97438 * 16 15 14 38 38 H 0.96710 * 116.99819 * 180.02562 * 20 18 17 39 39 H 1.07993 * 120.06571 * 179.70702 * 21 17 16 40 40 H 1.08007 * 119.93065 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1824 3.5066 -1.1805 7 1 3.4374 3.3888 -1.9535 8 6 5.2659 4.3503 -1.3836 9 7 6.3479 4.2213 -0.6454 10 14 5.1882 5.6686 -2.7048 11 1 4.6398 6.9203 -2.1233 12 1 6.5535 5.9237 -3.2303 13 1 4.3097 5.2101 -3.8107 14 6 4.4137 3.4745 1.2635 15 6 3.2018 4.1691 1.8292 16 6 2.5303 3.6183 2.8995 17 6 1.4105 4.2662 3.4264 18 6 0.6909 3.6844 4.5762 19 8 1.0751 2.6427 5.0694 20 8 -0.3922 4.3085 5.0788 21 6 0.9707 5.4641 2.8572 22 6 1.6465 6.0026 1.7837 23 6 2.7610 5.3580 1.2684 24 9 3.4195 5.8903 0.2156 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.9329 0.9289 -0.8908 33 1 3.9336 0.9286 0.8891 34 1 7.1051 4.8106 -0.7876 35 1 4.7663 2.7247 1.9717 36 1 5.2021 4.2061 1.0863 37 1 2.8717 2.6897 3.3326 38 1 -0.8301 3.8895 5.8324 39 1 0.1028 5.9668 3.2575 40 1 1.3073 6.9284 1.3427 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231461446.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:08 Heat of formation + Delta-G solvation = -104.685583 kcal Electronic energy + Delta-G solvation = -24591.545579 eV Core-core repulsion = 20899.933754 eV Total energy + Delta-G solvation = -3691.611825 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.08503 -40.22644 -38.33640 -36.25449 -36.01964 -34.12661 -31.80548 -30.86418 -30.57040 -27.95324 -25.72769 -24.27601 -23.93071 -21.96924 -21.28994 -20.43519 -20.06620 -17.95209 -17.33433 -16.67234 -16.51133 -15.75192 -15.55372 -14.92495 -14.81145 -14.69491 -14.20953 -13.65803 -13.53659 -13.49407 -13.41930 -12.95529 -12.54130 -12.32553 -12.15558 -12.01368 -11.82817 -11.46803 -11.20273 -11.09509 -10.88036 -10.67982 -10.60863 -10.53978 -10.45438 -10.32690 -10.08898 -9.97889 -9.74253 -8.65625 -8.49043 -8.18074 -6.63034 -5.84475 -3.43092 0.90175 1.59687 2.68393 3.08661 3.37549 3.43793 3.45926 3.96963 4.47506 4.77428 4.97564 5.17414 5.23708 5.30115 5.36449 5.39937 5.57094 5.60792 5.65435 5.78390 5.97440 6.11635 6.16734 6.22445 6.31482 6.35434 6.37637 6.39581 6.43026 6.52476 6.56769 6.63235 6.69786 6.92435 6.98062 7.15614 7.25119 7.48598 7.79810 7.94285 8.47465 9.12537 9.74494 10.32073 11.16306 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.006412 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.423924 B = 4365.853462 C = 5616.976239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.137 4.137 4 C 0.148 3.852 5 N -0.573 5.573 6 C -0.257 4.257 7 H 0.059 0.941 8 C 0.027 3.973 9 N -0.884 5.884 10 Si 0.893 3.107 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.278 1.278 14 C 0.175 3.825 15 C -0.125 4.125 16 C -0.029 4.029 17 C -0.158 4.158 18 C 0.531 3.469 19 O -0.520 6.520 20 O -0.516 6.516 21 C -0.053 4.053 22 C -0.183 4.183 23 C 0.163 3.837 24 F -0.108 7.108 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.035 0.965 34 H 0.256 0.744 35 H 0.043 0.957 36 H 0.110 0.890 37 H 0.136 0.864 38 H 0.409 0.591 39 H 0.136 0.864 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.885 0.034 7.707 13.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.177 4.177 4 C 0.022 3.978 5 N -0.291 5.291 6 C -0.386 4.386 7 H 0.076 0.924 8 C -0.174 4.174 9 N -0.526 5.526 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.219 1.219 13 H -0.203 1.203 14 C 0.048 3.952 15 C -0.129 4.129 16 C -0.048 4.048 17 C -0.159 4.159 18 C 0.377 3.623 19 O -0.410 6.410 20 O -0.327 6.327 21 C -0.072 4.072 22 C -0.202 4.202 23 C 0.142 3.858 24 F -0.086 7.086 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.127 0.873 37 H 0.154 0.846 38 H 0.267 0.733 39 H 0.154 0.846 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.328 0.010 7.398 12.705 hybrid contribution -0.427 0.644 -0.332 0.841 sum -10.756 0.654 7.066 12.886 Atomic orbital electron populations 1.21755 0.96816 1.00572 1.01446 1.21491 0.95004 0.98285 1.01243 1.22206 0.99502 0.94571 1.01442 1.20937 0.91127 0.86711 0.99036 1.43711 1.75549 1.08099 1.01751 1.18933 1.03543 1.22415 0.93744 0.92385 1.25125 0.94059 1.00579 0.97648 1.69936 1.03210 1.37903 1.41536 0.86471 0.76809 0.82920 0.81594 1.20675 1.21877 1.20325 1.20054 0.91589 0.97007 0.86509 1.21463 1.02559 0.93990 0.94913 1.21017 0.91669 0.98460 0.93663 1.18926 0.99763 0.98997 0.98232 1.20960 0.77563 0.81537 0.82246 1.90873 1.66395 1.23541 1.60170 1.84581 1.42238 1.55662 1.50264 1.21010 0.98404 0.93719 0.94019 1.21088 0.97048 1.02407 0.99633 1.17964 0.90713 0.91984 0.85101 1.91630 1.79071 1.84939 1.52918 0.93089 0.93546 0.93206 0.92486 0.92652 0.93017 0.92568 0.93438 0.94635 0.93379 0.93910 0.87316 0.84596 0.73289 0.84627 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.62 16 2 C -0.12 -1.83 5.93 -26.73 -0.16 -1.99 16 3 C -0.14 -2.49 5.51 -26.73 -0.15 -2.63 16 4 C 0.15 3.03 5.72 -4.04 -0.02 3.01 16 5 N -0.57 -13.52 2.41 -174.61 -0.42 -13.94 16 6 C -0.26 -6.70 8.28 -15.06 -0.12 -6.83 16 7 H 0.06 1.56 7.90 -52.48 -0.41 1.14 16 8 C 0.03 0.72 4.02 -17.43 -0.07 0.65 16 9 N -0.88 -24.48 11.44 55.49 0.63 -23.85 16 10 Si 0.89 21.43 28.93 -169.99 -4.92 16.51 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 C 0.17 3.91 5.18 -5.19 -0.03 3.88 16 15 C -0.12 -2.44 5.26 -104.62 -0.55 -2.99 16 16 C -0.03 -0.50 8.54 -39.19 -0.33 -0.83 16 17 C -0.16 -2.44 5.87 -104.98 -0.62 -3.06 16 18 C 0.53 7.61 8.27 34.55 0.29 7.89 16 19 O -0.52 -8.75 17.13 -19.26 -0.33 -9.08 16 20 O -0.52 -5.40 12.68 -40.56 -0.51 -5.91 16 21 C -0.05 -0.74 9.61 -39.18 -0.38 -1.12 16 22 C -0.18 -2.87 10.01 -39.58 -0.40 -3.26 16 23 C 0.16 3.17 7.21 -39.27 -0.28 2.89 16 24 F -0.11 -2.43 13.81 2.25 0.03 -2.40 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.97 7.26 -51.93 -0.38 0.59 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 33 H 0.04 0.69 7.83 -51.93 -0.41 0.28 16 34 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 35 H 0.04 0.90 7.66 -51.93 -0.40 0.50 16 36 H 0.11 2.77 5.47 -51.93 -0.28 2.49 16 37 H 0.14 2.31 7.59 -52.48 -0.40 1.91 16 38 H 0.41 2.32 9.11 45.56 0.42 2.74 16 39 H 0.14 1.54 7.61 -52.49 -0.40 1.14 16 40 H 0.13 1.79 8.06 -52.48 -0.42 1.36 16 LS Contribution 340.78 15.07 5.14 5.14 Total: -1.00 -29.73 340.78 -7.61 -37.34 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -4.78 Total: 2.21 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.45 Total: -6.02 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: 0.21 Total: -37.79 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.84 Total: -14.99 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.03 Total: -2.40 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.92 Total: 16.51 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.73 -7.61 -37.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231461446.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.342 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds