Wall clock time and date at job start Tue Mar 31 2020 08:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46722 * 2 1 4 4 N 1.46904 * 109.46963 * 183.40419 * 3 2 1 5 5 C 1.46902 * 111.00126 * 61.36612 * 4 3 2 6 6 C 1.50698 * 109.47211 * 68.91451 * 5 4 3 7 7 H 1.08001 * 119.99942 * 5.02255 * 6 5 4 8 8 C 1.37878 * 119.99891 * 185.01900 * 6 5 4 9 9 N 1.31512 * 119.99894 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99732 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47587 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47172 * 119.99953 * 10 8 6 13 13 H 1.48506 * 109.46863 * 239.99701 * 10 8 6 14 14 C 1.46903 * 110.99872 * 297.41258 * 4 3 2 15 15 C 1.50704 * 109.46721 * 290.08121 * 14 4 3 16 16 C 1.37976 * 120.05059 * 105.15809 * 15 14 4 17 17 C 1.38307 * 120.17822 * 179.74482 * 16 15 14 18 18 C 1.38597 * 120.27577 * 0.55204 * 17 16 15 19 19 F 1.35105 * 119.95037 * 179.72918 * 18 17 16 20 20 C 1.38155 * 120.10141 * 359.69745 * 18 17 16 21 21 C 1.39606 * 120.04993 * 285.42573 * 15 14 4 22 22 C 1.47735 * 120.13651 * 0.02562 * 21 15 14 23 23 O 1.21467 * 120.00114 * 5.95853 * 22 21 15 24 24 O 1.34707 * 119.99763 * 185.95938 * 22 21 15 25 25 H 1.08992 * 109.47194 * 60.00041 * 1 2 3 26 26 H 1.09004 * 109.46800 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46809 * 299.99309 * 1 2 3 28 28 H 1.09001 * 109.46809 * 240.00690 * 2 1 3 29 29 H 1.08996 * 109.47636 * 120.00181 * 2 1 3 30 30 H 1.08992 * 109.47094 * 63.40461 * 3 2 1 31 31 H 1.09002 * 109.46961 * 303.40187 * 3 2 1 32 32 H 1.08994 * 109.47091 * 188.91768 * 5 4 3 33 33 H 1.09005 * 109.46964 * 308.91465 * 5 4 3 34 34 H 0.97004 * 119.99666 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.46943 * 50.07632 * 14 4 3 36 36 H 1.08998 * 109.46851 * 170.08274 * 14 4 3 37 37 H 1.08001 * 119.90526 * 0.02562 * 16 15 14 38 38 H 1.08000 * 119.86151 * 180.25392 * 17 16 15 39 39 H 1.07999 * 120.09049 * 180.02562 * 20 18 17 40 40 H 0.96703 * 116.99997 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5067 1.4434 -0.0822 5 6 3.9646 0.8105 -1.3263 6 6 3.6007 1.6850 -2.4984 7 1 3.1545 2.6542 -2.3310 8 6 3.8375 1.2479 -3.7844 9 7 4.3814 0.0680 -3.9882 10 14 3.3872 2.3323 -5.2372 11 1 2.7947 3.6011 -4.7430 12 1 4.6074 2.6307 -6.0293 13 1 2.4008 1.6268 -6.0944 14 6 4.1001 0.7883 1.0911 15 6 3.8919 1.6528 2.3079 16 6 2.9451 1.3045 3.2491 17 6 2.7555 2.0931 4.3694 18 6 3.5064 3.2441 4.5489 19 9 3.3119 4.0125 5.6430 20 6 4.4540 3.6065 3.6111 21 6 4.6528 2.8104 2.4815 22 6 5.6635 3.1918 1.4737 23 8 5.7596 2.5600 0.4408 24 8 6.4784 4.2402 1.7005 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5137 -0.8901 29 1 1.8935 -0.5138 0.8899 30 1 1.7273 1.9384 0.9189 31 1 1.6276 1.9736 -0.8579 32 1 5.0463 0.6812 -1.2914 33 1 3.4858 -0.1626 -1.4365 34 1 4.5476 -0.2397 -4.8930 35 1 3.6231 -0.1792 1.2470 36 1 5.1679 0.6448 0.9258 37 1 2.3537 0.4111 3.1129 38 1 2.0158 1.8134 5.1050 39 1 5.0393 4.5032 3.7514 40 1 7.1239 4.4513 1.0121 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238235019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:15 Heat of formation + Delta-G solvation = -100.473937 kcal Electronic energy + Delta-G solvation = -24416.233333 eV Core-core repulsion = 20724.804139 eV Total energy + Delta-G solvation = -3691.429194 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.95998 -40.34319 -38.59228 -37.07967 -35.65885 -32.73729 -32.38713 -31.54747 -30.70223 -27.10813 -26.14753 -24.75818 -23.60078 -22.26882 -22.03334 -20.85823 -19.19594 -18.11945 -17.37354 -16.41233 -16.20522 -15.77626 -15.69238 -15.32408 -15.23222 -14.93344 -14.59476 -14.24658 -13.83734 -13.55686 -13.36964 -13.22976 -12.82783 -12.37033 -12.18640 -11.77364 -11.58854 -11.50086 -11.31535 -11.13980 -10.97765 -10.92891 -10.74492 -10.58645 -10.39871 -9.92812 -9.91760 -9.54151 -9.20172 -9.12484 -8.62212 -8.33207 -7.02991 -5.93552 -3.92349 0.65779 1.09639 2.76488 3.21393 3.34609 3.42054 3.47101 3.66860 4.13743 4.49720 4.61102 4.76413 4.88950 5.06333 5.28785 5.41229 5.42289 5.51554 5.55268 5.67742 5.84502 5.85050 5.89853 5.96061 6.06748 6.10273 6.20401 6.34482 6.41850 6.51601 6.53745 6.71005 6.77441 6.85867 6.96611 7.46512 7.51853 7.91109 8.21916 8.29432 8.34983 8.67012 9.15191 9.70264 11.17224 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.016506 B = 0.005095 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.902344 B = 5493.928136 C = 6561.104408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.165 4.165 3 C 0.062 3.938 4 N -0.512 5.512 5 C 0.197 3.803 6 C -0.492 4.492 7 H 0.059 0.941 8 C 0.054 3.946 9 N -0.901 5.901 10 Si 0.892 3.108 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.286 1.286 14 C 0.083 3.917 15 C -0.011 4.011 16 C -0.100 4.100 17 C -0.123 4.123 18 C 0.074 3.926 19 F -0.141 7.141 20 C -0.103 4.103 21 C -0.072 4.072 22 C 0.503 3.497 23 O -0.440 6.440 24 O -0.527 6.527 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.030 0.970 33 H -0.001 1.001 34 H 0.258 0.742 35 H 0.036 0.964 36 H 0.092 0.908 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.146 0.854 40 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.694 3.415 16.594 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.204 4.204 3 C -0.067 4.067 4 N -0.234 5.234 5 C 0.072 3.928 6 C -0.531 4.531 7 H 0.078 0.922 8 C -0.147 4.147 9 N -0.542 5.542 10 Si 0.721 3.279 11 H -0.198 1.198 12 H -0.212 1.212 13 H -0.213 1.213 14 C -0.044 4.044 15 C -0.012 4.012 16 C -0.118 4.118 17 C -0.142 4.142 18 C 0.055 3.945 19 F -0.120 7.120 20 C -0.122 4.122 21 C -0.074 4.074 22 C 0.344 3.656 23 O -0.323 6.323 24 O -0.340 6.340 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.048 0.952 33 H 0.017 0.983 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.110 0.890 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.164 0.836 40 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -1.722 3.537 16.450 16.914 hybrid contribution -0.158 0.021 -1.088 1.099 sum -1.880 3.558 15.362 15.880 Atomic orbital electron populations 1.21649 0.96522 1.00615 1.01222 1.22199 0.95551 1.00530 1.02086 1.22119 0.89248 0.94356 1.00947 1.62294 1.05013 1.54326 1.01765 1.19735 0.95819 0.92923 0.84288 1.21152 1.39327 1.02700 0.89902 0.92235 1.24939 0.95772 0.95141 0.98813 1.69967 1.44543 1.18718 1.20941 0.86529 0.77975 0.80711 0.82702 1.19826 1.21184 1.21276 1.21183 1.01862 0.92844 0.88554 1.20280 0.91939 0.93347 0.95671 1.20924 0.97696 1.00317 0.92893 1.21313 0.99807 0.93898 0.99136 1.17485 0.99418 0.91952 0.85668 1.91498 1.94469 1.74409 1.51596 1.21379 0.97464 1.00665 0.92713 1.18695 0.98046 0.96598 0.94065 1.20628 0.80442 0.78528 0.86032 1.91138 1.66334 1.50029 1.24766 1.84485 1.48290 1.49077 1.52176 0.92700 0.93672 0.93604 0.90369 0.93249 0.93354 0.90242 0.95173 0.98287 0.93225 0.94604 0.88952 0.84330 0.84453 0.83575 0.72941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.91 37.16 0.37 -1.69 16 2 C -0.16 -2.83 5.30 -26.73 -0.14 -2.97 16 3 C 0.06 1.17 5.04 -3.82 -0.02 1.15 16 4 N -0.51 -10.79 3.37 -237.51 -0.80 -11.59 16 5 C 0.20 5.08 4.23 -4.98 -0.02 5.06 16 6 C -0.49 -13.89 8.44 -34.44 -0.29 -14.18 16 7 H 0.06 1.70 7.49 -52.49 -0.39 1.31 16 8 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 10 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 11 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 C 0.08 1.48 3.95 -4.97 -0.02 1.46 16 15 C -0.01 -0.16 4.61 -104.21 -0.48 -0.65 16 16 C -0.10 -1.20 9.09 -39.65 -0.36 -1.56 16 17 C -0.12 -1.33 10.02 -39.42 -0.39 -1.72 16 18 C 0.07 0.89 7.29 -39.48 -0.29 0.60 16 19 F -0.14 -1.69 17.26 2.25 0.04 -1.65 16 20 C -0.10 -1.30 9.59 -39.10 -0.38 -1.68 16 21 C -0.07 -1.07 5.87 -104.99 -0.62 -1.68 16 22 C 0.50 8.07 8.21 34.61 0.28 8.36 16 23 O -0.44 -8.83 12.80 -19.24 -0.25 -9.08 16 24 O -0.53 -6.56 12.70 -40.51 -0.51 -7.08 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 1.61 6.09 -51.93 -0.32 1.29 16 29 H 0.05 0.76 6.43 -51.93 -0.33 0.43 16 30 H 0.05 0.82 6.89 -51.93 -0.36 0.46 16 31 H 0.08 1.69 7.13 -51.93 -0.37 1.31 16 32 H 0.03 0.86 7.61 -51.93 -0.40 0.47 16 33 H 0.00 -0.01 5.86 -51.93 -0.30 -0.32 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 35 H 0.04 0.60 5.80 -51.93 -0.30 0.30 16 36 H 0.09 1.78 6.19 -51.93 -0.32 1.46 16 37 H 0.14 1.43 8.00 -52.49 -0.42 1.01 16 38 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.15 1.65 7.63 -52.49 -0.40 1.25 16 40 H 0.41 3.58 9.11 45.56 0.42 4.00 16 LS Contribution 332.31 15.07 5.01 5.01 Total: -1.00 -32.15 332.31 -7.57 -39.73 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.32 Total: 1.95 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -2.45 Total: -8.05 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: -0.06 Total: -37.81 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.76 Total: -16.16 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.15 -7.57 -39.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238235019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.745 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds