Wall clock time and date at job start Tue Mar 31 2020 08:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46722 * 2 1 4 4 N 1.46904 * 109.46963 * 183.40419 * 3 2 1 5 5 C 1.46902 * 111.00126 * 61.36612 * 4 3 2 6 6 C 1.50698 * 109.47211 * 68.91451 * 5 4 3 7 7 H 1.08001 * 119.99942 * 5.02255 * 6 5 4 8 8 C 1.37878 * 119.99891 * 185.01900 * 6 5 4 9 9 N 1.31512 * 119.99894 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99732 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47587 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47172 * 119.99953 * 10 8 6 13 13 H 1.48506 * 109.46863 * 239.99701 * 10 8 6 14 14 C 1.46903 * 110.99872 * 297.41258 * 4 3 2 15 15 C 1.50704 * 109.46721 * 290.08121 * 14 4 3 16 16 C 1.37976 * 120.05059 * 105.15809 * 15 14 4 17 17 C 1.38307 * 120.17822 * 179.74482 * 16 15 14 18 18 C 1.38597 * 120.27577 * 0.55204 * 17 16 15 19 19 F 1.35105 * 119.95037 * 179.72918 * 18 17 16 20 20 C 1.38155 * 120.10141 * 359.69745 * 18 17 16 21 21 C 1.39606 * 120.04993 * 285.42573 * 15 14 4 22 22 C 1.47735 * 120.13651 * 0.02562 * 21 15 14 23 23 O 1.21467 * 120.00114 * 5.95853 * 22 21 15 24 24 O 1.34707 * 119.99763 * 185.95938 * 22 21 15 25 25 H 1.08992 * 109.47194 * 60.00041 * 1 2 3 26 26 H 1.09004 * 109.46800 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46809 * 299.99309 * 1 2 3 28 28 H 1.09001 * 109.46809 * 240.00690 * 2 1 3 29 29 H 1.08996 * 109.47636 * 120.00181 * 2 1 3 30 30 H 1.08992 * 109.47094 * 63.40461 * 3 2 1 31 31 H 1.09002 * 109.46961 * 303.40187 * 3 2 1 32 32 H 1.08994 * 109.47091 * 188.91768 * 5 4 3 33 33 H 1.09005 * 109.46964 * 308.91465 * 5 4 3 34 34 H 0.97004 * 119.99666 * 179.97438 * 9 8 6 35 35 H 1.08995 * 109.46943 * 50.07632 * 14 4 3 36 36 H 1.08998 * 109.46851 * 170.08274 * 14 4 3 37 37 H 1.08001 * 119.90526 * 0.02562 * 16 15 14 38 38 H 1.08000 * 119.86151 * 180.25392 * 17 16 15 39 39 H 1.07999 * 120.09049 * 180.02562 * 20 18 17 40 40 H 0.96703 * 116.99997 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5067 1.4434 -0.0822 5 6 3.9646 0.8105 -1.3263 6 6 3.6007 1.6850 -2.4984 7 1 3.1545 2.6542 -2.3310 8 6 3.8375 1.2479 -3.7844 9 7 4.3814 0.0680 -3.9882 10 14 3.3872 2.3323 -5.2372 11 1 2.7947 3.6011 -4.7430 12 1 4.6074 2.6307 -6.0293 13 1 2.4008 1.6268 -6.0944 14 6 4.1001 0.7883 1.0911 15 6 3.8919 1.6528 2.3079 16 6 2.9451 1.3045 3.2491 17 6 2.7555 2.0931 4.3694 18 6 3.5064 3.2441 4.5489 19 9 3.3119 4.0125 5.6430 20 6 4.4540 3.6065 3.6111 21 6 4.6528 2.8104 2.4815 22 6 5.6635 3.1918 1.4737 23 8 5.7596 2.5600 0.4408 24 8 6.4784 4.2402 1.7005 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8933 -0.5137 -0.8901 29 1 1.8935 -0.5138 0.8899 30 1 1.7273 1.9384 0.9189 31 1 1.6276 1.9736 -0.8579 32 1 5.0463 0.6812 -1.2914 33 1 3.4858 -0.1626 -1.4365 34 1 4.5476 -0.2397 -4.8930 35 1 3.6231 -0.1792 1.2470 36 1 5.1679 0.6448 0.9258 37 1 2.3537 0.4111 3.1129 38 1 2.0158 1.8134 5.1050 39 1 5.0393 4.5032 3.7514 40 1 7.1239 4.4513 1.0121 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238235019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:15 Heat of formation + Delta-G solvation = -121.013111 kcal Electronic energy + Delta-G solvation = -24417.123978 eV Core-core repulsion = 20724.804139 eV Total energy + Delta-G solvation = -3692.319840 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.89399 -41.52937 -39.79135 -38.53666 -36.88725 -34.81674 -33.72256 -32.55063 -32.10228 -28.98506 -27.50650 -26.06568 -25.11885 -23.65386 -23.37868 -22.04526 -20.73270 -19.19006 -18.49977 -18.33181 -17.48697 -16.98687 -16.76705 -16.64131 -16.51590 -16.35235 -16.06794 -15.84641 -15.14565 -14.90856 -14.54445 -14.36823 -14.18748 -14.02488 -13.36196 -13.22020 -13.14236 -12.83743 -12.70584 -12.55600 -12.49228 -12.41327 -12.27250 -12.22934 -12.17123 -11.75125 -11.34671 -11.22376 -11.00572 -10.54551 -10.18307 -9.68047 -8.71957 -8.13835 -6.21668 -0.37843 0.09936 1.37881 1.38774 1.51885 1.63882 2.14512 2.41434 2.59192 3.17226 3.17826 3.50711 3.68101 3.77901 3.93995 4.11952 4.17268 4.23703 4.41175 4.53866 4.54727 4.68280 4.71557 4.82887 4.90380 4.93682 5.00072 5.09443 5.11166 5.18022 5.22637 5.39620 5.47639 5.51869 5.57618 5.71839 5.76147 5.78265 6.17948 6.52256 6.77879 6.95286 7.15829 7.46299 8.96278 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.016506 B = 0.005095 C = 0.004267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.902344 B = 5493.928136 C = 6561.104408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.157 4.157 3 C 0.066 3.934 4 N -0.520 5.520 5 C 0.220 3.780 6 C -0.505 4.505 7 H 0.051 0.949 8 C 0.001 3.999 9 N -0.936 5.936 10 Si 0.961 3.039 11 H -0.267 1.267 12 H -0.281 1.281 13 H -0.277 1.277 14 C 0.091 3.909 15 C -0.028 4.028 16 C -0.092 4.092 17 C -0.103 4.103 18 C 0.076 3.924 19 F -0.138 7.138 20 C -0.098 4.098 21 C -0.092 4.092 22 C 0.506 3.494 23 O -0.494 6.494 24 O -0.514 6.514 25 H 0.041 0.959 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.050 0.950 32 H -0.010 1.010 33 H -0.022 1.022 34 H 0.261 0.739 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.162 0.838 38 H 0.174 0.826 39 H 0.157 0.843 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.628 4.330 18.867 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.196 4.196 3 C -0.062 4.062 4 N -0.243 5.243 5 C 0.094 3.906 6 C -0.543 4.543 7 H 0.069 0.931 8 C -0.196 4.196 9 N -0.577 5.577 10 Si 0.786 3.214 11 H -0.192 1.192 12 H -0.207 1.207 13 H -0.202 1.202 14 C -0.037 4.037 15 C -0.029 4.029 16 C -0.111 4.111 17 C -0.121 4.121 18 C 0.057 3.943 19 F -0.117 7.117 20 C -0.117 4.117 21 C -0.094 4.094 22 C 0.348 3.652 23 O -0.381 6.381 24 O -0.329 6.329 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.092 0.908 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.008 0.992 33 H -0.004 1.004 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.180 0.820 38 H 0.192 0.808 39 H 0.175 0.825 40 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -3.651 4.484 18.758 19.629 hybrid contribution 0.494 -0.210 -1.646 1.731 sum -3.157 4.274 17.113 17.919 Atomic orbital electron populations 1.21605 0.93951 1.01846 1.01972 1.22077 0.97747 0.98795 1.00941 1.22083 0.87683 0.95508 1.00897 1.62095 1.06582 1.54462 1.01116 1.19243 0.93055 0.91928 0.86420 1.21400 1.39154 1.02564 0.91199 0.93091 1.25798 0.95573 0.96480 1.01726 1.70093 1.45519 1.20402 1.21717 0.85461 0.77889 0.78994 0.79023 1.19172 1.20674 1.20247 1.21027 1.00164 0.93935 0.88556 1.20084 0.93924 0.93486 0.95383 1.21113 0.96635 1.01059 0.92249 1.21636 0.99276 0.92398 0.98821 1.17583 0.99118 0.92269 0.85350 1.91516 1.94380 1.74437 1.51358 1.21421 0.97717 1.00589 0.92007 1.18707 0.98451 0.97461 0.94768 1.21017 0.80421 0.78156 0.85557 1.91138 1.68066 1.51892 1.27006 1.84449 1.48151 1.47626 1.52659 0.93946 0.92228 0.90831 0.94726 0.91120 0.90525 0.93190 0.99157 1.00405 0.92996 0.93527 0.91611 0.82045 0.80834 0.82500 0.71160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 9.91 71.98 0.71 -2.93 16 2 C -0.16 -5.31 5.30 30.60 0.16 -5.15 16 3 C 0.07 2.52 5.04 86.30 0.43 2.95 16 4 N -0.52 -22.80 3.37 -905.36 -3.05 -25.85 16 5 C 0.22 12.08 4.23 85.56 0.36 12.44 16 6 C -0.50 -29.78 8.44 25.60 0.22 -29.57 16 7 H 0.05 3.03 7.49 -2.91 -0.02 3.01 16 8 C 0.00 0.08 5.46 84.66 0.46 0.54 16 9 N -0.94 -58.06 13.29 21.45 0.28 -57.78 16 10 Si 0.96 46.13 29.54 68.60 2.03 48.15 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 14 C 0.09 3.30 3.95 85.56 0.34 3.64 16 15 C -0.03 -0.79 4.61 -19.59 -0.09 -0.88 16 16 C -0.09 -1.88 9.09 22.22 0.20 -1.68 16 17 C -0.10 -1.74 10.02 22.37 0.22 -1.52 16 18 C 0.08 1.54 7.29 22.34 0.16 1.71 16 19 F -0.14 -2.80 17.26 44.97 0.78 -2.02 16 20 C -0.10 -2.27 9.59 22.58 0.22 -2.05 16 21 C -0.09 -2.65 5.87 -20.10 -0.12 -2.77 16 22 C 0.51 16.61 8.21 70.33 0.58 17.19 16 23 O -0.49 -21.09 12.80 19.94 0.26 -20.83 16 24 O -0.51 -12.71 12.70 -56.17 -0.71 -13.42 16 25 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.06 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.03 1.48 6.09 -2.39 -0.01 1.46 16 29 H 0.07 2.07 6.43 -2.39 -0.02 2.05 16 30 H 0.08 2.46 6.89 -2.39 -0.02 2.44 16 31 H 0.05 2.17 7.13 -2.39 -0.02 2.15 16 32 H -0.01 -0.60 7.61 -2.39 -0.02 -0.62 16 33 H -0.02 -1.25 5.86 -2.38 -0.01 -1.27 16 34 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 35 H 0.05 1.55 5.80 -2.39 -0.01 1.54 16 36 H 0.07 2.73 6.19 -2.39 -0.01 2.72 16 37 H 0.16 2.56 8.00 -2.91 -0.02 2.54 16 38 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 39 H 0.16 3.19 7.63 -2.91 -0.02 3.17 16 40 H 0.43 7.46 9.11 -74.06 -0.67 6.78 16 Total: -1.00 -73.66 332.31 3.85 -69.82 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: 0.40 Total: 10.02 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 3.86 Total: -8.09 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -2.77 Total: -83.63 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.46 Total: -34.25 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.78 Total: -2.02 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -73.66 3.85 -69.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238235019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.197 kcal (2) G-P(sol) polarization free energy of solvation -73.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds