Wall clock time and date at job start Tue Mar 31 2020 07:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47184 * 2 1 4 4 C 1.52999 * 109.47184 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47276 * 179.97438 * 4 3 2 6 6 C 1.36932 * 120.00330 * 274.39907 * 5 4 3 7 7 H 1.08001 * 119.99826 * 134.24924 * 6 5 4 8 8 C 1.38812 * 119.99919 * 314.24789 * 6 5 4 9 9 N 1.31617 * 120.00115 * 2.46536 * 8 6 5 10 10 Si 1.86794 * 119.99895 * 182.47042 * 8 6 5 11 11 H 1.48504 * 109.47489 * 89.99594 * 10 8 6 12 12 H 1.48498 * 109.47199 * 209.99711 * 10 8 6 13 13 H 1.48500 * 109.47209 * 329.99779 * 10 8 6 14 14 C 1.46506 * 119.99476 * 94.39631 * 5 4 3 15 15 C 1.50699 * 109.47138 * 84.83359 * 14 5 4 16 16 C 1.37980 * 120.05063 * 263.27227 * 15 14 5 17 17 C 1.38310 * 120.17733 * 179.74558 * 16 15 14 18 18 C 1.38593 * 120.27717 * 0.55022 * 17 16 15 19 19 F 1.35100 * 119.95150 * 179.72306 * 18 17 16 20 20 C 1.38157 * 120.10176 * 359.70670 * 18 17 16 21 21 C 1.39602 * 120.05001 * 83.54180 * 15 14 5 22 22 C 1.47737 * 120.14132 * 0.02562 * 21 15 14 23 23 O 1.21467 * 119.99331 * 5.91140 * 22 21 15 24 24 O 1.34702 * 120.00249 * 185.91547 * 22 21 15 25 25 H 1.09002 * 109.47490 * 59.99260 * 1 2 3 26 26 H 1.09000 * 109.47218 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46771 * 299.99302 * 1 2 3 28 28 H 1.09006 * 109.46771 * 240.00698 * 2 1 3 29 29 H 1.08994 * 109.47163 * 120.00804 * 2 1 3 30 30 H 1.09006 * 109.46696 * 60.00652 * 3 2 1 31 31 H 1.09002 * 109.47511 * 300.00727 * 3 2 1 32 32 H 1.09006 * 109.46771 * 60.00698 * 4 3 2 33 33 H 1.09002 * 109.47490 * 300.00739 * 4 3 2 34 34 H 0.96998 * 120.00150 * 180.02562 * 9 8 6 35 35 H 1.08995 * 109.46850 * 204.83019 * 14 5 4 36 36 H 1.09004 * 109.47150 * 324.83301 * 14 5 4 37 37 H 1.07999 * 119.91062 * 0.02570 * 16 15 14 38 38 H 1.08003 * 119.85983 * 180.25816 * 17 16 15 39 39 H 1.08000 * 120.09489 * 180.02562 * 20 18 17 40 40 H 0.96701 * 116.99798 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2014 3.4989 -1.1827 7 1 3.8398 4.5126 -1.2729 8 6 4.8111 2.8805 -2.2656 9 7 5.2080 1.6291 -2.1711 10 14 5.0683 3.8242 -3.8569 11 1 6.3872 4.5057 -3.8207 12 1 5.0297 2.8813 -5.0034 13 1 3.9925 4.8361 -4.0117 14 6 4.3937 3.4826 1.2649 15 6 5.8065 3.1320 1.6548 16 6 6.0429 2.1057 2.5463 17 6 7.3388 1.7784 2.9019 18 6 8.4079 2.4854 2.3747 19 9 9.6707 2.1637 2.7309 20 6 8.1842 3.5186 1.4852 21 6 6.8779 3.8488 1.1189 22 6 6.6307 4.9529 0.1689 23 8 5.4933 5.3094 -0.0651 24 8 7.6664 5.5642 -0.4378 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.9337 0.9286 -0.8892 33 1 3.9330 0.9287 0.8908 34 1 5.6344 1.1971 -2.9276 35 1 4.3069 4.5625 1.1461 36 1 3.7080 3.1463 2.0427 37 1 5.2140 1.5537 2.9640 38 1 7.5181 0.9714 3.5969 39 1 9.0174 4.0692 1.0742 40 1 7.4549 6.2809 -1.0514 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238237792.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:05 Heat of formation + Delta-G solvation = -94.503783 kcal Electronic energy + Delta-G solvation = -24699.701061 eV Core-core repulsion = 21008.530752 eV Total energy + Delta-G solvation = -3691.170309 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.55889 -39.89799 -38.02952 -36.16973 -35.32486 -33.72122 -31.81740 -31.08940 -30.06507 -27.93003 -25.65394 -24.15573 -23.65738 -21.89241 -21.10037 -20.43254 -19.68959 -17.76781 -17.22170 -16.57129 -15.83964 -15.47748 -15.39916 -15.14747 -14.86530 -14.59344 -14.36469 -13.69012 -13.53968 -13.43569 -13.11857 -12.88024 -12.67564 -12.16102 -11.94754 -11.68068 -11.60301 -11.26572 -11.12295 -10.93462 -10.87657 -10.76218 -10.52954 -10.40181 -10.23620 -9.93945 -9.83270 -9.41631 -9.13086 -8.74383 -8.44993 -8.13194 -6.44816 -5.66229 -3.40451 1.13038 1.59498 3.16356 3.33008 3.41454 3.43674 3.60169 4.16192 4.49787 4.58514 5.06745 5.16476 5.36736 5.42318 5.55752 5.56819 5.62008 5.77565 5.85169 5.88218 6.08130 6.20330 6.30411 6.32339 6.37233 6.42139 6.50508 6.58333 6.59030 6.69568 6.73844 6.98764 6.99857 7.03951 7.19821 7.35048 7.39028 7.82855 8.07980 8.61619 8.72424 9.30013 9.81776 10.42721 11.24129 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.007052 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.344951 B = 3969.442155 C = 5419.155023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.129 4.129 4 C 0.131 3.869 5 N -0.568 5.568 6 C -0.221 4.221 7 H 0.070 0.930 8 C 0.009 3.991 9 N -0.893 5.893 10 Si 0.891 3.109 11 H -0.288 1.288 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.155 3.845 15 C -0.021 4.021 16 C -0.106 4.106 17 C -0.122 4.122 18 C 0.058 3.942 19 F -0.147 7.147 20 C -0.102 4.102 21 C -0.078 4.078 22 C 0.514 3.486 23 O -0.455 6.455 24 O -0.526 6.526 25 H 0.050 0.950 26 H 0.043 0.957 27 H 0.047 0.953 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.114 0.886 33 H 0.016 0.984 34 H 0.253 0.747 35 H 0.094 0.906 36 H 0.039 0.961 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.185 1.242 8.094 8.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.169 4.169 4 C 0.006 3.994 5 N -0.286 5.286 6 C -0.352 4.352 7 H 0.088 0.912 8 C -0.189 4.189 9 N -0.537 5.537 10 Si 0.721 3.279 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.203 1.203 14 C 0.029 3.971 15 C -0.026 4.026 16 C -0.125 4.125 17 C -0.141 4.141 18 C 0.038 3.962 19 F -0.126 7.126 20 C -0.121 4.121 21 C -0.080 4.080 22 C 0.357 3.643 23 O -0.340 6.340 24 O -0.339 6.339 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.131 0.869 33 H 0.034 0.966 34 H 0.064 0.936 35 H 0.112 0.888 36 H 0.057 0.943 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.157 0.843 40 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 1.015 0.905 8.143 8.255 hybrid contribution 0.560 0.550 -1.362 1.572 sum 1.575 1.454 6.781 7.112 Atomic orbital electron populations 1.21770 0.97151 1.00325 1.01279 1.21462 0.94485 0.98734 1.01170 1.22100 1.00366 0.93949 1.00476 1.21382 0.89402 0.86416 1.02206 1.43874 1.72023 1.11836 1.00830 1.19183 1.30386 0.97821 0.87799 0.91221 1.25553 0.97737 0.96344 0.99312 1.69598 1.42793 1.10614 1.30687 0.86454 0.78278 0.79652 0.83550 1.21459 1.21780 1.20270 1.20638 0.86588 1.00484 0.89406 1.21444 0.99182 0.91954 0.89975 1.20822 0.95765 0.97563 0.98336 1.21242 0.92277 0.99778 1.00793 1.17379 0.79020 0.98863 1.00919 1.91452 1.37843 1.92347 1.90990 1.21291 0.97567 0.96601 0.96675 1.18579 0.92867 0.97278 0.99251 1.20623 0.82330 0.81938 0.79447 1.90903 1.21972 1.61934 1.59149 1.84505 1.40541 1.50823 1.58021 0.93099 0.93786 0.93390 0.92320 0.93125 0.94486 0.92456 0.86856 0.96568 0.93599 0.88799 0.94302 0.84987 0.85150 0.84329 0.73671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.12 -2.01 5.93 -26.73 -0.16 -2.16 16 3 C -0.13 -2.55 5.52 -26.73 -0.15 -2.70 16 4 C 0.13 2.97 5.37 -4.04 -0.02 2.94 16 5 N -0.57 -13.47 2.42 -174.60 -0.42 -13.90 16 6 C -0.22 -5.80 6.95 -15.06 -0.10 -5.91 16 7 H 0.07 1.92 6.85 -52.49 -0.36 1.56 16 8 C 0.01 0.25 5.39 -17.43 -0.09 0.15 16 9 N -0.89 -24.93 10.77 55.49 0.60 -24.33 16 10 Si 0.89 21.58 29.55 -169.99 -5.02 16.56 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 C 0.15 3.19 5.31 -5.19 -0.03 3.16 16 15 C -0.02 -0.40 5.49 -104.21 -0.57 -0.98 16 16 C -0.11 -1.76 9.66 -39.65 -0.38 -2.14 16 17 C -0.12 -1.88 10.02 -39.42 -0.39 -2.28 16 18 C 0.06 0.96 7.29 -39.48 -0.29 0.67 16 19 F -0.15 -2.37 17.26 2.25 0.04 -2.34 16 20 C -0.10 -1.79 9.59 -39.09 -0.38 -2.17 16 21 C -0.08 -1.51 5.87 -104.99 -0.62 -2.13 16 22 C 0.51 10.23 7.97 34.61 0.28 10.50 16 23 O -0.45 -9.93 10.63 -19.24 -0.20 -10.13 16 24 O -0.53 -8.78 12.70 -40.50 -0.51 -9.30 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.11 2.96 5.17 -51.93 -0.27 2.69 16 33 H 0.02 0.34 8.04 -51.93 -0.42 -0.08 16 34 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.09 2.02 5.43 -51.93 -0.28 1.73 16 36 H 0.04 0.72 8.01 -51.93 -0.42 0.30 16 37 H 0.13 1.92 8.05 -52.49 -0.42 1.49 16 38 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 39 H 0.14 2.22 7.63 -52.49 -0.40 1.82 16 40 H 0.41 5.06 9.11 45.56 0.42 5.48 16 LS Contribution 336.57 15.07 5.07 5.07 Total: -1.00 -29.42 336.57 -7.66 -37.08 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -4.67 Total: 6.04 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -2.54 Total: -4.75 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.18 Total: -38.23 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.72 Total: -19.43 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.42 -7.66 -37.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238237792.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.423 kcal (2) G-P(sol) polarization free energy of solvation -29.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds