Wall clock time and date at job start Tue Mar 31 2020 07:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47184 * 2 1 4 4 C 1.52999 * 109.47184 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47276 * 179.97438 * 4 3 2 6 6 C 1.36932 * 120.00330 * 274.39907 * 5 4 3 7 7 H 1.08001 * 119.99826 * 134.24924 * 6 5 4 8 8 C 1.38812 * 119.99919 * 314.24789 * 6 5 4 9 9 N 1.31617 * 120.00115 * 2.46536 * 8 6 5 10 10 Si 1.86794 * 119.99895 * 182.47042 * 8 6 5 11 11 H 1.48504 * 109.47489 * 89.99594 * 10 8 6 12 12 H 1.48498 * 109.47199 * 209.99711 * 10 8 6 13 13 H 1.48500 * 109.47209 * 329.99779 * 10 8 6 14 14 C 1.46506 * 119.99476 * 94.39631 * 5 4 3 15 15 C 1.50699 * 109.47138 * 84.83359 * 14 5 4 16 16 C 1.37980 * 120.05063 * 263.27227 * 15 14 5 17 17 C 1.38310 * 120.17733 * 179.74558 * 16 15 14 18 18 C 1.38593 * 120.27717 * 0.55022 * 17 16 15 19 19 F 1.35100 * 119.95150 * 179.72306 * 18 17 16 20 20 C 1.38157 * 120.10176 * 359.70670 * 18 17 16 21 21 C 1.39602 * 120.05001 * 83.54180 * 15 14 5 22 22 C 1.47737 * 120.14132 * 0.02562 * 21 15 14 23 23 O 1.21467 * 119.99331 * 5.91140 * 22 21 15 24 24 O 1.34702 * 120.00249 * 185.91547 * 22 21 15 25 25 H 1.09002 * 109.47490 * 59.99260 * 1 2 3 26 26 H 1.09000 * 109.47218 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46771 * 299.99302 * 1 2 3 28 28 H 1.09006 * 109.46771 * 240.00698 * 2 1 3 29 29 H 1.08994 * 109.47163 * 120.00804 * 2 1 3 30 30 H 1.09006 * 109.46696 * 60.00652 * 3 2 1 31 31 H 1.09002 * 109.47511 * 300.00727 * 3 2 1 32 32 H 1.09006 * 109.46771 * 60.00698 * 4 3 2 33 33 H 1.09002 * 109.47490 * 300.00739 * 4 3 2 34 34 H 0.96998 * 120.00150 * 180.02562 * 9 8 6 35 35 H 1.08995 * 109.46850 * 204.83019 * 14 5 4 36 36 H 1.09004 * 109.47150 * 324.83301 * 14 5 4 37 37 H 1.07999 * 119.91062 * 0.02570 * 16 15 14 38 38 H 1.08003 * 119.85983 * 180.25816 * 17 16 15 39 39 H 1.08000 * 120.09489 * 180.02562 * 20 18 17 40 40 H 0.96701 * 116.99798 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.2014 3.4989 -1.1827 7 1 3.8398 4.5126 -1.2729 8 6 4.8111 2.8805 -2.2656 9 7 5.2080 1.6291 -2.1711 10 14 5.0683 3.8242 -3.8569 11 1 6.3872 4.5057 -3.8207 12 1 5.0297 2.8813 -5.0034 13 1 3.9925 4.8361 -4.0117 14 6 4.3937 3.4826 1.2649 15 6 5.8065 3.1320 1.6548 16 6 6.0429 2.1057 2.5463 17 6 7.3388 1.7784 2.9019 18 6 8.4079 2.4854 2.3747 19 9 9.6707 2.1637 2.7309 20 6 8.1842 3.5186 1.4852 21 6 6.8779 3.8488 1.1189 22 6 6.6307 4.9529 0.1689 23 8 5.4933 5.3094 -0.0651 24 8 7.6664 5.5642 -0.4378 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.9337 0.9286 -0.8892 33 1 3.9330 0.9287 0.8908 34 1 5.6344 1.1971 -2.9276 35 1 4.3069 4.5625 1.1461 36 1 3.7080 3.1463 2.0427 37 1 5.2140 1.5537 2.9640 38 1 7.5181 0.9714 3.5969 39 1 9.0174 4.0692 1.0742 40 1 7.4549 6.2809 -1.0514 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238237792.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:04 Heat of formation + Delta-G solvation = -110.111960 kcal Electronic energy + Delta-G solvation = -24700.377882 eV Core-core repulsion = 21008.530752 eV Total energy + Delta-G solvation = -3691.847130 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.86055 -41.37048 -39.44927 -37.82978 -36.82170 -35.22203 -33.61292 -32.44303 -31.63768 -29.46656 -27.34918 -25.73452 -25.14199 -23.30595 -22.66572 -21.85832 -21.30424 -19.17202 -18.84346 -18.25075 -17.24776 -17.12130 -16.77237 -16.54806 -16.29934 -16.12574 -16.02108 -15.31460 -15.22092 -14.87273 -14.44207 -14.28219 -14.11710 -13.65695 -13.45636 -13.15957 -13.06043 -12.93074 -12.82127 -12.63600 -12.38457 -12.33260 -12.10863 -12.01139 -11.73329 -11.64184 -11.48395 -11.13925 -10.71481 -10.43332 -10.07884 -9.54813 -8.35386 -7.62494 -5.41950 -0.25216 0.23307 1.37843 1.41964 1.49152 1.71708 2.23357 2.51337 2.75382 3.25560 3.39579 3.75731 3.88141 3.94872 4.08020 4.26437 4.26932 4.44258 4.51662 4.55740 4.69635 4.75412 4.88137 4.98975 5.04412 5.06231 5.13114 5.15194 5.19783 5.23405 5.25488 5.43283 5.55959 5.64420 5.72902 5.76306 5.86416 5.92329 6.17376 6.70749 7.20905 7.34518 7.95337 8.48655 9.21734 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011840 B = 0.007052 C = 0.005166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.344951 B = 3969.442155 C = 5419.155023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.118 4.118 4 C 0.133 3.867 5 N -0.583 5.583 6 C -0.208 4.208 7 H 0.051 0.949 8 C -0.034 4.034 9 N -0.917 5.917 10 Si 0.932 3.068 11 H -0.285 1.285 12 H -0.296 1.296 13 H -0.277 1.277 14 C 0.158 3.842 15 C -0.040 4.040 16 C -0.102 4.102 17 C -0.109 4.109 18 C 0.059 3.941 19 F -0.142 7.142 20 C -0.107 4.107 21 C -0.102 4.102 22 C 0.511 3.489 23 O -0.484 6.484 24 O -0.520 6.520 25 H 0.043 0.957 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.027 0.973 32 H 0.081 0.919 33 H 0.028 0.972 34 H 0.245 0.755 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.157 0.843 38 H 0.168 0.832 39 H 0.148 0.852 40 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 0.335 9.932 10.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.157 4.157 4 C 0.008 3.992 5 N -0.302 5.302 6 C -0.340 4.340 7 H 0.069 0.931 8 C -0.229 4.229 9 N -0.563 5.563 10 Si 0.762 3.238 11 H -0.212 1.212 12 H -0.223 1.223 13 H -0.202 1.202 14 C 0.033 3.967 15 C -0.044 4.044 16 C -0.121 4.121 17 C -0.128 4.128 18 C 0.040 3.960 19 F -0.121 7.121 20 C -0.126 4.126 21 C -0.104 4.104 22 C 0.354 3.646 23 O -0.372 6.372 24 O -0.334 6.334 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.098 0.902 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.175 0.825 38 H 0.186 0.814 39 H 0.166 0.834 40 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 1.238 0.027 9.996 10.073 hybrid contribution 0.570 0.892 -1.791 2.080 sum 1.809 0.919 8.205 8.452 Atomic orbital electron populations 1.21720 0.95003 1.01818 1.01484 1.21408 0.96348 0.96366 1.01238 1.21931 0.98442 0.95939 0.99409 1.21249 0.91003 0.85845 1.01093 1.43943 1.73157 1.11997 1.01119 1.19038 1.29037 0.96781 0.89094 0.93150 1.25950 0.98640 0.96968 1.01370 1.69771 1.44454 1.11388 1.30684 0.85793 0.78137 0.78632 0.81243 1.21183 1.22299 1.20233 1.20526 0.88172 0.99493 0.88504 1.21388 0.98144 0.93261 0.91645 1.21094 0.97228 0.96429 0.97308 1.21604 0.91176 0.99799 1.00211 1.17520 0.79601 0.98479 1.00408 1.91472 1.37600 1.92212 1.90835 1.21393 0.97110 0.97138 0.96954 1.18757 0.93872 0.97834 0.99909 1.20887 0.82333 0.81954 0.79390 1.90889 1.23037 1.62978 1.60294 1.84461 1.39480 1.51318 1.58157 0.93805 0.91660 0.92311 0.93749 0.91546 0.93492 0.95397 0.90167 0.95320 0.94503 0.90245 0.92148 0.82526 0.81445 0.83378 0.71698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.91 71.98 0.71 -3.03 16 2 C -0.12 -3.69 5.93 30.59 0.18 -3.51 16 3 C -0.12 -4.59 5.52 30.59 0.17 -4.42 16 4 C 0.13 6.01 5.37 86.38 0.46 6.47 16 5 N -0.58 -27.83 2.42 -706.31 -1.71 -29.53 16 6 C -0.21 -11.14 6.95 84.03 0.58 -10.56 16 7 H 0.05 2.87 6.85 -2.91 -0.02 2.85 16 8 C -0.03 -1.85 5.39 84.86 0.46 -1.40 16 9 N -0.92 -52.34 10.77 21.65 0.23 -52.10 16 10 Si 0.93 45.19 29.55 68.60 2.03 47.22 16 11 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 12 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 13 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 14 C 0.16 6.44 5.31 85.63 0.45 6.90 16 15 C -0.04 -1.51 5.49 -19.60 -0.11 -1.62 16 16 C -0.10 -3.08 9.66 22.23 0.21 -2.87 16 17 C -0.11 -2.97 10.02 22.37 0.22 -2.75 16 18 C 0.06 1.81 7.29 22.34 0.16 1.98 16 19 F -0.14 -4.17 17.26 44.97 0.78 -3.39 16 20 C -0.11 -3.59 9.59 22.59 0.22 -3.37 16 21 C -0.10 -3.90 5.87 -20.10 -0.12 -4.01 16 22 C 0.51 20.41 7.97 70.33 0.56 20.97 16 23 O -0.48 -21.62 10.63 19.94 0.21 -21.41 16 24 O -0.52 -17.15 12.70 -56.12 -0.71 -17.86 16 25 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 28 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 4.27 5.17 -2.38 -0.01 4.26 16 33 H 0.03 1.18 8.04 -2.39 -0.02 1.17 16 34 H 0.24 13.84 8.31 -92.71 -0.77 13.07 16 35 H 0.08 3.46 5.43 -2.39 -0.01 3.45 16 36 H 0.06 2.14 8.01 -2.38 -0.02 2.12 16 37 H 0.16 3.92 8.05 -2.91 -0.02 3.90 16 38 H 0.17 3.32 8.06 -2.91 -0.02 3.29 16 39 H 0.15 4.56 7.63 -2.91 -0.02 4.53 16 40 H 0.42 10.36 9.11 -74.06 -0.67 9.68 16 Total: -1.00 -64.16 336.57 5.39 -58.77 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.39 Total: 19.53 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 4.18 Total: -1.21 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -1.47 Total: -81.64 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -0.50 Total: -39.27 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.78 Total: -3.39 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -64.16 5.39 -58.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238237792.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.343 kcal (2) G-P(sol) polarization free energy of solvation -64.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds