Wall clock time and date at job start Tue Mar 31 2020 06:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32607 * 1 3 3 C 1.50697 * 119.99848 * 2 1 4 4 C 1.47755 * 120.00264 * 179.97438 * 2 1 3 5 5 C 1.39537 * 119.74393 * 0.02562 * 4 2 1 6 6 C 1.38345 * 119.05093 * 180.02562 * 5 4 2 7 7 C 1.38818 * 118.53115 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.30262 * 179.97438 * 7 6 5 9 9 O 1.42911 * 109.46845 * 89.99941 * 8 7 6 10 10 C 1.35675 * 116.99567 * 180.02562 * 9 8 7 11 11 C 1.39314 * 119.81564 * 180.02562 * 10 9 8 12 12 C 1.36436 * 120.18679 * 180.27303 * 11 10 9 13 13 C 1.40839 * 119.80658 * 359.49986 * 12 11 10 14 14 C 1.41214 * 120.17523 * 180.22651 * 13 12 11 15 15 H 1.07998 * 120.00106 * 205.15988 * 14 13 12 16 16 C 1.39900 * 119.99897 * 25.16786 * 14 13 12 17 17 N 1.30877 * 119.99964 * 17.95935 * 16 14 13 18 18 Si 1.86804 * 119.99799 * 197.96847 * 16 14 13 19 19 H 1.48497 * 109.47499 * 94.50679 * 18 16 14 20 20 H 1.48498 * 109.46920 * 214.51003 * 18 16 14 21 21 H 1.48503 * 109.46747 * 334.50589 * 18 16 14 22 22 C 1.40833 * 119.64336 * 0.49469 * 13 12 11 23 23 C 1.36433 * 119.80947 * 359.75507 * 22 13 12 24 24 C 1.38271 * 119.39712 * 0.25352 * 7 6 5 25 25 N 1.31736 * 120.91518 * 359.45726 * 24 7 6 26 26 H 1.08003 * 120.00047 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99681 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46973 * 269.99468 * 3 2 1 29 29 H 1.09006 * 109.47343 * 29.99046 * 3 2 1 30 30 H 1.08998 * 109.47284 * 149.99467 * 3 2 1 31 31 H 1.07996 * 120.47694 * 359.97289 * 5 4 2 32 32 H 1.08000 * 120.73946 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.47174 * 330.00753 * 8 7 6 34 34 H 1.08997 * 109.47260 * 209.99510 * 8 7 6 35 35 H 1.08005 * 119.90322 * 359.97438 * 11 10 9 36 36 H 1.07997 * 120.09477 * 179.72057 * 12 11 10 37 37 H 0.97003 * 119.99637 * 180.02562 * 17 16 14 38 38 H 1.08001 * 120.08913 * 179.73279 * 22 13 12 39 39 H 1.08003 * 119.90178 * 179.97438 * 23 22 13 40 40 H 1.07997 * 119.53708 * 179.74946 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3261 0.0000 0.0000 3 6 2.0795 1.3051 0.0000 4 6 2.0649 -1.2796 0.0006 5 6 1.3619 -2.4849 0.0006 6 6 2.0681 -3.6745 0.0016 7 6 3.4553 -3.6221 0.0022 8 6 4.2643 -4.8935 0.0039 9 8 4.5205 -5.2969 -1.3429 10 6 5.2421 -6.4322 -1.5191 11 6 5.5267 -6.8792 -2.8075 12 6 6.2471 -8.0229 -2.9934 13 6 6.7122 -8.7463 -1.8782 14 6 7.4625 -9.9285 -2.0616 15 1 7.4758 -10.6848 -1.2908 16 6 8.1889 -10.1199 -3.2419 17 7 8.4682 -9.0986 -4.0113 18 14 8.7600 -11.8331 -3.7197 19 1 7.7673 -12.4478 -4.6373 20 1 10.0759 -11.7438 -4.4020 21 1 8.8907 -12.6695 -2.4996 22 6 6.4202 -8.2875 -0.5791 23 6 5.6942 -7.1447 -0.4107 24 6 4.0880 -2.3926 0.0069 25 7 3.3929 -1.2736 0.0002 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 2.2613 1.6197 -1.0277 29 1 1.4903 2.0648 0.5137 30 1 3.0319 1.1748 0.5139 31 1 0.2819 -2.4891 0.0006 32 1 1.5517 -4.6230 0.0013 33 1 3.7082 -5.6773 0.5183 34 1 5.2100 -4.7217 0.5178 35 1 5.1720 -6.3213 -3.6616 36 1 6.4630 -8.3704 -3.9929 37 1 8.9715 -9.2314 -4.8298 38 1 6.7696 -8.8390 0.2812 39 1 5.4691 -6.7917 0.5849 40 1 5.1671 -2.3492 0.0114 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240832925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:04 Heat of formation + Delta-G solvation = 28.981358 kcal Electronic energy + Delta-G solvation = -21475.181014 eV Core-core repulsion = 18220.134647 eV Total energy + Delta-G solvation = -3255.046367 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.43948 -38.77109 -36.58361 -35.60868 -33.43155 -32.78760 -31.31878 -29.73940 -29.01393 -27.54379 -26.62471 -24.72031 -23.41210 -22.81994 -20.85348 -20.59835 -19.54496 -17.39759 -17.06437 -16.77682 -16.62948 -15.44069 -15.13686 -14.76485 -14.60921 -14.34207 -13.98284 -13.77611 -13.60089 -13.21783 -13.11431 -12.94068 -12.35761 -12.20217 -12.10653 -11.84713 -11.73028 -11.46058 -11.35400 -11.11682 -10.83447 -10.69293 -10.22292 -10.01395 -9.90125 -9.83376 -9.53709 -9.36347 -9.05583 -8.52797 -7.67158 -7.06103 -6.74459 -4.27876 0.54142 1.17393 2.13274 2.75404 2.92661 3.07820 3.11394 3.19298 3.67952 3.93915 3.99702 4.28160 4.44015 4.59361 4.75330 4.82158 4.88131 4.97734 5.16737 5.31993 5.43466 5.51110 5.58099 5.63136 5.63960 5.70758 5.78268 5.90491 6.04531 6.16988 6.19678 6.23532 6.42481 6.61016 6.68906 6.95463 7.08739 7.16162 7.43015 7.53048 7.76154 7.83637 7.98462 8.17693 8.41275 8.62496 8.87830 8.96008 10.20321 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.048375 B = 0.002349 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.675518 B =11919.597854 C =12042.728329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.075 4.075 3 C -0.111 4.111 4 C 0.154 3.846 5 C -0.168 4.168 6 C -0.052 4.052 7 C -0.133 4.133 8 C 0.111 3.889 9 O -0.322 6.322 10 C -0.011 4.011 11 C -0.118 4.118 12 C -0.134 4.134 13 C 0.089 3.911 14 C -0.464 4.464 15 H 0.077 0.923 16 C 0.075 3.925 17 N -0.798 5.798 18 Si 0.908 3.092 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.198 4.198 23 C -0.166 4.166 24 C 0.125 3.875 25 N -0.477 5.477 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.125 0.875 37 H 0.280 0.720 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.025 12.933 6.637 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.075 4.075 3 C -0.168 4.168 4 C 0.018 3.982 5 C -0.188 4.188 6 C -0.078 4.078 7 C -0.135 4.135 8 C 0.034 3.966 9 O -0.238 6.238 10 C -0.054 4.054 11 C -0.137 4.137 12 C -0.153 4.153 13 C 0.087 3.913 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.142 4.142 17 N -0.424 5.424 18 Si 0.732 3.268 19 H -0.194 1.194 20 H -0.204 1.204 21 H -0.187 1.187 22 C -0.218 4.218 23 C -0.185 4.185 24 C -0.033 4.033 25 N -0.185 5.185 26 H 0.129 0.871 27 H 0.122 0.878 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.155 0.845 32 H 0.156 0.844 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.142 0.858 37 H 0.091 0.909 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.495 13.911 6.277 19.106 hybrid contribution -0.004 -1.743 -0.078 1.745 sum -11.499 12.167 6.198 17.852 Atomic orbital electron populations 1.24285 0.94564 1.02619 0.99948 1.20370 0.93953 0.92808 1.00419 1.20720 1.00799 0.92826 1.02463 1.20065 0.89679 0.92693 0.95744 1.22116 1.01280 0.92469 1.02895 1.21496 0.93441 0.98786 0.94082 1.20798 0.94531 0.96123 1.02035 1.21149 0.97923 0.92114 0.85371 1.85904 1.71177 1.41585 1.25180 1.18576 1.03267 0.89276 0.94271 1.19830 1.02598 0.98319 0.92925 1.20959 0.99022 0.95510 0.99809 1.17607 0.90612 0.92613 0.90508 1.19479 1.25090 1.03019 1.01753 0.90493 1.25889 0.94397 0.98294 0.95661 1.69837 1.29553 1.31189 1.11804 0.86309 0.78356 0.82575 0.79517 1.19384 1.20354 1.18653 1.20570 1.06447 0.98021 0.96733 1.20407 1.04084 0.98548 0.95466 1.22711 1.00455 0.86712 0.93425 1.67784 1.07333 1.30893 1.12467 0.87137 0.87773 0.91313 0.91943 0.90564 0.84486 0.84373 0.91988 0.91785 0.88517 0.85763 0.90901 0.88677 0.88750 0.82258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.34 13.74 28.83 0.40 -0.95 16 2 C -0.07 -0.75 6.01 -102.64 -0.62 -1.37 16 3 C -0.11 -0.99 9.81 36.00 0.35 -0.64 16 4 C 0.15 1.91 6.73 -83.08 -0.56 1.35 16 5 C -0.17 -1.88 9.43 -39.06 -0.37 -2.25 16 6 C -0.05 -0.64 9.84 -39.33 -0.39 -1.03 16 7 C -0.13 -1.85 5.53 -104.40 -0.58 -2.42 16 8 C 0.11 1.72 4.88 36.00 0.18 1.90 16 9 O -0.32 -6.49 10.11 -18.73 -0.19 -6.68 16 10 C -0.01 -0.25 6.71 -38.78 -0.26 -0.51 16 11 C -0.12 -2.84 9.92 -39.83 -0.40 -3.24 16 12 C -0.13 -3.47 8.64 -39.25 -0.34 -3.81 16 13 C 0.09 2.36 5.57 -106.80 -0.59 1.76 16 14 C -0.46 -12.21 9.04 -37.83 -0.34 -12.56 16 15 H 0.08 1.95 7.91 -52.49 -0.42 1.54 16 16 C 0.07 1.87 5.13 -17.34 -0.09 1.78 16 17 N -0.80 -20.60 11.00 55.55 0.61 -19.99 16 18 Si 0.91 18.61 29.60 -169.99 -5.03 13.57 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 22 C -0.20 -4.80 9.74 -39.25 -0.38 -5.18 16 23 C -0.17 -3.68 8.96 -39.83 -0.36 -4.04 16 24 C 0.13 1.72 10.85 -17.58 -0.19 1.53 16 25 N -0.48 -6.62 9.46 -9.88 -0.09 -6.71 16 26 H 0.11 0.64 8.05 -52.48 -0.42 0.21 16 27 H 0.10 0.69 6.01 -52.48 -0.32 0.37 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 30 H 0.08 0.76 7.61 -51.93 -0.40 0.37 16 31 H 0.14 1.13 6.15 -52.49 -0.32 0.81 16 32 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.06 0.90 7.59 -51.93 -0.39 0.50 16 34 H 0.06 0.94 7.60 -51.93 -0.39 0.55 16 35 H 0.10 2.17 8.06 -52.48 -0.42 1.74 16 36 H 0.12 3.30 6.21 -52.49 -0.33 2.98 16 37 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 38 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.09 1.78 6.27 -52.48 -0.33 1.46 16 40 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 342.16 15.07 5.16 5.16 Total: -1.00 -29.17 342.16 -9.06 -38.23 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.98 Total: 6.09 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: -4.53 Total: -29.67 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.52 Total: -26.70 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.19 Total: -6.68 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.17 -9.06 -38.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240832925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.213 kcal (2) G-P(sol) polarization free energy of solvation -29.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds