Wall clock time and date at job start Tue Mar 31 2020 06:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32607 * 1 3 3 C 1.50697 * 119.99848 * 2 1 4 4 C 1.47755 * 120.00264 * 179.97438 * 2 1 3 5 5 C 1.39537 * 119.74393 * 0.02562 * 4 2 1 6 6 C 1.38345 * 119.05093 * 180.02562 * 5 4 2 7 7 C 1.38818 * 118.53115 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.30262 * 179.97438 * 7 6 5 9 9 O 1.42911 * 109.46845 * 89.99941 * 8 7 6 10 10 C 1.35675 * 116.99567 * 180.02562 * 9 8 7 11 11 C 1.39314 * 119.81564 * 180.02562 * 10 9 8 12 12 C 1.36436 * 120.18679 * 180.27303 * 11 10 9 13 13 C 1.40839 * 119.80658 * 359.49986 * 12 11 10 14 14 C 1.41214 * 120.17523 * 180.22651 * 13 12 11 15 15 H 1.07998 * 120.00106 * 205.15988 * 14 13 12 16 16 C 1.39900 * 119.99897 * 25.16786 * 14 13 12 17 17 N 1.30877 * 119.99964 * 17.95935 * 16 14 13 18 18 Si 1.86804 * 119.99799 * 197.96847 * 16 14 13 19 19 H 1.48497 * 109.47499 * 94.50679 * 18 16 14 20 20 H 1.48498 * 109.46920 * 214.51003 * 18 16 14 21 21 H 1.48503 * 109.46747 * 334.50589 * 18 16 14 22 22 C 1.40833 * 119.64336 * 0.49469 * 13 12 11 23 23 C 1.36433 * 119.80947 * 359.75507 * 22 13 12 24 24 C 1.38271 * 119.39712 * 0.25352 * 7 6 5 25 25 N 1.31736 * 120.91518 * 359.45726 * 24 7 6 26 26 H 1.08003 * 120.00047 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99681 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46973 * 269.99468 * 3 2 1 29 29 H 1.09006 * 109.47343 * 29.99046 * 3 2 1 30 30 H 1.08998 * 109.47284 * 149.99467 * 3 2 1 31 31 H 1.07996 * 120.47694 * 359.97289 * 5 4 2 32 32 H 1.08000 * 120.73946 * 180.02562 * 6 5 4 33 33 H 1.08998 * 109.47174 * 330.00753 * 8 7 6 34 34 H 1.08997 * 109.47260 * 209.99510 * 8 7 6 35 35 H 1.08005 * 119.90322 * 359.97438 * 11 10 9 36 36 H 1.07997 * 120.09477 * 179.72057 * 12 11 10 37 37 H 0.97003 * 119.99637 * 180.02562 * 17 16 14 38 38 H 1.08001 * 120.08913 * 179.73279 * 22 13 12 39 39 H 1.08003 * 119.90178 * 179.97438 * 23 22 13 40 40 H 1.07997 * 119.53708 * 179.74946 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3261 0.0000 0.0000 3 6 2.0795 1.3051 0.0000 4 6 2.0649 -1.2796 0.0006 5 6 1.3619 -2.4849 0.0006 6 6 2.0681 -3.6745 0.0016 7 6 3.4553 -3.6221 0.0022 8 6 4.2643 -4.8935 0.0039 9 8 4.5205 -5.2969 -1.3429 10 6 5.2421 -6.4322 -1.5191 11 6 5.5267 -6.8792 -2.8075 12 6 6.2471 -8.0229 -2.9934 13 6 6.7122 -8.7463 -1.8782 14 6 7.4625 -9.9285 -2.0616 15 1 7.4758 -10.6848 -1.2908 16 6 8.1889 -10.1199 -3.2419 17 7 8.4682 -9.0986 -4.0113 18 14 8.7600 -11.8331 -3.7197 19 1 7.7673 -12.4478 -4.6373 20 1 10.0759 -11.7438 -4.4020 21 1 8.8907 -12.6695 -2.4996 22 6 6.4202 -8.2875 -0.5791 23 6 5.6942 -7.1447 -0.4107 24 6 4.0880 -2.3926 0.0069 25 7 3.3929 -1.2736 0.0002 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9354 -0.0004 28 1 2.2613 1.6197 -1.0277 29 1 1.4903 2.0648 0.5137 30 1 3.0319 1.1748 0.5139 31 1 0.2819 -2.4891 0.0006 32 1 1.5517 -4.6230 0.0013 33 1 3.7082 -5.6773 0.5183 34 1 5.2100 -4.7217 0.5178 35 1 5.1720 -6.3213 -3.6616 36 1 6.4630 -8.3704 -3.9929 37 1 8.9715 -9.2314 -4.8298 38 1 6.7696 -8.8390 0.2812 39 1 5.4691 -6.7917 0.5849 40 1 5.1671 -2.3492 0.0114 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240832925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:03 Heat of formation + Delta-G solvation = 14.992331 kcal Electronic energy + Delta-G solvation = -21475.787623 eV Core-core repulsion = 18220.134647 eV Total energy + Delta-G solvation = -3255.652976 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.42232 -40.40306 -38.24574 -36.47530 -35.22125 -33.82978 -32.37632 -31.51815 -30.84958 -28.23414 -27.82635 -26.50892 -24.33659 -23.98415 -22.63853 -22.31047 -20.33725 -19.26121 -18.71850 -17.75666 -17.58474 -17.04584 -16.52105 -16.01467 -15.79548 -15.72511 -15.28520 -15.04212 -14.72242 -14.35683 -14.11878 -14.01077 -13.96447 -13.80008 -13.62720 -13.12844 -12.91953 -12.79260 -12.60809 -12.42003 -12.35435 -12.27435 -11.74688 -11.60753 -11.28095 -10.99460 -10.88667 -10.81016 -10.47275 -9.56345 -9.35931 -8.93167 -8.59943 -6.23141 -0.35092 0.24119 0.94436 1.02623 1.35975 1.40053 1.52413 1.53510 2.22905 2.55679 2.72432 3.03981 3.20717 3.61037 3.69575 3.77315 3.84671 3.94064 4.13963 4.26175 4.28935 4.34892 4.42656 4.53416 4.71094 4.74952 4.84569 4.86396 4.90751 5.04860 5.06694 5.16614 5.21566 5.23691 5.28154 5.47802 5.57366 5.64083 5.67487 5.80889 5.88347 6.05826 6.26029 6.55797 6.79255 6.89837 6.95065 7.08894 8.36927 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.048375 B = 0.002349 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.675518 B =11919.597854 C =12042.728329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.108 4.108 4 C 0.147 3.853 5 C -0.168 4.168 6 C -0.054 4.054 7 C -0.153 4.153 8 C 0.108 3.892 9 O -0.333 6.333 10 C 0.001 3.999 11 C -0.133 4.133 12 C -0.153 4.153 13 C 0.055 3.945 14 C -0.498 4.498 15 H 0.077 0.923 16 C 0.032 3.968 17 N -0.832 5.832 18 Si 0.983 3.017 19 H -0.263 1.263 20 H -0.270 1.270 21 H -0.258 1.258 22 C -0.207 4.207 23 C -0.163 4.163 24 C 0.113 3.887 25 N -0.500 5.500 26 H 0.134 0.866 27 H 0.118 0.882 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.170 0.830 32 H 0.156 0.844 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.287 0.713 38 H 0.107 0.893 39 H 0.131 0.869 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.050 13.497 7.570 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.114 4.114 3 C -0.165 4.165 4 C 0.011 3.989 5 C -0.187 4.187 6 C -0.079 4.079 7 C -0.155 4.155 8 C 0.033 3.967 9 O -0.250 6.250 10 C -0.042 4.042 11 C -0.151 4.151 12 C -0.172 4.172 13 C 0.053 3.947 14 C -0.528 4.528 15 H 0.095 0.905 16 C -0.182 4.182 17 N -0.459 5.459 18 Si 0.803 3.197 19 H -0.188 1.188 20 H -0.195 1.195 21 H -0.181 1.181 22 C -0.226 4.226 23 C -0.181 4.181 24 C -0.044 4.044 25 N -0.209 5.209 26 H 0.152 0.848 27 H 0.136 0.864 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.187 0.813 32 H 0.174 0.826 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.149 0.851 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.530 14.496 7.228 21.105 hybrid contribution 0.420 -1.670 -0.280 1.745 sum -13.110 12.825 6.948 19.612 Atomic orbital electron populations 1.24652 0.93608 1.04447 0.95327 1.20496 0.94901 0.92126 1.03926 1.20684 1.00264 0.93220 1.02287 1.20631 0.89457 0.94389 0.94414 1.22441 1.02829 0.91514 1.01954 1.21776 0.92880 1.00099 0.93171 1.20691 0.95282 0.95179 1.04334 1.21390 0.98913 0.93310 0.83132 1.85897 1.70365 1.40210 1.28489 1.18625 1.02129 0.89656 0.93830 1.19989 1.02692 0.98109 0.94348 1.20874 1.00463 0.96703 0.99176 1.17963 0.91656 0.93457 0.91619 1.19722 1.26501 1.03544 1.03053 0.90522 1.26752 0.94034 1.02281 0.95084 1.69896 1.30272 1.33296 1.12389 0.85186 0.78057 0.77206 0.79201 1.18814 1.19463 1.18135 1.20820 1.06641 0.98844 0.96343 1.20714 1.02821 0.97491 0.97121 1.22841 1.00900 0.86988 0.93691 1.67812 1.08487 1.30949 1.13650 0.84773 0.86415 0.91688 0.89829 0.92481 0.81313 0.82611 0.90512 0.91029 0.87599 0.87393 0.90239 0.87519 0.85133 0.81976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 13.74 66.66 0.92 -0.71 16 2 C -0.11 -2.04 6.01 -18.51 -0.11 -2.15 16 3 C -0.11 -1.79 9.81 71.23 0.70 -1.09 16 4 C 0.15 3.43 6.73 41.83 0.28 3.71 16 5 C -0.17 -3.34 9.43 22.61 0.21 -3.12 16 6 C -0.05 -1.20 9.84 22.43 0.22 -0.98 16 7 C -0.15 -4.08 5.53 -19.72 -0.11 -4.18 16 8 C 0.11 3.19 4.88 71.24 0.35 3.53 16 9 O -0.33 -13.09 10.11 -89.92 -0.91 -13.99 16 10 C 0.00 0.06 6.71 22.79 0.15 0.21 16 11 C -0.13 -6.50 9.92 22.11 0.22 -6.28 16 12 C -0.15 -8.21 8.64 22.49 0.19 -8.02 16 13 C 0.06 3.00 5.57 -21.28 -0.12 2.88 16 14 C -0.50 -26.97 9.04 23.40 0.21 -26.76 16 15 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 16 C 0.03 1.65 5.13 85.24 0.44 2.08 16 17 N -0.83 -44.18 11.00 21.82 0.24 -43.94 16 18 Si 0.98 38.51 29.60 68.60 2.03 40.54 16 19 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 20 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 21 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 22 C -0.21 -10.05 9.74 22.48 0.22 -9.83 16 23 C -0.16 -7.03 8.96 22.11 0.20 -6.83 16 24 C 0.11 3.10 10.85 84.72 0.92 4.02 16 25 N -0.50 -13.77 9.46 -185.16 -1.75 -15.52 16 26 H 0.13 0.92 8.05 -2.91 -0.02 0.90 16 27 H 0.12 1.01 6.01 -2.91 -0.02 0.99 16 28 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.08 0.96 8.07 -2.38 -0.02 0.95 16 30 H 0.06 1.14 7.61 -2.39 -0.02 1.12 16 31 H 0.17 2.12 6.15 -2.91 -0.02 2.10 16 32 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 33 H 0.08 2.04 7.59 -2.39 -0.02 2.02 16 34 H 0.07 1.99 7.60 -2.39 -0.02 1.98 16 35 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 36 H 0.11 6.04 6.21 -2.91 -0.02 6.02 16 37 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 38 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 39 H 0.13 4.60 6.27 -2.91 -0.02 4.58 16 40 H 0.16 4.06 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -64.64 342.16 5.55 -59.09 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 1.05 Total: 27.35 kcal Atomic # 6 Polarization: -58.42 SS G_CDS: 4.89 Total: -53.53 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: -1.51 Total: -59.46 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.91 Total: -13.99 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -64.64 5.55 -59.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240832925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.082 kcal (2) G-P(sol) polarization free energy of solvation -64.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds