Wall clock time and date at job start Tue Mar 31 2020 06:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.39815 * 120.84845 * 2 1 4 4 C 1.48285 * 120.54088 * 0.02562 * 3 2 1 5 5 C 1.39287 * 120.16006 * 245.25479 * 4 3 2 6 6 C 1.38014 * 119.94667 * 180.23305 * 5 4 3 7 7 C 1.38446 * 120.26871 * 359.79061 * 6 5 4 8 8 C 1.38108 * 120.32678 * 359.97438 * 7 6 5 9 9 C 1.38769 * 120.04684 * 359.97438 * 8 7 6 10 10 O 1.35664 * 120.13251 * 180.02562 * 9 8 7 11 11 C 1.34807 * 117.00319 * 354.39488 * 10 9 8 12 12 H 1.08001 * 120.00088 * 5.07090 * 11 10 9 13 13 C 1.38650 * 120.00066 * 185.06210 * 11 10 9 14 14 N 1.31553 * 120.00032 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99946 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46625 * 90.00478 * 15 13 11 17 17 H 1.48495 * 109.46976 * 210.00228 * 15 13 11 18 18 H 1.48497 * 109.47389 * 330.00781 * 15 13 11 19 19 C 1.39369 * 118.91581 * 180.29345 * 3 2 1 20 20 N 1.31735 * 120.58728 * 359.43308 * 19 3 2 21 21 C 1.31897 * 121.85541 * 0.58261 * 20 19 3 22 22 C 1.38324 * 121.04180 * 359.70421 * 21 20 19 23 23 C 1.50698 * 120.35142 * 180.02562 * 22 21 20 24 24 C 1.52999 * 117.50456 * 8.72243 * 23 22 21 25 25 C 1.52995 * 117.49807 * 300.05946 * 23 22 21 26 26 H 1.09004 * 109.47404 * 89.99931 * 1 2 3 27 27 H 1.08994 * 109.47472 * 209.99823 * 1 2 3 28 28 H 1.09002 * 109.47361 * 330.00475 * 1 2 3 29 29 H 1.07998 * 120.02955 * 0.02562 * 5 4 3 30 30 H 1.08004 * 119.86727 * 179.76914 * 6 5 4 31 31 H 1.08003 * 119.83768 * 180.02562 * 7 6 5 32 32 H 1.08001 * 119.98063 * 179.97438 * 8 7 6 33 33 H 0.97002 * 120.00016 * 179.97438 * 14 13 11 34 34 H 1.08002 * 119.70231 * 179.72194 * 19 3 2 35 35 H 1.08002 * 119.47423 * 179.67796 * 21 20 19 36 36 H 1.09005 * 115.54384 * 154.39982 * 23 22 21 37 37 H 1.09001 * 117.49389 * 0.02562 * 24 23 22 38 38 H 1.08992 * 117.49621 * 145.01801 * 24 23 22 39 39 H 1.09002 * 117.50080 * 214.97747 * 25 23 22 40 40 H 1.08997 * 117.50692 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2238 1.2004 0.0000 4 6 1.5138 2.5021 0.0006 5 6 1.6208 3.3581 -1.0930 6 6 0.9619 4.5708 -1.0858 7 6 0.1904 4.9393 0.0031 8 6 0.0725 4.0971 1.0913 9 6 0.7284 2.8742 1.0977 10 8 0.6135 2.0453 2.1655 11 6 -0.0568 2.5160 3.2363 12 1 -0.5432 3.4790 3.1884 13 6 -0.1218 1.7635 4.3991 14 7 0.4710 0.5906 4.4575 15 14 -1.0499 2.4160 5.8831 16 1 -2.4664 1.9754 5.8139 17 1 -0.4284 1.8914 7.1255 18 1 -0.9929 3.8999 5.8895 19 6 3.6167 1.1534 -0.0062 20 7 4.2485 -0.0026 -0.0008 21 6 3.5992 -1.1507 -0.0008 22 6 2.2165 -1.1883 -0.0004 23 6 1.4906 -2.5089 0.0002 24 6 2.3258 -3.7742 0.2061 25 6 1.7457 -3.4557 -1.1742 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 2.2216 3.0746 -1.9445 30 1 1.0488 5.2352 -1.9328 31 1 -0.3226 5.8898 0.0012 32 1 -0.5305 4.3904 1.9379 33 1 0.4258 0.0644 5.2711 34 1 4.1832 2.0729 -0.0109 35 1 4.1561 -2.0761 -0.0016 36 1 0.4870 -2.4934 0.4254 37 1 3.4003 -3.6513 0.3416 38 1 1.8716 -4.5912 0.7666 39 1 0.9101 -4.0637 -1.5212 40 1 2.4382 -3.1234 -1.9475 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243586486.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:38 Heat of formation + Delta-G solvation = 53.395294 kcal Electronic energy + Delta-G solvation = -23379.274607 eV Core-core repulsion = 20125.286909 eV Total energy + Delta-G solvation = -3253.987699 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.20797 -38.91314 -36.91776 -36.34571 -33.61583 -32.33094 -31.51243 -29.24254 -28.44819 -27.12824 -25.38647 -24.23310 -22.47437 -22.10224 -21.56647 -20.84433 -19.71730 -18.01903 -17.03163 -16.48636 -16.02131 -15.19788 -15.06013 -14.67271 -14.49519 -14.19238 -13.79736 -13.73218 -13.42213 -13.08354 -12.64610 -12.28892 -12.14413 -12.10870 -11.88235 -11.74984 -11.42401 -11.39553 -11.12219 -10.92005 -10.84409 -10.71827 -10.56922 -10.50004 -10.23373 -9.47866 -9.02998 -8.88621 -8.69846 -8.31257 -7.97260 -7.24227 -6.50171 -4.09558 1.51507 1.78807 2.16535 2.30971 3.08155 3.10169 3.14333 3.90193 3.90619 4.37566 4.48411 4.66790 4.96464 5.00128 5.00974 5.12515 5.16776 5.30548 5.33547 5.44447 5.50476 5.60398 5.67958 5.75743 5.88070 5.98521 6.03126 6.10943 6.14242 6.16784 6.22975 6.28994 6.31779 6.58749 6.64814 6.70342 6.81003 6.97890 7.05937 7.11289 7.27888 7.29817 7.36450 7.72509 7.92383 8.49339 8.94373 9.62163 10.66007 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.011475 B = 0.006527 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.523099 B = 4288.975415 C = 5935.875115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.004 4.004 3 C -0.054 4.054 4 C -0.132 4.132 5 C -0.058 4.058 6 C -0.214 4.214 7 C -0.069 4.069 8 C -0.234 4.234 9 C 0.165 3.835 10 O -0.162 6.162 11 C -0.397 4.397 12 H 0.092 0.908 13 C 0.044 3.956 14 N -0.852 5.852 15 Si 0.937 3.063 16 H -0.273 1.273 17 H -0.277 1.277 18 H -0.267 1.267 19 C 0.098 3.902 20 N -0.490 5.490 21 C 0.085 3.915 22 C -0.106 4.106 23 C -0.105 4.105 24 C -0.177 4.177 25 C -0.172 4.172 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.129 0.871 33 H 0.270 0.730 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.278 -2.509 -8.929 9.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.012 4.012 3 C -0.056 4.056 4 C -0.134 4.134 5 C -0.077 4.077 6 C -0.233 4.233 7 C -0.087 4.087 8 C -0.253 4.253 9 C 0.110 3.890 10 O -0.064 6.064 11 C -0.473 4.473 12 H 0.109 0.891 13 C -0.162 4.162 14 N -0.486 5.486 15 Si 0.762 3.238 16 H -0.199 1.199 17 H -0.203 1.203 18 H -0.192 1.192 19 C -0.058 4.058 20 N -0.198 5.198 21 C -0.072 4.072 22 C -0.108 4.108 23 C -0.123 4.123 24 C -0.214 4.214 25 C -0.209 4.209 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.105 0.895 29 H 0.130 0.870 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.146 0.854 33 H 0.080 0.920 34 H 0.167 0.833 35 H 0.163 0.837 36 H 0.134 0.866 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.314 -2.951 -8.684 9.266 hybrid contribution -1.422 0.481 0.958 1.781 sum -0.108 -2.470 -7.726 8.112 Atomic orbital electron populations 1.20839 0.90495 1.04529 1.01193 1.20096 0.96666 0.91114 0.93296 1.19442 0.93733 0.92603 0.99811 1.17632 1.04693 0.95446 0.95617 1.20677 0.97926 0.93228 0.95846 1.20515 1.04946 0.98094 0.99751 1.20821 0.96821 0.97965 0.93095 1.21125 1.07084 0.96206 1.00930 1.19279 0.91931 0.89320 0.88448 1.84009 1.65247 1.36926 1.20217 1.21329 1.31440 1.05118 0.89402 0.89089 1.25256 0.97307 0.95546 0.98049 1.70050 1.39844 1.10493 1.28233 0.85766 0.79095 0.79100 0.79826 1.19876 1.20254 1.19181 1.22751 0.90953 0.95655 0.96452 1.67544 1.40810 0.98298 1.13151 1.22401 0.90949 0.95992 0.97858 1.19795 0.94323 0.93544 1.03122 1.20921 1.00238 0.87933 1.03227 1.23038 1.00001 0.98838 0.99516 1.23012 1.03444 1.02762 0.91669 0.91787 0.91419 0.89510 0.86969 0.87427 0.87428 0.85353 0.92009 0.83294 0.83731 0.86551 0.88465 0.88499 0.88678 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.17 9.15 36.00 0.33 -1.84 16 2 C 0.00 -0.08 5.73 -103.98 -0.60 -0.68 16 3 C -0.05 -1.10 4.95 -104.75 -0.52 -1.62 16 4 C -0.13 -2.71 4.71 -104.73 -0.49 -3.20 16 5 C -0.06 -1.03 9.74 -39.27 -0.38 -1.41 16 6 C -0.21 -3.57 10.03 -39.59 -0.40 -3.96 16 7 C -0.07 -1.21 10.03 -39.55 -0.40 -1.61 16 8 C -0.23 -4.87 9.16 -39.43 -0.36 -5.24 16 9 C 0.16 3.80 5.32 -38.74 -0.21 3.59 16 10 O -0.16 -4.32 7.74 0.38 0.00 -4.32 16 11 C -0.40 -10.60 9.49 30.88 0.29 -10.31 16 12 H 0.09 2.26 5.21 -52.49 -0.27 1.99 16 13 C 0.04 1.17 5.49 -17.52 -0.10 1.07 16 14 N -0.85 -24.20 13.67 55.48 0.76 -23.44 16 15 Si 0.94 20.04 29.55 -169.99 -5.02 15.02 16 16 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 17 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 19 C 0.10 1.92 10.91 -17.17 -0.19 1.73 16 20 N -0.49 -9.45 10.35 -12.95 -0.13 -9.58 16 21 C 0.08 1.50 10.46 -17.49 -0.18 1.32 16 22 C -0.11 -1.90 5.62 -104.53 -0.59 -2.49 16 23 C -0.10 -1.55 5.56 -91.78 -0.51 -2.06 16 24 C -0.18 -2.16 9.87 -26.69 -0.26 -2.42 16 25 C -0.17 -2.01 10.17 -26.70 -0.27 -2.28 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.23 6.20 -51.93 -0.32 0.90 16 28 H 0.09 1.89 4.86 -51.93 -0.25 1.64 16 29 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 30 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 31 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 32 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 33 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.15 2.61 8.06 -52.49 -0.42 2.19 16 35 H 0.15 2.14 6.03 -52.49 -0.32 1.82 16 36 H 0.12 1.77 6.36 -51.93 -0.33 1.43 16 37 H 0.10 1.14 6.20 -51.93 -0.32 0.82 16 38 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 332.62 15.07 5.01 5.01 Total: -1.00 -29.85 332.62 -8.84 -38.69 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -4.63 Total: 10.01 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: -4.83 Total: -31.39 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.62 Total: -33.02 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: 0.00 Total: -4.32 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.85 -8.84 -38.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586486.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.089 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds