Wall clock time and date at job start Tue Mar 31 2020 06:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.39815 * 120.84845 * 2 1 4 4 C 1.48285 * 120.54088 * 0.02562 * 3 2 1 5 5 C 1.39287 * 120.16006 * 245.25479 * 4 3 2 6 6 C 1.38014 * 119.94667 * 180.23305 * 5 4 3 7 7 C 1.38446 * 120.26871 * 359.79061 * 6 5 4 8 8 C 1.38108 * 120.32678 * 359.97438 * 7 6 5 9 9 C 1.38769 * 120.04684 * 359.97438 * 8 7 6 10 10 O 1.35664 * 120.13251 * 180.02562 * 9 8 7 11 11 C 1.34807 * 117.00319 * 354.39488 * 10 9 8 12 12 H 1.08001 * 120.00088 * 5.07090 * 11 10 9 13 13 C 1.38650 * 120.00066 * 185.06210 * 11 10 9 14 14 N 1.31553 * 120.00032 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 119.99946 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46625 * 90.00478 * 15 13 11 17 17 H 1.48495 * 109.46976 * 210.00228 * 15 13 11 18 18 H 1.48497 * 109.47389 * 330.00781 * 15 13 11 19 19 C 1.39369 * 118.91581 * 180.29345 * 3 2 1 20 20 N 1.31735 * 120.58728 * 359.43308 * 19 3 2 21 21 C 1.31897 * 121.85541 * 0.58261 * 20 19 3 22 22 C 1.38324 * 121.04180 * 359.70421 * 21 20 19 23 23 C 1.50698 * 120.35142 * 180.02562 * 22 21 20 24 24 C 1.52999 * 117.50456 * 8.72243 * 23 22 21 25 25 C 1.52995 * 117.49807 * 300.05946 * 23 22 21 26 26 H 1.09004 * 109.47404 * 89.99931 * 1 2 3 27 27 H 1.08994 * 109.47472 * 209.99823 * 1 2 3 28 28 H 1.09002 * 109.47361 * 330.00475 * 1 2 3 29 29 H 1.07998 * 120.02955 * 0.02562 * 5 4 3 30 30 H 1.08004 * 119.86727 * 179.76914 * 6 5 4 31 31 H 1.08003 * 119.83768 * 180.02562 * 7 6 5 32 32 H 1.08001 * 119.98063 * 179.97438 * 8 7 6 33 33 H 0.97002 * 120.00016 * 179.97438 * 14 13 11 34 34 H 1.08002 * 119.70231 * 179.72194 * 19 3 2 35 35 H 1.08002 * 119.47423 * 179.67796 * 21 20 19 36 36 H 1.09005 * 115.54384 * 154.39982 * 23 22 21 37 37 H 1.09001 * 117.49389 * 0.02562 * 24 23 22 38 38 H 1.08992 * 117.49621 * 145.01801 * 24 23 22 39 39 H 1.09002 * 117.50080 * 214.97747 * 25 23 22 40 40 H 1.08997 * 117.50692 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2238 1.2004 0.0000 4 6 1.5138 2.5021 0.0006 5 6 1.6208 3.3581 -1.0930 6 6 0.9619 4.5708 -1.0858 7 6 0.1904 4.9393 0.0031 8 6 0.0725 4.0971 1.0913 9 6 0.7284 2.8742 1.0977 10 8 0.6135 2.0453 2.1655 11 6 -0.0568 2.5160 3.2363 12 1 -0.5432 3.4790 3.1884 13 6 -0.1218 1.7635 4.3991 14 7 0.4710 0.5906 4.4575 15 14 -1.0499 2.4160 5.8831 16 1 -2.4664 1.9754 5.8139 17 1 -0.4284 1.8914 7.1255 18 1 -0.9929 3.8999 5.8895 19 6 3.6167 1.1534 -0.0062 20 7 4.2485 -0.0026 -0.0008 21 6 3.5992 -1.1507 -0.0008 22 6 2.2165 -1.1883 -0.0004 23 6 1.4906 -2.5089 0.0002 24 6 2.3258 -3.7742 0.2061 25 6 1.7457 -3.4557 -1.1742 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 2.2216 3.0746 -1.9445 30 1 1.0488 5.2352 -1.9328 31 1 -0.3226 5.8898 0.0012 32 1 -0.5305 4.3904 1.9379 33 1 0.4258 0.0644 5.2711 34 1 4.1832 2.0729 -0.0109 35 1 4.1561 -2.0761 -0.0016 36 1 0.4870 -2.4934 0.4254 37 1 3.4003 -3.6513 0.3416 38 1 1.8716 -4.5912 0.7666 39 1 0.9101 -4.0637 -1.5212 40 1 2.4382 -3.1234 -1.9475 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243586486.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:37 Heat of formation + Delta-G solvation = 38.181105 kcal Electronic energy + Delta-G solvation = -23379.934344 eV Core-core repulsion = 20125.286909 eV Total energy + Delta-G solvation = -3254.647436 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.66140 -40.48959 -38.23123 -37.82848 -35.09341 -34.23535 -32.94110 -30.76088 -29.97073 -28.64136 -27.28033 -25.58491 -23.72506 -23.30451 -23.11021 -22.27348 -21.08044 -19.78842 -18.71164 -17.85865 -17.45626 -16.70110 -16.40799 -16.30184 -16.05905 -15.56269 -15.35027 -15.24779 -14.88775 -14.56425 -14.30896 -13.75022 -13.58652 -13.56204 -13.52271 -13.18886 -13.01487 -12.65944 -12.50946 -12.36813 -12.30766 -12.15918 -12.06223 -11.84326 -11.30969 -11.20206 -10.79028 -10.48421 -10.19727 -9.68136 -9.45917 -8.88104 -8.44260 -6.10795 0.05753 0.31435 0.64926 0.77723 1.33747 1.41999 1.49529 2.16051 2.67477 2.85095 3.13355 3.17263 3.40447 3.49562 3.73104 3.78695 3.87884 3.96737 4.04005 4.14255 4.20157 4.26252 4.31313 4.53558 4.59959 4.62523 4.66831 4.75223 4.77294 4.89989 5.01119 5.02249 5.07745 5.13082 5.17367 5.23207 5.26254 5.37011 5.54687 5.63918 5.70176 5.77137 5.85860 6.03037 6.22924 7.00174 7.02792 7.81192 8.76586 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.011475 B = 0.006527 C = 0.004716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.523099 B = 4288.975415 C = 5935.875115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.030 4.030 3 C -0.074 4.074 4 C -0.136 4.136 5 C -0.060 4.060 6 C -0.190 4.190 7 C -0.067 4.067 8 C -0.249 4.249 9 C 0.132 3.868 10 O -0.205 6.205 11 C -0.413 4.413 12 H 0.099 0.901 13 C -0.015 4.015 14 N -0.909 5.909 15 Si 1.009 2.991 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.255 1.255 19 C 0.084 3.916 20 N -0.501 5.501 21 C 0.079 3.921 22 C -0.104 4.104 23 C -0.139 4.139 24 C -0.168 4.168 25 C -0.146 4.146 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.140 0.860 30 H 0.152 0.848 31 H 0.144 0.856 32 H 0.119 0.881 33 H 0.269 0.731 34 H 0.162 0.838 35 H 0.175 0.825 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.286 -1.856 -10.964 11.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.037 4.037 3 C -0.076 4.076 4 C -0.138 4.138 5 C -0.078 4.078 6 C -0.208 4.208 7 C -0.085 4.085 8 C -0.269 4.269 9 C 0.080 3.920 10 O -0.111 6.111 11 C -0.489 4.489 12 H 0.116 0.884 13 C -0.213 4.213 14 N -0.546 5.546 15 Si 0.829 3.171 16 H -0.189 1.189 17 H -0.201 1.201 18 H -0.179 1.179 19 C -0.072 4.072 20 N -0.209 5.209 21 C -0.078 4.078 22 C -0.106 4.106 23 C -0.157 4.157 24 C -0.204 4.204 25 C -0.182 4.182 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.158 0.842 30 H 0.169 0.831 31 H 0.162 0.838 32 H 0.137 0.863 33 H 0.078 0.922 34 H 0.179 0.821 35 H 0.192 0.808 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.129 0.871 39 H 0.134 0.866 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.321 -2.256 -10.771 11.084 hybrid contribution -1.364 0.374 1.286 1.911 sum -0.043 -1.882 -9.486 9.671 Atomic orbital electron populations 1.20718 0.90536 1.02807 1.01987 1.20351 0.97039 0.91991 0.94350 1.19633 0.94317 0.92966 1.00705 1.17944 1.04077 0.96064 0.95708 1.21083 0.97949 0.93121 0.95602 1.21072 1.01954 0.97631 1.00152 1.21230 0.96593 0.98666 0.91977 1.21274 1.07189 0.96268 1.02120 1.19789 0.93385 0.90260 0.88518 1.83996 1.67258 1.38561 1.21266 1.21757 1.31553 1.05516 0.90121 0.88414 1.26384 0.98315 0.95710 1.00922 1.70200 1.42967 1.12388 1.29076 0.84719 0.77831 0.78936 0.75619 1.18878 1.20064 1.17888 1.22939 0.90808 0.96406 0.97040 1.67574 1.41133 0.98707 1.13458 1.22897 0.91216 0.96600 0.97097 1.20122 0.94674 0.94385 1.01450 1.20909 1.00155 0.87681 1.06989 1.23175 1.00029 0.97160 1.00068 1.23100 1.03728 1.00386 0.91014 0.89584 0.91555 0.92699 0.84189 0.83059 0.83780 0.86292 0.92206 0.82110 0.80825 0.87676 0.87874 0.87064 0.86579 0.88243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.14 9.15 71.23 0.65 -3.49 16 2 C -0.03 -1.22 5.73 -19.45 -0.11 -1.33 16 3 C -0.07 -3.11 4.95 -19.95 -0.10 -3.21 16 4 C -0.14 -5.64 4.71 -19.93 -0.09 -5.74 16 5 C -0.06 -1.97 9.74 22.47 0.22 -1.75 16 6 C -0.19 -5.57 10.03 22.27 0.22 -5.35 16 7 C -0.07 -2.17 10.03 22.29 0.22 -1.95 16 8 C -0.25 -10.45 9.16 22.37 0.20 -10.24 16 9 C 0.13 6.29 5.32 22.81 0.12 6.41 16 10 O -0.21 -11.68 7.74 -21.56 -0.17 -11.84 16 11 C -0.41 -23.29 9.49 67.92 0.64 -22.64 16 12 H 0.10 5.10 5.21 -2.91 -0.02 5.08 16 13 C -0.01 -0.81 5.49 84.83 0.47 -0.35 16 14 N -0.91 -54.70 13.67 21.61 0.30 -54.40 16 15 Si 1.01 42.53 29.55 68.60 2.03 44.55 16 16 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 17 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 18 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 19 C 0.08 3.33 10.91 84.98 0.93 4.26 16 20 N -0.50 -19.29 10.35 -194.89 -2.02 -21.30 16 21 C 0.08 2.74 10.46 84.70 0.89 3.63 16 22 C -0.10 -3.78 5.62 -19.81 -0.11 -3.89 16 23 C -0.14 -4.04 5.56 -11.54 -0.06 -4.11 16 24 C -0.17 -3.75 9.87 30.62 0.30 -3.45 16 25 C -0.15 -3.04 10.17 30.62 0.31 -2.73 16 26 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 27 H 0.07 2.56 6.20 -2.39 -0.01 2.55 16 28 H 0.05 2.55 4.86 -2.39 -0.01 2.54 16 29 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 30 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 31 H 0.14 3.63 8.06 -2.91 -0.02 3.60 16 32 H 0.12 5.09 5.64 -2.91 -0.02 5.08 16 33 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 34 H 0.16 5.69 8.06 -2.91 -0.02 5.67 16 35 H 0.17 4.85 6.03 -2.91 -0.02 4.83 16 36 H 0.11 3.28 6.36 -2.38 -0.02 3.26 16 37 H 0.10 2.18 6.20 -2.39 -0.01 2.16 16 38 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -69.71 332.62 5.91 -63.80 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: 1.07 Total: 35.11 kcal Atomic # 6 Polarization: -60.61 SS G_CDS: 4.70 Total: -55.91 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -1.72 Total: -75.71 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.17 Total: -11.84 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -69.71 5.91 -63.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243586486.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.976 kcal (2) G-P(sol) polarization free energy of solvation -69.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds