Wall clock time and date at job start Tue Mar 31 2020 06:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39798 * 120.84811 * 2 1 4 4 C 1.48328 * 120.54169 * 359.97438 * 3 2 1 5 5 C 1.39433 * 120.04872 * 310.23246 * 4 3 2 6 6 C 1.37843 * 119.94455 * 180.27486 * 5 4 3 7 7 C 1.38997 * 120.04997 * 359.47061 * 6 5 4 8 8 O 1.35693 * 119.94562 * 180.28008 * 7 6 5 9 9 C 1.34823 * 117.00409 * 354.44753 * 8 7 6 10 10 H 1.08005 * 119.99583 * 5.05962 * 9 8 7 11 11 C 1.38641 * 120.00434 * 185.05785 * 9 8 7 12 12 N 1.31562 * 120.00305 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 120.00090 * 0.02562 * 11 9 8 14 14 H 1.48494 * 109.47010 * 89.99859 * 13 11 9 15 15 H 1.48493 * 109.47175 * 210.00198 * 13 11 9 16 16 H 1.48500 * 109.46752 * 329.99812 * 13 11 9 17 17 C 1.38993 * 120.10551 * 0.29606 * 7 6 5 18 18 C 1.37840 * 120.05299 * 359.96104 * 17 7 6 19 19 C 1.39350 * 118.91638 * 180.25376 * 3 2 1 20 20 N 1.31731 * 120.59067 * 359.43234 * 19 3 2 21 21 C 1.31892 * 121.85693 * 0.58468 * 20 19 3 22 22 C 1.38324 * 121.04034 * 359.70127 * 21 20 19 23 23 C 1.50692 * 120.36271 * 180.02562 * 22 21 20 24 24 C 1.53007 * 117.49558 * 8.60181 * 23 22 21 25 25 C 1.52998 * 60.00176 * 252.50885 * 24 23 22 26 26 H 1.08993 * 109.47209 * 89.99811 * 1 2 3 27 27 H 1.09003 * 109.47060 * 210.00435 * 1 2 3 28 28 H 1.09009 * 109.46735 * 329.99749 * 1 2 3 29 29 H 1.08004 * 120.02972 * 0.02562 * 5 4 3 30 30 H 1.08000 * 119.96886 * 179.74560 * 6 5 4 31 31 H 0.96996 * 120.00152 * 180.02562 * 12 11 9 32 32 H 1.08004 * 119.97324 * 179.97438 * 17 7 6 33 33 H 1.07997 * 120.02418 * 179.97438 * 18 17 7 34 34 H 1.08000 * 119.70033 * 179.72884 * 19 3 2 35 35 H 1.08006 * 119.48391 * 179.67934 * 21 20 19 36 36 H 1.08998 * 115.55544 * 154.30392 * 23 22 21 37 37 H 1.08997 * 117.49986 * 0.02562 * 24 23 22 38 38 H 1.09004 * 117.49490 * 145.01506 * 24 23 22 39 39 H 1.08998 * 117.49861 * 252.51230 * 25 24 23 40 40 H 1.08997 * 117.49677 * 107.48424 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2239 1.2002 0.0000 4 6 1.5136 2.5024 -0.0006 5 6 0.4953 2.7418 -0.9224 6 6 -0.1595 3.9548 -0.9247 7 6 0.1872 4.9347 -0.0019 8 8 -0.4627 6.1259 -0.0024 9 6 -1.3517 6.3378 -0.9936 10 1 -1.5797 5.5467 -1.6927 11 6 -1.9731 7.5712 -1.1156 12 7 -2.8410 7.7778 -2.0825 13 14 -1.5782 8.9396 0.0931 14 1 -0.4389 9.7410 -0.4215 15 1 -2.7664 9.8154 0.2547 16 1 -1.2154 8.3501 1.4069 17 6 1.1987 4.6965 0.9211 18 6 1.8599 3.4870 0.9238 19 6 3.6166 1.1532 -0.0054 20 7 4.2484 -0.0026 0.0008 21 6 3.5993 -1.1508 0.0008 22 6 2.2166 -1.1884 0.0004 23 6 1.4905 -2.5089 0.0010 24 6 2.3260 -3.7743 0.2051 25 6 1.7448 -3.4555 -1.1738 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8901 0.5139 29 1 0.2225 1.9790 -1.6367 30 1 -0.9456 4.1422 -1.6413 31 1 -3.2754 8.6408 -2.1680 32 1 1.4666 5.4595 1.6369 33 1 2.6460 3.3026 1.6410 34 1 4.1830 2.0728 -0.0099 35 1 4.1561 -2.0762 0.0008 36 1 0.4874 -2.4937 0.4271 37 1 3.4007 -3.6517 0.3393 38 1 1.8725 -4.5918 0.7657 39 1 0.9090 -4.0632 -1.5205 40 1 2.4372 -3.1230 -1.9472 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243591443.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:40 Heat of formation + Delta-G solvation = 51.397343 kcal Electronic energy + Delta-G solvation = -22212.743498 eV Core-core repulsion = 18958.669162 eV Total energy + Delta-G solvation = -3254.074336 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.61869 -39.17601 -37.47210 -36.64152 -33.91476 -32.50777 -31.44715 -30.40681 -28.52383 -27.50695 -25.51851 -24.34063 -22.81571 -22.32245 -21.84484 -21.24933 -19.93520 -18.00128 -17.47995 -16.83228 -16.48755 -15.63820 -15.27527 -14.93262 -14.60157 -14.20323 -13.98966 -13.92765 -13.82311 -13.03401 -12.86620 -12.65832 -12.57364 -12.43607 -12.39497 -12.34652 -11.88993 -11.71142 -11.49295 -11.15344 -10.97063 -10.88165 -10.82455 -10.60692 -10.23325 -9.55353 -9.41718 -9.17166 -8.94014 -8.70854 -8.39755 -7.31104 -6.51874 -4.17931 1.01534 1.26643 2.03205 2.17655 3.16137 3.20202 3.33945 3.49892 3.94453 4.15439 4.23541 4.38053 4.55374 4.59632 4.71946 4.74186 4.82771 4.87011 4.93128 5.00486 5.11284 5.33746 5.39041 5.49511 5.56148 5.57976 5.63404 5.65868 5.79240 5.83889 5.85077 6.00555 6.02873 6.17925 6.21120 6.41466 6.47633 6.65797 6.72577 6.98029 7.09585 7.16979 7.46770 7.68831 7.92256 8.05614 8.82619 9.43384 10.55167 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.032179 B = 0.003088 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.913852 B = 9065.315970 C = 9623.768618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.036 4.036 3 C -0.056 4.056 4 C -0.149 4.149 5 C -0.050 4.050 6 C -0.223 4.223 7 C 0.166 3.834 8 O -0.211 6.211 9 C -0.391 4.391 10 H 0.108 0.892 11 C 0.065 3.935 12 N -0.875 5.875 13 Si 0.906 3.094 14 H -0.272 1.272 15 H -0.281 1.281 16 H -0.259 1.259 17 C -0.192 4.192 18 C -0.056 4.056 19 C 0.095 3.905 20 N -0.484 5.484 21 C 0.081 3.919 22 C -0.105 4.105 23 C -0.112 4.112 24 C -0.178 4.178 25 C -0.168 4.168 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.136 0.864 31 H 0.281 0.719 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.155 0.845 35 H 0.148 0.852 36 H 0.116 0.884 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.011 -18.161 4.136 20.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.043 4.043 3 C -0.058 4.058 4 C -0.151 4.151 5 C -0.069 4.069 6 C -0.242 4.242 7 C 0.113 3.887 8 O -0.115 6.115 9 C -0.466 4.466 10 H 0.126 0.874 11 C -0.139 4.139 12 N -0.512 5.512 13 Si 0.731 3.269 14 H -0.198 1.198 15 H -0.207 1.207 16 H -0.183 1.183 17 C -0.212 4.212 18 C -0.074 4.074 19 C -0.062 4.062 20 N -0.192 5.192 21 C -0.076 4.076 22 C -0.107 4.107 23 C -0.130 4.130 24 C -0.215 4.215 25 C -0.205 4.205 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.129 0.871 30 H 0.153 0.847 31 H 0.091 0.909 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.172 0.828 35 H 0.165 0.835 36 H 0.134 0.866 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.764 -17.787 4.174 20.263 hybrid contribution -0.929 0.635 0.239 1.150 sum 7.834 -17.152 4.413 19.366 Atomic orbital electron populations 1.20924 0.90329 1.03352 1.02811 1.20178 0.96697 0.91298 0.96153 1.19717 0.93926 0.92889 0.99277 1.18053 1.01840 0.93212 1.01992 1.20833 0.93654 0.95980 0.96408 1.21214 1.05135 0.94217 1.03612 1.19218 0.90361 0.85916 0.93193 1.83557 1.49535 1.30752 1.47645 1.20798 1.17981 1.00946 1.06903 0.87450 1.24490 0.95021 0.97547 0.96865 1.69641 1.26001 1.25202 1.30310 0.86174 0.78124 0.80694 0.81914 1.19758 1.20672 1.18274 1.20137 0.99520 0.98597 1.02897 1.20649 0.98006 0.91832 0.96959 1.22905 0.91071 0.95844 0.96382 1.67601 1.40913 0.98323 1.12316 1.22496 0.90918 0.96181 0.97970 1.19864 0.94428 0.93547 1.02832 1.20944 1.00025 0.87893 1.04185 1.23064 0.99998 0.98458 0.99931 1.23026 1.03571 1.02238 0.91677 0.90603 0.91485 0.90128 0.87068 0.84666 0.90869 0.86201 0.86650 0.82776 0.83459 0.86583 0.88360 0.88355 0.88372 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.38 8.14 36.01 0.29 -1.09 16 2 C -0.04 -0.47 5.91 -103.97 -0.61 -1.09 16 3 C -0.06 -0.82 5.48 -104.75 -0.57 -1.40 16 4 C -0.15 -2.42 4.81 -104.86 -0.50 -2.93 16 5 C -0.05 -0.87 7.98 -39.28 -0.31 -1.18 16 6 C -0.22 -4.54 9.15 -39.44 -0.36 -4.90 16 7 C 0.17 3.65 6.65 -39.02 -0.26 3.39 16 8 O -0.21 -5.34 8.58 0.25 0.00 -5.34 16 9 C -0.39 -10.63 9.94 30.88 0.31 -10.32 16 10 H 0.11 2.97 5.42 -52.48 -0.28 2.69 16 11 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 12 N -0.87 -24.59 13.96 55.48 0.77 -23.81 16 13 Si 0.91 21.04 28.62 -169.99 -4.86 16.17 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 17 C -0.19 -3.61 9.98 -39.45 -0.39 -4.00 16 18 C -0.06 -0.92 9.52 -39.28 -0.37 -1.29 16 19 C 0.09 1.36 10.70 -17.18 -0.18 1.17 16 20 N -0.48 -6.91 10.35 -12.96 -0.13 -7.04 16 21 C 0.08 1.00 10.47 -17.49 -0.18 0.82 16 22 C -0.10 -1.24 5.62 -104.53 -0.59 -1.83 16 23 C -0.11 -1.02 5.56 -91.77 -0.51 -1.53 16 24 C -0.18 -1.30 9.87 -26.73 -0.26 -1.57 16 25 C -0.17 -1.31 10.17 -26.73 -0.27 -1.58 16 26 H 0.08 0.84 7.58 -51.93 -0.39 0.44 16 27 H 0.07 0.65 6.20 -51.93 -0.32 0.33 16 28 H 0.08 1.06 6.58 -51.92 -0.34 0.72 16 29 H 0.11 1.70 6.92 -52.48 -0.36 1.34 16 30 H 0.14 2.90 5.62 -52.49 -0.30 2.61 16 31 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 32 H 0.12 2.09 8.06 -52.48 -0.42 1.67 16 33 H 0.12 1.59 8.05 -52.49 -0.42 1.17 16 34 H 0.15 2.00 8.05 -52.49 -0.42 1.58 16 35 H 0.15 1.46 6.03 -52.48 -0.32 1.14 16 36 H 0.12 0.99 6.37 -51.93 -0.33 0.65 16 37 H 0.10 0.69 6.20 -51.93 -0.32 0.36 16 38 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 332.07 15.07 5.00 5.00 Total: -1.00 -28.86 332.07 -8.75 -37.61 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -4.64 Total: 5.08 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: -4.89 Total: -27.66 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: 0.64 Total: -30.86 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: 0.00 Total: -5.34 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.86 Total: 16.17 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.86 -8.75 -37.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591443.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.004 kcal (2) G-P(sol) polarization free energy of solvation -28.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds