Wall clock time and date at job start Tue Mar 31 2020 08:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47215 * 2 1 4 4 H 1.09003 * 109.47175 * 303.09417 * 3 2 1 5 5 C 1.50701 * 109.47272 * 183.09750 * 3 2 1 6 6 H 1.07993 * 120.00438 * 240.00001 * 5 3 2 7 7 C 1.37879 * 120.00036 * 59.99873 * 5 3 2 8 8 N 1.31515 * 120.00028 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00111 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46971 * 59.99944 * 9 7 5 11 11 H 1.48500 * 109.47010 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.46906 * 299.99703 * 9 7 5 13 13 N 1.46895 * 109.47234 * 63.09540 * 3 2 1 14 14 C 1.46904 * 110.99902 * 205.04381 * 13 3 2 15 15 H 1.08999 * 109.46945 * 325.63063 * 14 13 3 16 16 C 1.50694 * 109.47037 * 85.63506 * 14 13 3 17 17 O 1.20824 * 120.00258 * 26.00492 * 16 14 13 18 18 O 1.34236 * 120.00138 * 206.00171 * 16 14 13 19 19 C 1.45187 * 117.00127 * 180.02562 * 18 16 14 20 20 C 1.50703 * 109.46961 * 205.63571 * 14 13 3 21 21 C 1.38266 * 119.98922 * 319.72615 * 20 14 13 22 22 C 1.38217 * 120.05426 * 179.72526 * 21 20 14 23 23 C 1.38220 * 120.02698 * 0.55137 * 22 21 20 24 24 C 1.38440 * 119.96785 * 359.72178 * 23 22 21 25 25 F 1.35103 * 120.02191 * 180.02562 * 24 23 22 26 26 C 1.38173 * 119.98680 * 139.99855 * 20 14 13 27 27 H 1.08999 * 109.46944 * 54.65080 * 1 2 3 28 28 H 1.08997 * 109.47239 * 174.65589 * 1 2 3 29 29 H 1.09000 * 109.46545 * 294.65162 * 1 2 3 30 30 H 1.08996 * 109.47521 * 120.00008 * 2 1 3 31 31 H 1.09001 * 109.47017 * 240.00069 * 2 1 3 32 32 H 0.97003 * 120.00036 * 180.02562 * 8 7 5 33 33 H 1.00902 * 111.00054 * 81.09341 * 13 3 2 34 34 H 1.09005 * 109.47331 * 180.02562 * 19 18 16 35 35 H 1.09002 * 109.47298 * 300.00117 * 19 18 16 36 36 H 1.09005 * 109.47649 * 60.00237 * 19 18 16 37 37 H 1.08008 * 119.96986 * 359.97438 * 21 20 14 38 38 H 1.08003 * 119.99012 * 180.26937 * 22 21 20 39 39 H 1.07999 * 120.01761 * 179.70324 * 23 22 21 40 40 H 1.07993 * 120.01600 * 0.02562 * 26 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6321 1.9721 -0.8610 5 6 3.5451 1.4432 -0.0768 6 1 4.1259 1.8964 0.7129 7 6 4.1807 0.8652 -1.1552 8 7 3.4734 0.3137 -2.1171 9 14 6.0463 0.8654 -1.2501 10 1 6.6016 0.1434 -0.0772 11 1 6.4785 0.1871 -2.4984 12 1 6.5417 2.2652 -1.2498 13 7 1.6124 2.1130 1.2350 14 6 1.5383 3.5679 1.0456 15 1 2.3220 3.8851 0.3576 16 6 0.1917 3.9322 0.4755 17 8 -0.7620 3.2176 0.6746 18 8 0.0517 5.0507 -0.2533 19 6 -1.2740 5.3391 -0.7703 20 6 1.7254 4.2574 2.3725 21 6 1.1357 3.7383 3.5103 22 6 1.3111 4.3665 4.7289 23 6 2.0669 5.5209 4.8096 24 6 2.6531 6.0447 3.6700 25 9 3.3925 7.1728 3.7477 26 6 2.4814 5.4113 2.4506 27 1 -0.3633 0.5946 -0.8382 28 1 -0.3633 -1.0232 -0.0957 29 1 -0.3632 0.4287 0.9340 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.9206 -0.0933 -2.8757 33 1 2.2230 1.8792 2.0035 34 1 -1.2478 6.2681 -1.3399 35 1 -1.5961 4.5245 -1.4190 36 1 -1.9734 5.4409 0.0596 37 1 0.5409 2.8390 3.4474 38 1 0.8536 3.9577 5.6177 39 1 2.1999 6.0143 5.7610 40 1 2.9379 5.8193 1.5610 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154702.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:26 Heat of formation + Delta-G solvation = -107.162170 kcal Electronic energy + Delta-G solvation = -24367.329329 eV Core-core repulsion = 20675.610111 eV Total energy + Delta-G solvation = -3691.719218 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.83946 -40.26861 -38.89141 -36.55878 -35.62315 -33.34631 -31.65812 -30.67225 -29.83749 -28.10101 -26.71666 -25.09510 -22.90874 -22.51903 -22.24154 -20.09332 -19.54387 -17.80334 -16.97486 -16.58666 -16.23271 -16.10625 -16.04163 -15.68642 -15.51117 -14.81792 -14.35885 -14.03021 -13.65114 -13.47029 -13.02003 -12.90936 -12.79900 -12.39143 -12.26231 -11.95896 -11.74486 -11.62567 -11.35784 -11.20236 -10.99713 -10.88432 -10.71658 -10.44027 -10.34745 -9.99757 -9.64974 -9.58993 -9.18555 -8.90303 -8.60605 -8.45096 -7.53793 -6.07637 -4.21801 1.13353 1.24553 2.70720 3.03626 3.24749 3.30403 3.32593 3.65442 4.24445 4.33770 4.67632 4.83195 5.05842 5.15515 5.22143 5.27287 5.30088 5.36480 5.38342 5.45102 5.70136 5.79429 5.88054 6.10249 6.15352 6.36242 6.42780 6.54753 6.57056 6.73569 6.76346 6.92677 7.02403 7.25261 7.32466 7.50649 7.70780 7.87832 8.00022 8.14550 8.30863 8.44858 8.87958 9.46770 10.93143 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.005910 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.237888 B = 4736.829443 C = 5811.544264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 C 0.217 3.783 4 H 0.031 0.969 5 C -0.554 4.554 6 H 0.056 0.944 7 C 0.071 3.929 8 N -0.882 5.882 9 Si 0.890 3.110 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.662 5.662 14 C 0.144 3.856 15 H 0.093 0.907 16 C 0.470 3.530 17 O -0.480 6.480 18 O -0.365 6.365 19 C 0.038 3.962 20 C -0.056 4.056 21 C -0.101 4.101 22 C -0.096 4.096 23 C -0.153 4.153 24 C 0.091 3.909 25 F -0.143 7.143 26 C -0.134 4.134 27 H 0.034 0.966 28 H 0.022 0.978 29 H 0.052 0.948 30 H 0.033 0.967 31 H 0.091 0.909 32 H 0.263 0.737 33 H 0.346 0.654 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.144 0.856 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.383 9.647 8.813 14.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.142 4.142 3 C 0.110 3.890 4 H 0.049 0.951 5 C -0.593 4.593 6 H 0.074 0.926 7 C -0.132 4.132 8 N -0.519 5.519 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.296 5.296 14 C 0.032 3.968 15 H 0.110 0.890 16 C 0.310 3.690 17 O -0.364 6.364 18 O -0.282 6.282 19 C -0.057 4.057 20 C -0.056 4.056 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.172 4.172 24 C 0.072 3.928 25 F -0.121 7.121 26 C -0.153 4.153 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.166 0.834 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.162 0.838 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.341 9.261 8.540 14.103 hybrid contribution 1.985 0.395 -0.306 2.047 sum -4.355 9.656 8.235 13.417 Atomic orbital electron populations 1.21660 0.98469 0.97958 1.00996 1.21469 0.92412 0.98492 1.01829 1.19267 0.92720 0.91524 0.85535 0.95140 1.21786 0.92207 1.38671 1.06645 0.92573 1.24915 0.98170 0.94711 0.95430 1.69873 1.35249 1.37118 1.09658 0.86692 0.85779 0.78296 0.77469 1.20191 1.21183 1.20260 1.60622 1.57047 1.01377 1.10522 1.19726 0.91580 0.92567 0.92922 0.88969 1.23768 0.91794 0.77974 0.75483 1.90597 1.40844 1.49549 1.55372 1.86514 1.34589 1.43162 1.63957 1.23151 0.82001 1.01659 0.98843 1.19501 0.96990 0.94477 0.94672 1.21306 0.98718 1.00535 0.91357 1.21013 0.97804 0.94511 0.98114 1.21144 1.00271 0.98227 0.97591 1.17595 0.95530 0.84982 0.94705 1.91487 1.74763 1.48775 1.97100 1.21097 1.00830 0.96177 0.97177 0.94712 0.95900 0.92854 0.94857 0.89112 0.92653 0.83421 0.88636 0.92029 0.92387 0.83823 0.84936 0.85020 0.84273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 9.71 37.16 0.36 -2.49 16 2 C -0.10 -2.45 5.44 -26.73 -0.15 -2.59 16 3 C 0.22 5.16 1.80 -68.87 -0.12 5.04 16 4 H 0.03 0.82 7.66 -51.93 -0.40 0.42 16 5 C -0.55 -14.22 8.27 -34.44 -0.28 -14.50 16 6 H 0.06 1.41 7.74 -52.49 -0.41 1.01 16 7 C 0.07 1.88 5.30 -17.82 -0.09 1.79 16 8 N -0.88 -24.27 11.30 55.43 0.63 -23.65 16 9 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 N -0.66 -13.18 4.55 -103.40 -0.47 -13.66 16 14 C 0.14 2.62 2.52 -70.02 -0.18 2.45 16 15 H 0.09 1.80 7.49 -51.93 -0.39 1.41 16 16 C 0.47 8.79 6.82 36.00 0.25 9.03 16 17 O -0.48 -9.79 16.38 -18.75 -0.31 -10.10 16 18 O -0.37 -6.13 10.56 -39.27 -0.41 -6.55 16 19 C 0.04 0.49 10.55 101.05 1.07 1.55 16 20 C -0.06 -0.86 4.69 -104.63 -0.49 -1.35 16 21 C -0.10 -1.40 8.99 -39.58 -0.36 -1.75 16 22 C -0.10 -1.11 10.04 -39.60 -0.40 -1.50 16 23 C -0.15 -1.78 10.03 -39.51 -0.40 -2.18 16 24 C 0.09 1.23 7.30 -39.42 -0.29 0.94 16 25 F -0.14 -1.96 17.27 2.25 0.04 -1.92 16 26 C -0.13 -1.93 9.65 -39.52 -0.38 -2.31 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 1.12 7.85 -51.93 -0.41 0.71 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.09 2.39 5.99 -51.93 -0.31 2.08 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.35 6.62 7.66 -39.29 -0.30 6.32 16 34 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 36 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 37 H 0.14 2.05 7.73 -52.48 -0.41 1.64 16 38 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 40 H 0.14 1.91 8.04 -52.49 -0.42 1.49 16 LS Contribution 345.48 15.07 5.21 5.21 Total: -1.00 -28.67 345.48 -7.36 -36.03 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -5.56 Total: 7.00 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -1.46 Total: -7.88 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.16 Total: -37.30 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.72 Total: -16.65 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.67 -7.36 -36.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154702.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.129 kcal (2) G-P(sol) polarization free energy of solvation -28.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds