Wall clock time and date at job start Tue Mar 31 2020 08:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47215 * 2 1 4 4 H 1.09003 * 109.47175 * 303.09417 * 3 2 1 5 5 C 1.50701 * 109.47272 * 183.09750 * 3 2 1 6 6 H 1.07993 * 120.00438 * 240.00001 * 5 3 2 7 7 C 1.37879 * 120.00036 * 59.99873 * 5 3 2 8 8 N 1.31515 * 120.00028 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00111 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.46971 * 59.99944 * 9 7 5 11 11 H 1.48500 * 109.47010 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.46906 * 299.99703 * 9 7 5 13 13 N 1.46895 * 109.47234 * 63.09540 * 3 2 1 14 14 C 1.46904 * 110.99902 * 205.04381 * 13 3 2 15 15 H 1.08999 * 109.46945 * 325.63063 * 14 13 3 16 16 C 1.50694 * 109.47037 * 85.63506 * 14 13 3 17 17 O 1.20824 * 120.00258 * 26.00492 * 16 14 13 18 18 O 1.34236 * 120.00138 * 206.00171 * 16 14 13 19 19 C 1.45187 * 117.00127 * 180.02562 * 18 16 14 20 20 C 1.50703 * 109.46961 * 205.63571 * 14 13 3 21 21 C 1.38266 * 119.98922 * 319.72615 * 20 14 13 22 22 C 1.38217 * 120.05426 * 179.72526 * 21 20 14 23 23 C 1.38220 * 120.02698 * 0.55137 * 22 21 20 24 24 C 1.38440 * 119.96785 * 359.72178 * 23 22 21 25 25 F 1.35103 * 120.02191 * 180.02562 * 24 23 22 26 26 C 1.38173 * 119.98680 * 139.99855 * 20 14 13 27 27 H 1.08999 * 109.46944 * 54.65080 * 1 2 3 28 28 H 1.08997 * 109.47239 * 174.65589 * 1 2 3 29 29 H 1.09000 * 109.46545 * 294.65162 * 1 2 3 30 30 H 1.08996 * 109.47521 * 120.00008 * 2 1 3 31 31 H 1.09001 * 109.47017 * 240.00069 * 2 1 3 32 32 H 0.97003 * 120.00036 * 180.02562 * 8 7 5 33 33 H 1.00902 * 111.00054 * 81.09341 * 13 3 2 34 34 H 1.09005 * 109.47331 * 180.02562 * 19 18 16 35 35 H 1.09002 * 109.47298 * 300.00117 * 19 18 16 36 36 H 1.09005 * 109.47649 * 60.00237 * 19 18 16 37 37 H 1.08008 * 119.96986 * 359.97438 * 21 20 14 38 38 H 1.08003 * 119.99012 * 180.26937 * 22 21 20 39 39 H 1.07999 * 120.01761 * 179.70324 * 23 22 21 40 40 H 1.07993 * 120.01600 * 0.02562 * 26 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6321 1.9721 -0.8610 5 6 3.5451 1.4432 -0.0768 6 1 4.1259 1.8964 0.7129 7 6 4.1807 0.8652 -1.1552 8 7 3.4734 0.3137 -2.1171 9 14 6.0463 0.8654 -1.2501 10 1 6.6016 0.1434 -0.0772 11 1 6.4785 0.1871 -2.4984 12 1 6.5417 2.2652 -1.2498 13 7 1.6124 2.1130 1.2350 14 6 1.5383 3.5679 1.0456 15 1 2.3220 3.8851 0.3576 16 6 0.1917 3.9322 0.4755 17 8 -0.7620 3.2176 0.6746 18 8 0.0517 5.0507 -0.2533 19 6 -1.2740 5.3391 -0.7703 20 6 1.7254 4.2574 2.3725 21 6 1.1357 3.7383 3.5103 22 6 1.3111 4.3665 4.7289 23 6 2.0669 5.5209 4.8096 24 6 2.6531 6.0447 3.6700 25 9 3.3925 7.1728 3.7477 26 6 2.4814 5.4113 2.4506 27 1 -0.3633 0.5946 -0.8382 28 1 -0.3633 -1.0232 -0.0957 29 1 -0.3632 0.4287 0.9340 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.9206 -0.0933 -2.8757 33 1 2.2230 1.8792 2.0035 34 1 -1.2478 6.2681 -1.3399 35 1 -1.5961 4.5245 -1.4190 36 1 -1.9734 5.4409 0.0596 37 1 0.5409 2.8390 3.4474 38 1 0.8536 3.9577 5.6177 39 1 2.1999 6.0143 5.7610 40 1 2.9379 5.8193 1.5610 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154702.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:25 Heat of formation + Delta-G solvation = -122.383692 kcal Electronic energy + Delta-G solvation = -24367.989383 eV Core-core repulsion = 20675.610111 eV Total energy + Delta-G solvation = -3692.379272 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.89075 -41.65693 -40.04269 -38.12064 -37.17838 -34.96060 -33.48730 -31.87065 -31.14632 -29.37517 -28.36172 -26.63600 -24.60341 -23.74016 -23.40666 -21.54834 -21.31396 -19.19643 -18.45901 -18.22274 -17.58922 -17.32056 -17.12199 -16.98440 -16.63551 -16.57104 -15.79644 -15.53020 -15.05824 -14.69899 -14.54056 -14.33427 -14.15612 -13.89325 -13.46828 -13.32104 -13.18651 -13.07270 -12.96677 -12.84568 -12.64590 -12.57297 -12.15117 -12.07265 -11.74957 -11.58436 -11.47260 -11.45287 -11.06388 -10.48427 -9.98673 -9.67734 -9.26618 -8.08411 -6.30449 0.07842 0.21150 1.24770 1.41113 1.41865 1.48971 1.74692 2.39940 2.59669 3.12202 3.16028 3.53948 3.61137 3.90032 3.97450 4.11255 4.25887 4.30255 4.31574 4.39842 4.42408 4.57516 4.66197 4.74873 4.81716 4.92335 5.05790 5.10765 5.12395 5.34126 5.35843 5.41847 5.44126 5.51630 5.59455 5.74340 5.90658 6.03963 6.06415 6.23587 6.63831 6.84454 6.93273 7.41594 8.89871 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.005910 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.237888 B = 4736.829443 C = 5811.544264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.099 4.099 3 C 0.228 3.772 4 H -0.008 1.008 5 C -0.563 4.563 6 H 0.058 0.942 7 C 0.024 3.976 8 N -0.910 5.910 9 Si 0.950 3.050 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.653 5.653 14 C 0.147 3.853 15 H 0.072 0.928 16 C 0.470 3.530 17 O -0.503 6.503 18 O -0.373 6.373 19 C 0.030 3.970 20 C -0.072 4.072 21 C -0.107 4.107 22 C -0.083 4.083 23 C -0.140 4.140 24 C 0.082 3.918 25 F -0.145 7.145 26 C -0.144 4.144 27 H 0.017 0.983 28 H 0.042 0.958 29 H 0.057 0.943 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.263 0.737 33 H 0.351 0.649 34 H 0.132 0.868 35 H 0.053 0.947 36 H 0.067 0.933 37 H 0.138 0.862 38 H 0.169 0.831 39 H 0.164 0.836 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.287 10.528 10.963 16.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.138 4.138 3 C 0.119 3.881 4 H 0.010 0.990 5 C -0.602 4.602 6 H 0.076 0.924 7 C -0.177 4.177 8 N -0.549 5.549 9 Si 0.776 3.224 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.286 5.286 14 C 0.034 3.966 15 H 0.089 0.911 16 C 0.311 3.689 17 O -0.389 6.389 18 O -0.289 6.289 19 C -0.063 4.063 20 C -0.072 4.072 21 C -0.125 4.125 22 C -0.101 4.101 23 C -0.158 4.158 24 C 0.063 3.937 25 F -0.124 7.124 26 C -0.164 4.164 27 H 0.036 0.964 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.171 0.829 34 H 0.150 0.850 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.156 0.844 38 H 0.187 0.813 39 H 0.182 0.818 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.245 10.166 10.699 16.025 hybrid contribution 1.898 0.210 -0.960 2.138 sum -4.346 10.376 9.739 14.879 Atomic orbital electron populations 1.21488 0.96679 0.98922 1.00417 1.21340 0.93916 0.98019 1.00516 1.18963 0.91742 0.91556 0.85810 0.98965 1.22092 0.93303 1.38150 1.06620 0.92359 1.25648 1.02227 0.94559 0.95236 1.70009 1.36762 1.37948 1.10142 0.85736 0.80906 0.78300 0.77463 1.19524 1.21121 1.19892 1.60471 1.56637 1.02643 1.08879 1.19634 0.90924 0.91523 0.94470 0.91053 1.23822 0.91642 0.78172 0.75268 1.90570 1.41521 1.50365 1.56421 1.86492 1.36832 1.42175 1.63418 1.23508 0.80422 1.03037 0.99372 1.19271 0.98990 0.95321 0.93661 1.21357 0.98667 1.00629 0.91898 1.21362 0.96760 0.93799 0.98182 1.21521 0.98486 0.97732 0.98107 1.17732 0.95968 0.85039 0.94970 1.91481 1.74914 1.48909 1.97097 1.21084 1.01119 0.96250 0.97918 0.96362 0.93865 0.92432 0.94493 0.91908 0.92793 0.82885 0.84958 0.92827 0.91442 0.84417 0.81320 0.81812 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.06 9.71 71.98 0.70 -4.36 16 2 C -0.10 -4.78 5.44 30.59 0.17 -4.62 16 3 C 0.23 11.18 1.80 44.17 0.08 11.26 16 4 H -0.01 -0.43 7.66 -2.39 -0.02 -0.45 16 5 C -0.56 -29.41 8.27 25.60 0.21 -29.20 16 6 H 0.06 2.96 7.74 -2.91 -0.02 2.93 16 7 C 0.02 1.29 5.30 84.66 0.45 1.73 16 8 N -0.91 -51.39 11.30 21.45 0.24 -51.15 16 9 Si 0.95 42.40 29.54 68.60 2.03 44.43 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 13 N -0.65 -26.53 4.55 -481.04 -2.19 -28.72 16 14 C 0.15 5.49 2.52 43.42 0.11 5.60 16 15 H 0.07 2.94 7.49 -2.39 -0.02 2.93 16 16 C 0.47 17.98 6.82 71.23 0.49 18.46 16 17 O -0.50 -20.85 16.38 21.97 0.36 -20.49 16 18 O -0.37 -12.65 10.56 -51.47 -0.54 -13.19 16 19 C 0.03 0.75 10.55 113.37 1.20 1.94 16 20 C -0.07 -2.20 4.69 -19.87 -0.09 -2.29 16 21 C -0.11 -2.81 8.99 22.27 0.20 -2.61 16 22 C -0.08 -1.62 10.04 22.26 0.22 -1.40 16 23 C -0.14 -2.76 10.03 22.31 0.22 -2.53 16 24 C 0.08 2.06 7.30 22.38 0.16 2.22 16 25 F -0.15 -3.75 17.27 44.97 0.78 -2.97 16 26 C -0.14 -4.12 9.65 22.31 0.22 -3.91 16 27 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 2.41 7.85 -2.39 -0.02 2.39 16 30 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.06 3.40 5.99 -2.39 -0.01 3.39 16 32 H 0.26 14.21 8.31 -92.71 -0.77 13.43 16 33 H 0.35 13.53 7.66 -89.69 -0.69 12.84 16 34 H 0.13 2.30 8.14 -2.38 -0.02 2.28 16 35 H 0.05 1.43 8.13 -2.39 -0.02 1.41 16 36 H 0.07 1.57 8.13 -2.38 -0.02 1.55 16 37 H 0.14 3.77 7.73 -2.91 -0.02 3.75 16 38 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 40 H 0.14 3.82 8.04 -2.91 -0.02 3.80 16 Total: -1.00 -62.76 345.48 5.36 -57.40 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.36 Total: 24.39 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 4.33 Total: -9.69 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -1.95 Total: -79.87 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -0.18 Total: -33.68 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.78 Total: -2.97 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -62.76 5.36 -57.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154702.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.988 kcal (2) G-P(sol) polarization free energy of solvation -62.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds