Wall clock time and date at job start Tue Mar 31 2020 08:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47036 * 2 1 4 4 H 1.09002 * 109.47457 * 57.59831 * 3 2 1 5 5 C 1.50705 * 109.47207 * 177.59836 * 3 2 1 6 6 H 1.08000 * 120.00112 * 120.00652 * 5 3 2 7 7 C 1.37871 * 119.99849 * 299.99756 * 5 3 2 8 8 N 1.31519 * 119.99944 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00015 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47429 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47274 * 120.00536 * 9 7 5 12 12 H 1.48503 * 109.47206 * 240.00003 * 9 7 5 13 13 N 1.46900 * 109.47163 * 297.59720 * 3 2 1 14 14 C 1.46905 * 111.00084 * 156.40355 * 13 3 2 15 15 H 1.08997 * 109.47091 * 32.26668 * 14 13 3 16 16 C 1.50697 * 109.46907 * 272.26850 * 14 13 3 17 17 O 1.20828 * 120.00396 * 334.84464 * 16 14 13 18 18 O 1.34229 * 119.99891 * 154.84547 * 16 14 13 19 19 C 1.45206 * 116.99894 * 179.97438 * 18 16 14 20 20 C 1.50700 * 109.47062 * 152.26622 * 14 13 3 21 21 C 1.38271 * 119.98489 * 219.99778 * 20 14 13 22 22 C 1.38220 * 120.04694 * 180.02562 * 21 20 14 23 23 C 1.38217 * 120.02773 * 0.02562 * 22 21 20 24 24 C 1.38433 * 119.97664 * 359.97438 * 23 22 21 25 25 F 1.35103 * 120.02801 * 180.02562 * 24 23 22 26 26 C 1.38172 * 119.98735 * 39.72801 * 20 14 13 27 27 H 1.09005 * 109.47172 * 186.23144 * 1 2 3 28 28 H 1.09001 * 109.47432 * 66.23666 * 1 2 3 29 29 H 1.08994 * 109.47151 * 306.23015 * 1 2 3 30 30 H 1.08997 * 109.47246 * 120.00432 * 2 1 3 31 31 H 1.09009 * 109.47172 * 240.00385 * 2 1 3 32 32 H 0.96999 * 119.99550 * 179.97438 * 8 7 5 33 33 H 1.00896 * 111.00356 * 32.44954 * 13 3 2 34 34 H 1.09001 * 109.46942 * 60.00831 * 19 18 16 35 35 H 1.09001 * 109.46741 * 180.02562 * 19 18 16 36 36 H 1.08994 * 109.47714 * 300.00181 * 19 18 16 37 37 H 1.07997 * 119.97624 * 0.02562 * 21 20 14 38 38 H 1.08007 * 119.98658 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.01171 * 180.02562 * 23 22 21 40 40 H 1.08007 * 120.01591 * 359.97438 * 26 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6419 1.9686 0.8677 5 6 3.5458 1.4429 0.0595 6 1 4.1175 1.8995 -0.7349 7 6 4.1936 0.8607 1.1283 8 7 3.4974 0.3044 2.0955 9 14 6.0601 0.8618 1.2025 10 1 6.6029 1.5459 0.0014 11 1 6.5065 1.5787 2.4240 12 1 6.5549 -0.5378 1.2415 13 7 1.5982 2.1180 -1.2274 14 6 1.5592 3.5747 -1.0417 15 1 2.3415 3.8732 -0.3439 16 6 0.2150 3.9749 -0.4904 17 8 -0.7512 3.2767 -0.6877 18 8 0.0910 5.1070 0.2200 19 6 -1.2335 5.4300 0.7197 20 6 1.7816 4.2562 -2.3673 21 6 2.5687 5.3909 -2.4375 22 6 2.7731 6.0173 -3.6525 23 6 2.1904 5.5103 -4.7987 24 6 1.4022 4.3744 -4.7297 25 9 0.8326 3.8777 -5.8495 26 6 1.2035 3.7438 -3.5129 27 1 -0.3634 -1.0216 0.1116 28 1 -0.3634 0.4141 -0.9405 29 1 -0.3633 0.6073 0.8289 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 3.9532 -0.1055 2.8472 33 1 0.7017 1.7680 -1.5303 34 1 -1.5781 4.6323 1.3777 35 1 -1.1939 6.3674 1.2745 36 1 -1.9229 5.5332 -0.1182 37 1 3.0240 5.7880 -1.5423 38 1 3.3884 6.9033 -3.7063 39 1 2.3507 5.9998 -5.7481 40 1 0.5926 2.8547 -3.4586 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:33 Heat of formation + Delta-G solvation = -107.395568 kcal Electronic energy + Delta-G solvation = -24415.510735 eV Core-core repulsion = 20723.781396 eV Total energy + Delta-G solvation = -3691.729339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.74082 -40.50346 -38.82861 -36.82798 -35.75799 -33.31308 -31.74767 -30.44810 -29.97098 -28.10634 -26.82904 -25.25293 -22.89877 -22.48535 -22.21008 -20.21337 -19.63753 -17.65668 -17.24452 -16.72848 -16.25500 -16.07928 -16.06401 -15.80618 -15.42436 -14.82138 -14.42311 -13.95236 -13.74173 -13.49764 -13.24137 -12.96206 -12.78450 -12.35605 -12.20396 -12.08736 -11.88380 -11.71269 -11.41872 -11.21650 -10.99708 -10.84937 -10.63949 -10.62181 -10.40937 -10.04144 -9.82172 -9.67742 -9.23203 -8.79999 -8.53524 -8.43755 -7.64753 -6.04241 -4.09506 1.22938 1.35028 2.45981 2.97016 3.28137 3.36734 3.41509 3.72993 4.35511 4.38984 4.73414 4.85863 5.01973 5.07864 5.19282 5.23739 5.27616 5.28328 5.46149 5.52910 5.60839 5.76289 5.93339 6.15661 6.19105 6.22027 6.23501 6.38354 6.44133 6.55516 6.65315 6.87463 6.96344 7.00674 7.05906 7.32386 7.68465 7.79819 7.91955 8.08332 8.25297 8.53397 8.98335 9.56183 11.01552 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011998 B = 0.005764 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.143586 B = 4856.622385 C = 5636.712425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.215 3.785 4 H 0.004 0.996 5 C -0.500 4.500 6 H 0.066 0.934 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.652 5.652 14 C 0.141 3.859 15 H 0.130 0.870 16 C 0.442 3.558 17 O -0.507 6.507 18 O -0.357 6.357 19 C 0.033 3.967 20 C -0.032 4.032 21 C -0.111 4.111 22 C -0.095 4.095 23 C -0.157 4.157 24 C 0.090 3.910 25 F -0.144 7.144 26 C -0.121 4.121 27 H 0.037 0.963 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.101 0.899 31 H 0.044 0.956 32 H 0.260 0.740 33 H 0.337 0.663 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.143 11.362 -6.978 14.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C 0.109 3.891 4 H 0.022 0.978 5 C -0.539 4.539 6 H 0.084 0.916 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.286 5.286 14 C 0.027 3.973 15 H 0.147 0.853 16 C 0.283 3.717 17 O -0.393 6.393 18 O -0.273 6.273 19 C -0.061 4.061 20 C -0.033 4.033 21 C -0.130 4.130 22 C -0.114 4.114 23 C -0.176 4.176 24 C 0.071 3.929 25 F -0.122 7.122 26 C -0.140 4.140 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.159 0.841 34 H 0.080 0.920 35 H 0.116 0.884 36 H 0.077 0.923 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.843 11.017 -7.159 14.003 hybrid contribution -0.165 -0.191 0.585 0.637 sum -5.008 10.826 -6.574 13.620 Atomic orbital electron populations 1.21870 0.99190 0.99638 1.00043 1.21750 0.91438 0.99667 1.03361 1.19330 0.95515 0.90317 0.83961 0.97845 1.21219 0.90455 1.36435 1.05771 0.91585 1.24958 0.98454 0.95358 0.95547 1.69889 1.35032 1.38201 1.10139 0.86470 0.85517 0.77730 0.77891 1.19626 1.21169 1.21089 1.61149 1.33022 0.98061 1.36358 1.20374 0.91206 0.91998 0.93690 0.85263 1.25457 0.93289 0.78140 0.74851 1.90608 1.40450 1.52083 1.56203 1.86581 1.34482 1.41708 1.64498 1.23209 0.82205 1.01503 0.99171 1.19324 0.96336 0.94256 0.93390 1.21154 0.98233 0.95042 0.98555 1.20909 0.99039 0.99834 0.91572 1.21089 0.99774 0.96613 1.00106 1.17655 0.97560 0.95145 0.82512 1.91479 1.83159 1.87241 1.50340 1.20992 1.01664 1.00642 0.90724 0.94355 0.94142 0.94047 0.88120 0.93701 0.92982 0.84093 0.92034 0.88445 0.92295 0.84784 0.85013 0.85129 0.84500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.56 37.16 0.36 -2.70 16 2 C -0.12 -2.91 5.38 -26.74 -0.14 -3.05 16 3 C 0.22 5.19 1.88 -68.86 -0.13 5.07 16 4 H 0.00 0.10 7.75 -51.93 -0.40 -0.30 16 5 C -0.50 -13.15 8.43 -34.44 -0.29 -13.44 16 6 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 8 N -0.89 -24.71 11.30 55.43 0.63 -24.09 16 9 Si 0.90 20.81 29.54 -169.99 -5.02 15.78 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.65 -13.52 5.42 -103.39 -0.56 -14.08 16 14 C 0.14 2.58 2.50 -70.01 -0.18 2.40 16 15 H 0.13 2.47 7.42 -51.93 -0.39 2.08 16 16 C 0.44 8.00 6.94 36.00 0.25 8.25 16 17 O -0.51 -9.93 15.54 -18.75 -0.29 -10.22 16 18 O -0.36 -5.72 10.57 -39.25 -0.41 -6.14 16 19 C 0.03 0.41 10.56 101.05 1.07 1.48 16 20 C -0.03 -0.51 4.94 -104.63 -0.52 -1.03 16 21 C -0.11 -1.50 9.67 -39.58 -0.38 -1.89 16 22 C -0.10 -1.10 10.04 -39.60 -0.40 -1.50 16 23 C -0.16 -1.92 10.03 -39.52 -0.40 -2.32 16 24 C 0.09 1.32 7.30 -39.42 -0.29 1.03 16 25 F -0.14 -2.14 17.27 2.25 0.04 -2.10 16 26 C -0.12 -1.94 9.30 -39.51 -0.37 -2.30 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.78 6.56 -51.93 -0.34 0.44 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.10 2.63 6.01 -51.93 -0.31 2.32 16 31 H 0.04 1.05 8.14 -51.92 -0.42 0.63 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.34 6.83 4.67 -39.29 -0.18 6.65 16 34 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 37 H 0.13 1.59 8.04 -52.49 -0.42 1.17 16 38 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 39 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.14 2.25 7.33 -52.48 -0.38 1.87 16 LS Contribution 341.63 15.07 5.15 5.15 Total: -1.00 -29.07 341.63 -7.34 -36.41 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.36 Total: 7.82 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -1.51 Total: -8.54 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: 0.07 Total: -38.16 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.71 Total: -16.36 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.07 -7.34 -36.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.988 kcal (2) G-P(sol) polarization free energy of solvation -29.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds