Wall clock time and date at job start Tue Mar 31 2020 08:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47036 * 2 1 4 4 H 1.09002 * 109.47457 * 57.59831 * 3 2 1 5 5 C 1.50705 * 109.47207 * 177.59836 * 3 2 1 6 6 H 1.08000 * 120.00112 * 120.00652 * 5 3 2 7 7 C 1.37871 * 119.99849 * 299.99756 * 5 3 2 8 8 N 1.31519 * 119.99944 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00015 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47429 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47274 * 120.00536 * 9 7 5 12 12 H 1.48503 * 109.47206 * 240.00003 * 9 7 5 13 13 N 1.46900 * 109.47163 * 297.59720 * 3 2 1 14 14 C 1.46905 * 111.00084 * 156.40355 * 13 3 2 15 15 H 1.08997 * 109.47091 * 32.26668 * 14 13 3 16 16 C 1.50697 * 109.46907 * 272.26850 * 14 13 3 17 17 O 1.20828 * 120.00396 * 334.84464 * 16 14 13 18 18 O 1.34229 * 119.99891 * 154.84547 * 16 14 13 19 19 C 1.45206 * 116.99894 * 179.97438 * 18 16 14 20 20 C 1.50700 * 109.47062 * 152.26622 * 14 13 3 21 21 C 1.38271 * 119.98489 * 219.99778 * 20 14 13 22 22 C 1.38220 * 120.04694 * 180.02562 * 21 20 14 23 23 C 1.38217 * 120.02773 * 0.02562 * 22 21 20 24 24 C 1.38433 * 119.97664 * 359.97438 * 23 22 21 25 25 F 1.35103 * 120.02801 * 180.02562 * 24 23 22 26 26 C 1.38172 * 119.98735 * 39.72801 * 20 14 13 27 27 H 1.09005 * 109.47172 * 186.23144 * 1 2 3 28 28 H 1.09001 * 109.47432 * 66.23666 * 1 2 3 29 29 H 1.08994 * 109.47151 * 306.23015 * 1 2 3 30 30 H 1.08997 * 109.47246 * 120.00432 * 2 1 3 31 31 H 1.09009 * 109.47172 * 240.00385 * 2 1 3 32 32 H 0.96999 * 119.99550 * 179.97438 * 8 7 5 33 33 H 1.00896 * 111.00356 * 32.44954 * 13 3 2 34 34 H 1.09001 * 109.46942 * 60.00831 * 19 18 16 35 35 H 1.09001 * 109.46741 * 180.02562 * 19 18 16 36 36 H 1.08994 * 109.47714 * 300.00181 * 19 18 16 37 37 H 1.07997 * 119.97624 * 0.02562 * 21 20 14 38 38 H 1.08007 * 119.98658 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.01171 * 180.02562 * 23 22 21 40 40 H 1.08007 * 120.01591 * 359.97438 * 26 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6419 1.9686 0.8677 5 6 3.5458 1.4429 0.0595 6 1 4.1175 1.8995 -0.7349 7 6 4.1936 0.8607 1.1283 8 7 3.4974 0.3044 2.0955 9 14 6.0601 0.8618 1.2025 10 1 6.6029 1.5459 0.0014 11 1 6.5065 1.5787 2.4240 12 1 6.5549 -0.5378 1.2415 13 7 1.5982 2.1180 -1.2274 14 6 1.5592 3.5747 -1.0417 15 1 2.3415 3.8732 -0.3439 16 6 0.2150 3.9749 -0.4904 17 8 -0.7512 3.2767 -0.6877 18 8 0.0910 5.1070 0.2200 19 6 -1.2335 5.4300 0.7197 20 6 1.7816 4.2562 -2.3673 21 6 2.5687 5.3909 -2.4375 22 6 2.7731 6.0173 -3.6525 23 6 2.1904 5.5103 -4.7987 24 6 1.4022 4.3744 -4.7297 25 9 0.8326 3.8777 -5.8495 26 6 1.2035 3.7438 -3.5129 27 1 -0.3634 -1.0216 0.1116 28 1 -0.3634 0.4141 -0.9405 29 1 -0.3633 0.6073 0.8289 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 3.9532 -0.1055 2.8472 33 1 0.7017 1.7680 -1.5303 34 1 -1.5781 4.6323 1.3777 35 1 -1.1939 6.3674 1.2745 36 1 -1.9229 5.5332 -0.1182 37 1 3.0240 5.7880 -1.5423 38 1 3.3884 6.9033 -3.7063 39 1 2.3507 5.9998 -5.7481 40 1 0.5926 2.8547 -3.4586 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154786.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:09:33 Heat of formation + Delta-G solvation = -123.319714 kcal Electronic energy + Delta-G solvation = -24416.201258 eV Core-core repulsion = 20723.781396 eV Total energy + Delta-G solvation = -3692.419861 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.86660 -41.88728 -39.97363 -38.34178 -37.31379 -34.93132 -33.59259 -31.55729 -31.36703 -29.35218 -28.53990 -26.73137 -24.67620 -23.66969 -23.39034 -21.60548 -21.44309 -19.02591 -18.53144 -18.35224 -17.91025 -17.29932 -17.24158 -17.03057 -16.66194 -16.55191 -15.77749 -15.70081 -14.98005 -14.76240 -14.52655 -14.40542 -14.30682 -13.88101 -13.59362 -13.43485 -13.24171 -13.11299 -12.88393 -12.77603 -12.59107 -12.46667 -12.18580 -12.00875 -11.87666 -11.83481 -11.59333 -11.53613 -11.11257 -10.47058 -9.90885 -9.63934 -9.39905 -8.08366 -6.20694 0.13734 0.27685 1.04293 1.43550 1.46583 1.58061 1.70868 2.44756 2.63878 3.18306 3.24728 3.34588 3.66720 3.81182 3.94606 4.16366 4.25486 4.26820 4.28514 4.34886 4.41660 4.49790 4.52033 4.62774 4.64826 4.84750 4.99011 5.09931 5.14211 5.18263 5.23499 5.25794 5.36195 5.47102 5.54928 5.71509 5.79720 5.95564 6.16299 6.30428 6.60818 6.69571 6.91515 7.48497 8.96488 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.011998 B = 0.005764 C = 0.004966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.143586 B = 4856.622385 C = 5636.712425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.119 4.119 3 C 0.225 3.775 4 H -0.030 1.030 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.013 3.987 8 N -0.920 5.920 9 Si 0.958 3.042 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.284 1.284 13 N -0.652 5.652 14 C 0.142 3.858 15 H 0.117 0.883 16 C 0.444 3.556 17 O -0.528 6.528 18 O -0.360 6.360 19 C 0.026 3.974 20 C -0.052 4.052 21 C -0.114 4.114 22 C -0.081 4.081 23 C -0.145 4.145 24 C 0.075 3.925 25 F -0.149 7.149 26 C -0.140 4.140 27 H 0.059 0.941 28 H 0.049 0.951 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.261 0.739 33 H 0.338 0.662 34 H 0.053 0.947 35 H 0.137 0.863 36 H 0.065 0.935 37 H 0.149 0.851 38 H 0.174 0.826 39 H 0.163 0.837 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.243 13.461 -8.042 16.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C 0.117 3.883 4 H -0.012 1.012 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.186 4.186 8 N -0.560 5.560 9 Si 0.784 3.216 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.210 1.210 13 N -0.285 5.285 14 C 0.029 3.971 15 H 0.134 0.866 16 C 0.285 3.715 17 O -0.417 6.417 18 O -0.275 6.275 19 C -0.068 4.068 20 C -0.053 4.053 21 C -0.133 4.133 22 C -0.099 4.099 23 C -0.164 4.164 24 C 0.056 3.944 25 F -0.128 7.128 26 C -0.159 4.159 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.160 0.840 34 H 0.072 0.928 35 H 0.155 0.845 36 H 0.084 0.916 37 H 0.167 0.833 38 H 0.192 0.808 39 H 0.180 0.820 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.951 13.142 -8.230 16.002 hybrid contribution -0.494 -0.744 0.913 1.277 sum -4.445 12.398 -7.317 15.067 Atomic orbital electron populations 1.21716 0.96796 1.00830 1.00031 1.21603 0.93559 0.98959 1.01698 1.19062 0.94575 0.90584 0.84070 1.01207 1.21431 0.91610 1.36324 1.05647 0.92215 1.25690 1.02634 0.95038 0.95225 1.70018 1.36600 1.38796 1.10595 0.85499 0.80443 0.77611 0.78044 1.19004 1.20640 1.21020 1.61045 1.33214 0.99740 1.34524 1.20287 0.91033 0.90610 0.95152 0.86556 1.25307 0.92900 0.78532 0.74725 1.90585 1.41055 1.52886 1.57167 1.86545 1.36622 1.40476 1.63832 1.23570 0.80596 1.02982 0.99606 1.19207 0.98415 0.95745 0.91938 1.21432 0.97370 0.94153 1.00321 1.21359 0.98106 1.00311 0.90098 1.21495 0.97858 0.95169 1.01843 1.17838 0.98529 0.96169 0.81818 1.91462 1.83424 1.87514 1.50381 1.20913 1.02478 1.00788 0.91719 0.92215 0.93185 0.95209 0.90829 0.94080 0.92973 0.84030 0.92818 0.84540 0.91612 0.83324 0.80815 0.81958 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.63 9.56 71.98 0.69 -4.94 16 2 C -0.12 -5.80 5.38 30.59 0.16 -5.63 16 3 C 0.22 11.25 1.88 44.17 0.08 11.33 16 4 H -0.03 -1.65 7.75 -2.39 -0.02 -1.67 16 5 C -0.51 -27.52 8.43 25.60 0.22 -27.31 16 6 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 7 C 0.01 0.69 5.30 84.65 0.45 1.14 16 8 N -0.92 -52.06 11.30 21.45 0.24 -51.81 16 9 Si 0.96 42.88 29.54 68.60 2.03 44.91 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 N -0.65 -27.98 5.42 -481.03 -2.61 -30.59 16 14 C 0.14 5.35 2.50 43.42 0.11 5.46 16 15 H 0.12 4.61 7.42 -2.39 -0.02 4.59 16 16 C 0.44 16.41 6.94 71.24 0.49 16.90 16 17 O -0.53 -21.23 15.54 21.96 0.34 -20.89 16 18 O -0.36 -11.42 10.57 -51.40 -0.54 -11.96 16 19 C 0.03 0.60 10.56 113.37 1.20 1.80 16 20 C -0.05 -1.67 4.94 -19.87 -0.10 -1.76 16 21 C -0.11 -2.86 9.67 22.27 0.22 -2.65 16 22 C -0.08 -1.56 10.04 22.26 0.22 -1.34 16 23 C -0.15 -3.07 10.03 22.31 0.22 -2.85 16 24 C 0.08 2.12 7.30 22.38 0.16 2.28 16 25 F -0.15 -4.33 17.27 44.97 0.78 -3.55 16 26 C -0.14 -4.50 9.30 22.31 0.21 -4.30 16 27 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 28 H 0.05 1.95 6.56 -2.39 -0.02 1.94 16 29 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 3.99 6.01 -2.39 -0.01 3.97 16 31 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 33 H 0.34 14.22 4.67 -89.70 -0.42 13.80 16 34 H 0.05 1.35 8.13 -2.39 -0.02 1.33 16 35 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.07 1.46 8.13 -2.39 -0.02 1.44 16 37 H 0.15 3.21 8.04 -2.91 -0.02 3.19 16 38 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 39 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 40 H 0.12 4.14 7.33 -2.91 -0.02 4.12 16 Total: -1.00 -64.33 341.63 5.21 -59.13 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.63 Total: 26.63 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 4.34 Total: -11.86 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -2.36 Total: -82.40 kcal Atomic # 8 Polarization: -32.65 SS G_CDS: -0.20 Total: -32.85 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.78 Total: -3.55 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -64.33 5.21 -59.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154786.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.194 kcal (2) G-P(sol) polarization free energy of solvation -64.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds