Wall clock time and date at job start Tue Mar 31 2020 08:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46913 * 2 1 4 4 H 1.08998 * 109.47244 * 304.24334 * 3 2 1 5 5 C 1.50700 * 109.46969 * 184.24716 * 3 2 1 6 6 H 1.08004 * 119.99942 * 239.99718 * 5 3 2 7 7 C 1.37874 * 120.00158 * 60.00037 * 5 3 2 8 8 N 1.31514 * 120.00130 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00024 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47278 * 89.99846 * 9 7 5 11 11 H 1.48497 * 109.47422 * 209.99857 * 9 7 5 12 12 H 1.48510 * 109.47176 * 329.99825 * 9 7 5 13 13 N 1.46898 * 109.47156 * 64.24650 * 3 2 1 14 14 C 1.46902 * 110.99763 * 205.87302 * 13 3 2 15 15 C 1.53004 * 109.47072 * 174.76815 * 14 13 3 16 16 O 1.42910 * 109.46762 * 64.99826 * 15 14 13 17 17 C 1.36003 * 116.99540 * 179.97438 * 16 15 14 18 18 C 1.38493 * 120.08632 * 0.25958 * 17 16 15 19 19 C 1.38307 * 120.02127 * 180.27559 * 18 17 16 20 20 C 1.38263 * 120.19242 * 359.73778 * 19 18 17 21 21 C 1.38203 * 120.16545 * 359.97438 * 20 19 18 22 22 C 1.38788 * 119.97672 * 0.02562 * 21 20 19 23 23 S 1.76197 * 120.09550 * 179.97438 * 22 21 20 24 24 C 1.81398 * 103.00219 * 0.02562 * 23 22 21 25 25 H 1.09003 * 109.46652 * 174.91781 * 1 2 3 26 26 H 1.08996 * 109.47047 * 294.91944 * 1 2 3 27 27 H 1.08996 * 109.47104 * 54.92014 * 1 2 3 28 28 H 1.08995 * 109.47194 * 239.99757 * 2 1 3 29 29 H 1.08997 * 109.47292 * 119.99976 * 2 1 3 30 30 H 0.96995 * 120.00076 * 180.02562 * 8 7 5 31 31 H 1.00892 * 111.00331 * 81.91932 * 13 3 2 32 32 H 1.08996 * 109.47637 * 54.76736 * 14 13 3 33 33 H 1.09003 * 109.47085 * 294.76787 * 14 13 3 34 34 H 1.08998 * 109.47345 * 305.00199 * 15 14 13 35 35 H 1.09001 * 109.47167 * 184.99348 * 15 14 13 36 36 H 1.07999 * 119.98874 * 0.02562 * 18 17 16 37 37 H 1.08003 * 119.90000 * 179.76738 * 19 18 17 38 38 H 1.08007 * 119.91743 * 179.97438 * 20 19 18 39 39 H 1.08005 * 120.01101 * 180.02562 * 21 20 19 40 40 H 1.08998 * 109.46874 * 300.00109 * 24 23 22 41 41 H 1.09006 * 109.47360 * 59.99493 * 24 23 22 42 42 H 1.08998 * 109.47306 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6159 1.9778 -0.8495 5 6 3.5433 1.4438 -0.1052 6 1 4.1390 1.8919 0.6764 7 6 4.1583 0.8731 -1.1993 8 7 3.4331 0.3272 -2.1509 9 14 6.0218 0.8742 -1.3294 10 1 6.5629 -0.3551 -0.6958 11 1 6.4182 0.9093 -2.7600 12 1 6.5658 2.0692 -0.6355 13 7 1.6358 2.1048 1.2474 14 6 1.5391 3.5590 1.0639 15 6 0.9921 4.1990 2.3414 16 8 1.9280 4.0136 3.4054 17 6 1.5925 4.5272 4.6192 18 6 0.3875 5.1897 4.7838 19 6 0.0502 5.7165 6.0173 20 6 0.9107 5.5793 7.0908 21 6 2.1125 4.9144 6.9369 22 6 2.4579 4.3832 5.7022 23 16 3.9896 3.5355 5.5023 24 6 4.7261 3.6278 7.1575 25 1 -0.3633 -1.0237 -0.0910 26 1 -0.3633 0.4330 0.9320 27 1 -0.3633 0.5906 -0.8410 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8658 -0.0746 -2.9204 31 1 2.2685 1.8765 1.9994 32 1 0.8684 3.7766 0.2327 33 1 2.5277 3.9647 0.8488 34 1 0.0442 3.7303 2.6056 35 1 0.8367 5.2652 2.1760 36 1 -0.2872 5.2986 3.9475 37 1 -0.8884 6.2360 6.1425 38 1 0.6430 5.9927 8.0520 39 1 2.7826 4.8084 7.7773 40 1 4.8590 4.6725 7.4383 41 1 4.0676 3.1394 7.8759 42 1 5.6939 3.1264 7.1530 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:55 Heat of formation + Delta-G solvation = -20.414423 kcal Electronic energy + Delta-G solvation = -21357.172674 eV Core-core repulsion = 18235.428297 eV Total energy + Delta-G solvation = -3121.744377 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.00017 -37.53799 -35.97362 -32.77307 -31.48847 -31.27220 -29.94983 -28.94517 -28.18733 -25.76687 -23.37910 -22.71013 -22.36468 -20.81826 -19.45415 -18.50155 -16.98805 -16.62304 -15.88325 -15.82224 -15.32382 -14.71910 -14.45092 -14.11005 -14.08411 -13.77346 -13.54621 -13.47078 -12.77338 -12.68498 -12.60312 -12.18354 -11.94164 -11.81883 -11.46512 -11.16207 -11.05228 -10.95392 -10.80681 -10.67949 -10.55372 -10.06756 -10.06106 -9.77326 -9.55268 -9.43395 -9.00611 -8.49198 -8.33454 -7.22675 -7.18759 -5.94925 -4.07025 1.10551 1.37056 1.55793 2.49339 3.31513 3.37069 3.38197 3.42560 3.61868 4.44850 4.70457 4.83115 4.93229 4.95496 5.06438 5.12820 5.17846 5.31466 5.37919 5.45656 5.52917 5.61680 5.68230 5.92683 6.05490 6.15809 6.27131 6.38441 6.44615 6.52562 6.55380 6.68479 6.74460 7.16383 7.20292 7.47930 7.51063 7.63456 7.83129 8.13732 8.20569 8.36752 8.71617 9.05943 9.60541 11.05327 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015797 B = 0.004114 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.088837 B = 6804.070352 C = 7968.422684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.214 3.786 4 H 0.031 0.969 5 C -0.542 4.542 6 H 0.055 0.945 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.688 5.688 14 C 0.068 3.932 15 C 0.062 3.938 16 O -0.296 6.296 17 C 0.160 3.840 18 C -0.195 4.195 19 C -0.086 4.086 20 C -0.148 4.148 21 C -0.100 4.100 22 C -0.126 4.126 23 S -0.075 6.075 24 C -0.158 4.158 25 H 0.024 0.976 26 H 0.045 0.955 27 H 0.036 0.964 28 H 0.090 0.910 29 H 0.031 0.969 30 H 0.260 0.740 31 H 0.336 0.664 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.068 0.932 35 H 0.056 0.944 36 H 0.133 0.867 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.598 10.015 17.109 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.049 0.951 5 C -0.582 4.582 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.526 5.526 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.318 5.318 14 C -0.062 4.062 15 C -0.013 4.013 16 O -0.209 6.209 17 C 0.108 3.892 18 C -0.216 4.216 19 C -0.107 4.107 20 C -0.168 4.168 21 C -0.124 4.124 22 C -0.239 4.239 23 S 0.167 5.833 24 C -0.327 4.327 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.108 0.892 29 H 0.049 0.951 30 H 0.070 0.930 31 H 0.153 0.847 32 H 0.099 0.901 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.151 0.849 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.479 9.124 15.793 18.782 hybrid contribution 1.207 0.949 0.896 1.777 sum -3.273 10.074 16.689 19.767 Atomic orbital electron populations 1.21686 0.99082 0.98249 1.00254 1.21493 0.91995 0.99256 1.01717 1.19156 0.92816 0.91198 0.86178 0.95136 1.21899 0.92721 1.37774 1.05765 0.92670 1.24920 0.97920 0.95021 0.95642 1.69878 1.34834 1.38230 1.09617 0.86666 0.86212 0.78497 0.77070 1.20633 1.21292 1.19990 1.60934 1.55725 1.05036 1.10113 1.21808 1.00125 0.91415 0.92843 1.23158 0.92399 0.99362 0.86368 1.86222 1.46012 1.72817 1.15818 1.18452 0.92281 0.93087 0.85354 1.21227 0.96958 1.03907 0.99477 1.20945 0.99184 0.98335 0.92212 1.20871 0.94718 1.02133 0.99072 1.20943 0.97800 0.98758 0.94903 1.21086 0.99983 1.07738 0.95052 1.86221 1.14487 1.69300 1.13316 1.23732 1.04664 1.05489 0.98776 0.95706 0.93547 0.94516 0.89175 0.95050 0.92969 0.84675 0.90078 0.94244 0.91424 0.92537 0.84911 0.85796 0.85944 0.85601 0.90166 0.90066 0.87507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.73 37.16 0.36 -2.46 16 2 C -0.11 -2.58 5.45 -26.73 -0.15 -2.73 16 3 C 0.21 5.34 1.98 -68.87 -0.14 5.21 16 4 H 0.03 0.83 7.70 -51.93 -0.40 0.43 16 5 C -0.54 -14.88 8.47 -34.44 -0.29 -15.17 16 6 H 0.06 1.54 7.73 -52.48 -0.41 1.13 16 7 C 0.07 1.86 5.29 -17.82 -0.09 1.77 16 8 N -0.89 -25.26 11.29 55.43 0.63 -24.63 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.69 -14.68 5.73 -107.95 -0.62 -15.30 16 14 C 0.07 1.26 5.92 -3.82 -0.02 1.24 16 15 C 0.06 0.94 5.09 37.16 0.19 1.13 16 16 O -0.30 -5.01 9.12 -19.75 -0.18 -5.19 16 17 C 0.16 2.40 6.69 -39.07 -0.26 2.14 16 18 C -0.20 -2.43 9.04 -39.46 -0.36 -2.79 16 19 C -0.09 -0.90 10.04 -39.55 -0.40 -1.30 16 20 C -0.15 -1.51 10.04 -39.58 -0.40 -1.90 16 21 C -0.10 -1.14 9.36 -39.39 -0.37 -1.50 16 22 C -0.13 -1.78 6.12 -38.96 -0.24 -2.01 16 23 S -0.08 -1.08 22.05 -107.50 -2.37 -3.45 16 24 C -0.16 -1.45 9.15 101.05 0.92 -0.52 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.92 7.87 -51.93 -0.41 0.51 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.09 2.44 5.97 -51.93 -0.31 2.13 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 31 H 0.34 7.54 8.09 -39.30 -0.32 7.22 16 32 H 0.08 1.43 7.92 -51.93 -0.41 1.02 16 33 H 0.04 0.80 8.11 -51.93 -0.42 0.38 16 34 H 0.07 0.97 7.65 -51.93 -0.40 0.58 16 35 H 0.06 0.72 7.67 -51.93 -0.40 0.32 16 36 H 0.13 1.45 6.30 -52.49 -0.33 1.12 16 37 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 39 H 0.13 1.13 5.88 -52.48 -0.31 0.83 16 40 H 0.08 0.63 7.75 -51.93 -0.40 0.23 16 41 H 0.08 0.65 7.75 -51.92 -0.40 0.25 16 42 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 354.81 15.07 5.35 5.35 Total: -1.00 -29.62 354.81 -10.04 -39.66 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.59 Total: 5.92 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: -1.23 Total: -18.89 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.01 Total: -39.93 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.18 Total: -5.19 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.08 SS G_CDS: -2.37 Total: -3.45 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.62 -10.04 -39.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.246 kcal (2) G-P(sol) polarization free energy of solvation -29.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds