Wall clock time and date at job start Tue Mar 31 2020 08:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46913 * 2 1 4 4 H 1.08998 * 109.47244 * 304.24334 * 3 2 1 5 5 C 1.50700 * 109.46969 * 184.24716 * 3 2 1 6 6 H 1.08004 * 119.99942 * 239.99718 * 5 3 2 7 7 C 1.37874 * 120.00158 * 60.00037 * 5 3 2 8 8 N 1.31514 * 120.00130 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00024 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47278 * 89.99846 * 9 7 5 11 11 H 1.48497 * 109.47422 * 209.99857 * 9 7 5 12 12 H 1.48510 * 109.47176 * 329.99825 * 9 7 5 13 13 N 1.46898 * 109.47156 * 64.24650 * 3 2 1 14 14 C 1.46902 * 110.99763 * 205.87302 * 13 3 2 15 15 C 1.53004 * 109.47072 * 174.76815 * 14 13 3 16 16 O 1.42910 * 109.46762 * 64.99826 * 15 14 13 17 17 C 1.36003 * 116.99540 * 179.97438 * 16 15 14 18 18 C 1.38493 * 120.08632 * 0.25958 * 17 16 15 19 19 C 1.38307 * 120.02127 * 180.27559 * 18 17 16 20 20 C 1.38263 * 120.19242 * 359.73778 * 19 18 17 21 21 C 1.38203 * 120.16545 * 359.97438 * 20 19 18 22 22 C 1.38788 * 119.97672 * 0.02562 * 21 20 19 23 23 S 1.76197 * 120.09550 * 179.97438 * 22 21 20 24 24 C 1.81398 * 103.00219 * 0.02562 * 23 22 21 25 25 H 1.09003 * 109.46652 * 174.91781 * 1 2 3 26 26 H 1.08996 * 109.47047 * 294.91944 * 1 2 3 27 27 H 1.08996 * 109.47104 * 54.92014 * 1 2 3 28 28 H 1.08995 * 109.47194 * 239.99757 * 2 1 3 29 29 H 1.08997 * 109.47292 * 119.99976 * 2 1 3 30 30 H 0.96995 * 120.00076 * 180.02562 * 8 7 5 31 31 H 1.00892 * 111.00331 * 81.91932 * 13 3 2 32 32 H 1.08996 * 109.47637 * 54.76736 * 14 13 3 33 33 H 1.09003 * 109.47085 * 294.76787 * 14 13 3 34 34 H 1.08998 * 109.47345 * 305.00199 * 15 14 13 35 35 H 1.09001 * 109.47167 * 184.99348 * 15 14 13 36 36 H 1.07999 * 119.98874 * 0.02562 * 18 17 16 37 37 H 1.08003 * 119.90000 * 179.76738 * 19 18 17 38 38 H 1.08007 * 119.91743 * 179.97438 * 20 19 18 39 39 H 1.08005 * 120.01101 * 180.02562 * 21 20 19 40 40 H 1.08998 * 109.46874 * 300.00109 * 24 23 22 41 41 H 1.09006 * 109.47360 * 59.99493 * 24 23 22 42 42 H 1.08998 * 109.47306 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6159 1.9778 -0.8495 5 6 3.5433 1.4438 -0.1052 6 1 4.1390 1.8919 0.6764 7 6 4.1583 0.8731 -1.1993 8 7 3.4331 0.3272 -2.1509 9 14 6.0218 0.8742 -1.3294 10 1 6.5629 -0.3551 -0.6958 11 1 6.4182 0.9093 -2.7600 12 1 6.5658 2.0692 -0.6355 13 7 1.6358 2.1048 1.2474 14 6 1.5391 3.5590 1.0639 15 6 0.9921 4.1990 2.3414 16 8 1.9280 4.0136 3.4054 17 6 1.5925 4.5272 4.6192 18 6 0.3875 5.1897 4.7838 19 6 0.0502 5.7165 6.0173 20 6 0.9107 5.5793 7.0908 21 6 2.1125 4.9144 6.9369 22 6 2.4579 4.3832 5.7022 23 16 3.9896 3.5355 5.5023 24 6 4.7261 3.6278 7.1575 25 1 -0.3633 -1.0237 -0.0910 26 1 -0.3633 0.4330 0.9320 27 1 -0.3633 0.5906 -0.8410 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8658 -0.0746 -2.9204 31 1 2.2685 1.8765 1.9994 32 1 0.8684 3.7766 0.2327 33 1 2.5277 3.9647 0.8488 34 1 0.0442 3.7303 2.6056 35 1 0.8367 5.2652 2.1760 36 1 -0.2872 5.2986 3.9475 37 1 -0.8884 6.2360 6.1425 38 1 0.6430 5.9927 8.0520 39 1 2.7826 4.8084 7.7773 40 1 4.8590 4.6725 7.4383 41 1 4.0676 3.1394 7.8759 42 1 5.6939 3.1264 7.1530 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159114.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:54 Heat of formation + Delta-G solvation = -37.356712 kcal Electronic energy + Delta-G solvation = -21357.907347 eV Core-core repulsion = 18235.428297 eV Total energy + Delta-G solvation = -3122.479050 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 295.135 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.01892 -38.67538 -37.70152 -34.60968 -33.18968 -32.31020 -31.05964 -29.81009 -29.56744 -27.64042 -24.85869 -24.03067 -23.51706 -22.07487 -21.39478 -19.53331 -18.70343 -17.97031 -17.14911 -16.90852 -16.68844 -16.21896 -15.72139 -15.48777 -15.20778 -14.93971 -14.79532 -14.64458 -14.39927 -13.99671 -13.55378 -13.48268 -13.35278 -13.13410 -12.99933 -12.82240 -12.77104 -12.54014 -12.44876 -12.11154 -11.92439 -11.78768 -11.51395 -11.31128 -11.03009 -10.96802 -10.68414 -10.46775 -9.43692 -9.08214 -8.23844 -8.06305 -6.27501 0.22753 0.46030 0.63925 1.36228 1.37775 1.47422 1.62000 2.29729 2.39805 2.73869 3.13127 3.61020 3.85029 3.96042 4.20548 4.27245 4.27422 4.27704 4.31606 4.39347 4.45840 4.55666 4.61020 4.76820 4.80169 4.81543 4.87144 4.94682 5.01616 5.17790 5.20747 5.36257 5.42668 5.51920 5.53384 5.63338 5.76414 5.83735 6.10344 6.19717 6.36686 6.46649 6.77971 6.98773 7.43367 8.90282 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.015797 B = 0.004114 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.088837 B = 6804.070352 C = 7968.422684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.102 4.102 3 C 0.221 3.779 4 H 0.006 0.994 5 C -0.559 4.559 6 H 0.042 0.958 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.947 3.053 10 H -0.275 1.275 11 H -0.279 1.279 12 H -0.277 1.277 13 N -0.676 5.676 14 C 0.069 3.931 15 C 0.074 3.926 16 O -0.325 6.325 17 C 0.125 3.875 18 C -0.201 4.201 19 C -0.084 4.084 20 C -0.142 4.142 21 C -0.102 4.102 22 C -0.138 4.138 23 S -0.166 6.166 24 C -0.135 4.135 25 H 0.043 0.957 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.062 0.938 29 H 0.023 0.977 30 H 0.263 0.737 31 H 0.329 0.671 32 H 0.089 0.911 33 H 0.013 0.987 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.145 0.855 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.149 0.851 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.547 11.240 19.454 23.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 C 0.112 3.888 4 H 0.024 0.976 5 C -0.598 4.598 6 H 0.060 0.940 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.773 3.227 10 H -0.201 1.201 11 H -0.204 1.204 12 H -0.202 1.202 13 N -0.305 5.305 14 C -0.061 4.061 15 C -0.001 4.001 16 O -0.239 6.239 17 C 0.074 3.926 18 C -0.222 4.222 19 C -0.104 4.104 20 C -0.161 4.161 21 C -0.126 4.126 22 C -0.251 4.251 23 S 0.075 5.925 24 C -0.303 4.303 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.107 0.893 33 H 0.031 0.969 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.162 0.838 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.167 0.833 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.447 10.363 18.153 21.601 hybrid contribution 1.478 0.635 0.279 1.632 sum -3.969 10.998 18.432 21.828 Atomic orbital electron populations 1.21536 0.96133 0.99617 1.00686 1.21354 0.94607 0.98278 0.99856 1.18961 0.91418 0.91678 0.86756 0.97649 1.22138 0.94208 1.37841 1.05630 0.93999 1.25597 1.01953 0.94740 0.95390 1.69987 1.36304 1.38556 1.09921 0.85741 0.81375 0.78357 0.77262 1.20099 1.20441 1.20174 1.60890 1.54680 1.06782 1.08182 1.21860 0.99168 0.89630 0.95480 1.22978 0.92004 1.00479 0.84674 1.86169 1.46829 1.73974 1.16933 1.18815 0.93947 0.94972 0.84857 1.21472 0.96155 1.03573 1.00976 1.21384 1.00363 0.97370 0.91310 1.21342 0.93684 1.00633 1.00464 1.21314 0.98765 0.98049 0.94423 1.21216 0.99263 1.08554 0.96077 1.86415 1.16749 1.70449 1.18856 1.23752 1.04737 1.06926 0.94904 0.93748 0.92537 0.94659 0.91959 0.95843 0.92813 0.85476 0.89312 0.96858 0.90464 0.89949 0.83761 0.82561 0.82476 0.83340 0.88535 0.88600 0.86388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.73 71.98 0.70 -4.32 16 2 C -0.10 -5.08 5.45 30.60 0.17 -4.91 16 3 C 0.22 11.37 1.98 44.17 0.09 11.46 16 4 H 0.01 0.31 7.70 -2.39 -0.02 0.29 16 5 C -0.56 -31.76 8.47 25.60 0.22 -31.54 16 6 H 0.04 2.44 7.73 -2.91 -0.02 2.41 16 7 C 0.02 1.32 5.29 84.65 0.45 1.77 16 8 N -0.91 -52.81 11.29 21.45 0.24 -52.57 16 9 Si 0.95 45.10 29.54 68.60 2.03 47.12 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 N -0.68 -29.73 5.73 -495.45 -2.84 -32.57 16 14 C 0.07 2.61 5.92 86.30 0.51 3.12 16 15 C 0.07 2.22 5.09 71.98 0.37 2.59 16 16 O -0.33 -11.31 9.12 -93.58 -0.85 -12.17 16 17 C 0.12 3.73 6.69 22.60 0.15 3.88 16 18 C -0.20 -4.65 9.04 22.35 0.20 -4.45 16 19 C -0.08 -1.47 10.04 22.29 0.22 -1.25 16 20 C -0.14 -2.35 10.04 22.27 0.22 -2.13 16 21 C -0.10 -2.08 9.36 22.39 0.21 -1.87 16 22 C -0.14 -3.86 6.12 22.68 0.14 -3.72 16 23 S -0.17 -4.87 22.05 -56.49 -1.25 -6.12 16 24 C -0.14 -2.27 9.15 113.37 1.04 -1.23 16 25 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.06 2.19 7.87 -2.39 -0.02 2.17 16 27 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.06 3.45 5.97 -2.39 -0.01 3.44 16 29 H 0.02 1.15 8.14 -2.39 -0.02 1.14 16 30 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.33 15.41 8.09 -89.70 -0.73 14.69 16 32 H 0.09 3.19 7.92 -2.39 -0.02 3.17 16 33 H 0.01 0.57 8.11 -2.39 -0.02 0.55 16 34 H 0.08 2.16 7.65 -2.39 -0.02 2.14 16 35 H 0.08 2.02 7.67 -2.39 -0.02 2.01 16 36 H 0.14 2.85 6.30 -2.91 -0.02 2.83 16 37 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 38 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 39 H 0.15 2.21 5.88 -2.91 -0.02 2.20 16 40 H 0.10 1.30 7.75 -2.39 -0.02 1.28 16 41 H 0.10 1.33 7.75 -2.39 -0.02 1.31 16 42 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -66.72 354.81 2.29 -64.43 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: 0.28 Total: 24.49 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 4.68 Total: -32.62 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -2.60 Total: -85.14 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: -0.85 Total: -12.17 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: -4.87 SS G_CDS: -1.25 Total: -6.12 kcal Total: -66.72 2.29 -64.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159114.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.077 kcal (2) G-P(sol) polarization free energy of solvation -66.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds