Wall clock time and date at job start Tue Mar 31 2020 06:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39760 * 125.83480 * 2 1 4 4 C 1.36106 * 107.82284 * 180.13981 * 3 2 1 5 5 N 1.39483 * 126.21299 * 179.90587 * 4 3 2 6 6 C 1.34773 * 119.99914 * 359.68503 * 5 4 3 7 7 O 1.21292 * 120.00067 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99661 * 179.97438 * 6 5 4 9 9 H 1.08999 * 109.47252 * 60.00623 * 8 6 5 10 10 C 1.52995 * 109.47460 * 299.99985 * 8 6 5 11 11 N 1.46504 * 109.46700 * 180.02562 * 8 6 5 12 12 C 1.34777 * 119.99854 * 204.99839 * 11 8 6 13 13 N 1.34773 * 120.00097 * 180.27545 * 12 11 8 14 14 O 1.21593 * 119.99953 * 0.02562 * 12 11 8 15 15 N 1.35258 * 107.57295 * 359.64275 * 4 3 2 16 16 C 1.46496 * 126.05254 * 180.22875 * 15 4 3 17 17 C 1.50698 * 109.47468 * 89.99356 * 16 15 4 18 18 H 1.07999 * 120.00088 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00142 * 180.02562 * 17 16 15 20 20 N 1.31521 * 119.99844 * 180.02562 * 19 17 16 21 21 Si 1.86798 * 120.00182 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.47130 * 90.00196 * 21 19 17 23 23 H 1.48499 * 109.47153 * 210.00437 * 21 19 17 24 24 H 1.48497 * 109.46993 * 330.00119 * 21 19 17 25 25 N 1.30844 * 125.83860 * 179.73546 * 2 1 3 26 26 H 1.09001 * 109.46921 * 270.23433 * 1 2 3 27 27 H 1.09001 * 109.47011 * 30.23895 * 1 2 3 28 28 H 1.09003 * 109.47114 * 150.23982 * 1 2 3 29 29 H 1.07994 * 126.08708 * 0.02979 * 3 2 1 30 30 H 0.97003 * 119.99432 * 179.68758 * 5 4 3 31 31 H 1.09001 * 109.47135 * 179.97438 * 10 8 6 32 32 H 1.08999 * 109.47409 * 300.00542 * 10 8 6 33 33 H 1.09007 * 109.46569 * 60.00114 * 10 8 6 34 34 H 0.97000 * 120.00410 * 25.00565 * 11 8 6 35 35 H 0.96998 * 120.00525 * 179.72346 * 13 12 11 36 36 H 0.97000 * 120.00112 * 359.73180 * 13 12 11 37 37 H 1.09001 * 109.47293 * 209.99851 * 16 15 4 38 38 H 1.08999 * 109.47009 * 330.00084 * 16 15 4 39 39 H 0.97005 * 119.99934 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7122 -0.0032 5 7 4.7513 1.5276 -0.0061 6 6 4.6156 2.8685 -0.0123 7 8 3.5095 3.3661 -0.0150 8 6 5.8383 3.7494 -0.0149 9 1 6.4345 3.5410 -0.9033 10 6 6.6723 3.4681 1.2365 11 7 5.4270 5.1555 -0.0212 12 6 6.2535 6.0972 -0.5176 13 7 5.8775 7.3914 -0.5183 14 8 7.3404 5.7797 -0.9607 15 7 3.6093 -0.6403 0.0030 16 6 4.7870 -1.5115 0.0070 17 6 5.1909 -1.8037 1.4292 18 1 4.6265 -1.3830 2.2481 19 6 6.2810 -2.6083 1.6848 20 7 6.6332 -2.8637 2.9260 21 14 7.2578 -3.3355 0.2683 22 1 8.3487 -2.4023 -0.1113 23 1 7.8414 -4.6357 0.6856 24 1 6.3597 -3.5468 -0.8953 25 7 2.2731 -1.0607 0.0049 26 1 -0.3633 0.0042 1.0277 27 1 -0.3633 0.8878 -0.5175 28 1 -0.3633 -0.8922 -0.5101 29 1 1.9901 2.1597 0.0005 30 1 5.6358 1.1295 -0.0036 31 1 7.5569 4.1050 1.2344 32 1 6.0761 3.6766 2.1249 33 1 6.9782 2.4219 1.2416 34 1 4.5598 5.4088 0.3321 35 1 6.4740 8.0697 -0.8719 36 1 5.0103 7.6447 -0.1651 37 1 4.5499 -2.4455 -0.5026 38 1 5.6084 -1.0144 -0.5090 39 1 7.3999 -3.4300 3.1059 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325790224.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:17 Heat of formation + Delta-G solvation = -15.846995 kcal Electronic energy + Delta-G solvation = -23765.700251 eV Core-core repulsion = 20130.153470 eV Total energy + Delta-G solvation = -3635.546782 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.55942 -41.36702 -40.27707 -36.38771 -36.14953 -35.60710 -34.70943 -33.99462 -31.61461 -30.97534 -29.68316 -28.01097 -25.95979 -24.39182 -23.13192 -21.84384 -21.33755 -20.87174 -19.56691 -19.25581 -18.74347 -18.08024 -17.50427 -16.92671 -16.64517 -16.43262 -15.92586 -15.77411 -15.69424 -15.39730 -14.92095 -14.73655 -14.39871 -14.16812 -13.94006 -13.74904 -13.51537 -13.36747 -13.15250 -12.90783 -12.73523 -12.54430 -12.14479 -11.87349 -11.79031 -11.53711 -11.47798 -11.01115 -10.90558 -10.72488 -10.18294 -9.63676 -9.11125 -8.41767 -6.54118 0.67756 1.10183 1.34255 1.38069 1.47227 1.53590 1.81326 2.00501 2.10448 2.25202 2.25423 2.89982 3.20474 3.59747 3.77952 3.93088 4.02762 4.17348 4.44955 4.55055 4.59606 4.65619 4.73081 4.81029 4.89826 4.93642 5.12376 5.14586 5.18979 5.20741 5.28470 5.81695 5.86484 5.96744 6.03499 6.11989 6.28892 6.49949 6.78105 6.96274 7.01060 7.10906 7.60602 8.74330 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.012299 B = 0.004905 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.032876 B = 5707.162642 C = 7510.163025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.060 3.940 3 C -0.301 4.301 4 C 0.300 3.700 5 N -0.632 5.632 6 C 0.524 3.476 7 O -0.525 6.525 8 C 0.162 3.838 9 H 0.125 0.875 10 C -0.160 4.160 11 N -0.721 5.721 12 C 0.707 3.293 13 N -0.844 5.844 14 O -0.637 6.637 15 N -0.365 5.365 16 C 0.237 3.763 17 C -0.552 4.552 18 H 0.025 0.975 19 C 0.028 3.972 20 N -0.933 5.933 21 Si 0.945 3.055 22 H -0.246 1.246 23 H -0.280 1.280 24 H -0.247 1.247 25 N -0.328 5.328 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.173 0.827 30 H 0.423 0.577 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.415 0.585 35 H 0.423 0.577 36 H 0.414 0.586 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.143 17.888 -7.822 19.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.105 4.105 3 C -0.333 4.333 4 C 0.078 3.922 5 N -0.280 5.280 6 C 0.311 3.689 7 O -0.400 6.400 8 C 0.052 3.948 9 H 0.142 0.858 10 C -0.219 4.219 11 N -0.380 5.380 12 C 0.405 3.595 13 N -0.413 5.413 14 O -0.518 6.518 15 N -0.150 5.150 16 C 0.117 3.883 17 C -0.590 4.590 18 H 0.043 0.957 19 C -0.173 4.173 20 N -0.570 5.570 21 Si 0.766 3.234 22 H -0.169 1.169 23 H -0.206 1.206 24 H -0.171 1.171 25 N -0.152 5.152 26 H 0.101 0.899 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.190 0.810 30 H 0.262 0.738 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.252 0.748 35 H 0.257 0.743 36 H 0.245 0.755 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.751 16.441 -8.032 18.504 hybrid contribution 0.524 0.300 0.361 0.703 sum -2.227 16.740 -7.671 18.548 Atomic orbital electron populations 1.20242 0.83880 1.04226 1.03672 1.22903 0.98770 0.90084 0.98744 1.21510 0.88878 1.00984 1.21933 1.18270 0.89431 0.82730 1.01756 1.42771 1.07842 1.05697 1.71727 1.21001 0.91784 0.81148 0.74956 1.90604 1.27389 1.73684 1.48319 1.20396 0.91252 0.80244 1.02953 0.85786 1.22182 1.00335 1.03667 0.95672 1.44655 1.21697 1.04715 1.66910 1.16000 0.83239 0.82206 0.78064 1.42732 1.24206 1.05355 1.69018 1.90959 1.23756 1.81874 1.55247 1.48824 1.06135 1.02703 1.57382 1.19763 0.80554 0.90763 0.97218 1.21197 1.13969 1.32947 0.90912 0.95669 1.25768 0.97567 0.95165 0.98791 1.70028 1.27815 1.37804 1.21401 0.85765 0.79619 0.78956 0.79070 1.16936 1.20582 1.17104 1.77325 0.86225 1.23582 1.28114 0.89883 0.88319 0.90584 0.80984 0.73837 0.90119 0.91457 0.90250 0.74760 0.74288 0.75503 0.93069 0.91558 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.62 10.44 71.24 0.74 -0.88 16 2 C 0.06 2.29 7.21 43.07 0.31 2.60 16 3 C -0.30 -11.46 9.58 22.14 0.21 -11.25 16 4 C 0.30 11.92 7.66 131.31 1.01 12.93 16 5 N -0.63 -20.12 5.31 -308.56 -1.64 -21.76 16 6 C 0.52 14.53 7.19 87.66 0.63 15.16 16 7 O -0.53 -16.15 12.97 -3.07 -0.04 -16.19 16 8 C 0.16 3.60 2.99 44.24 0.13 3.73 16 9 H 0.12 2.75 7.58 -2.39 -0.02 2.73 16 10 C -0.16 -3.43 9.38 71.98 0.68 -2.76 16 11 N -0.72 -13.94 4.96 -461.41 -2.29 -16.22 16 12 C 0.71 14.62 8.80 179.06 1.58 16.20 16 13 N -0.84 -9.37 8.88 -184.75 -1.64 -11.01 16 14 O -0.64 -18.70 16.84 -4.01 -0.07 -18.76 16 15 N -0.37 -16.44 3.60 -348.72 -1.26 -17.70 16 16 C 0.24 10.83 5.07 85.63 0.43 11.27 16 17 C -0.55 -30.40 9.94 25.60 0.25 -30.14 16 18 H 0.02 1.63 8.06 -2.91 -0.02 1.60 16 19 C 0.03 1.49 5.47 84.65 0.46 1.96 16 20 N -0.93 -54.90 13.96 21.45 0.30 -54.60 16 21 Si 0.94 39.14 27.47 68.60 1.88 41.03 16 22 H -0.25 -9.21 7.11 99.48 0.71 -8.51 16 23 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.25 -9.58 6.54 99.48 0.65 -8.93 16 25 N -0.33 -14.82 12.56 -47.45 -0.60 -15.42 16 26 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 29 H 0.17 6.13 5.83 -2.91 -0.02 6.12 16 30 H 0.42 12.23 7.38 -92.71 -0.68 11.54 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 1.72 7.57 -2.38 -0.02 1.70 16 34 H 0.41 6.85 7.80 -92.71 -0.72 6.13 16 35 H 0.42 3.69 8.93 -92.71 -0.83 2.87 16 36 H 0.41 2.14 8.84 -92.71 -0.82 1.32 16 37 H 0.05 2.37 7.20 -2.39 -0.02 2.35 16 38 H 0.07 2.60 6.93 -2.39 -0.02 2.58 16 39 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 Total: -1.00 -77.32 336.17 -0.87 -78.20 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -1.97 Total: 33.62 kcal Atomic # 6 Polarization: 12.38 SS G_CDS: 6.44 Total: 18.82 kcal Atomic # 7 Polarization: -129.59 SS G_CDS: -7.12 Total: -136.71 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -0.11 Total: -34.95 kcal Atomic # 14 Polarization: 39.14 SS G_CDS: 1.88 Total: 41.03 kcal Total: -77.32 -0.87 -78.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325790224.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.350 kcal (2) G-P(sol) polarization free energy of solvation -77.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds