Wall clock time and date at job start Tue Mar 31 2020 06:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31955 * 120.39934 * 2 1 4 4 N 1.28710 * 120.56370 * 180.29437 * 3 2 1 5 5 C 1.32700 * 121.42172 * 359.95687 * 4 3 2 6 6 N 1.38419 * 119.61513 * 180.02562 * 5 4 3 7 7 N 1.40096 * 119.99867 * 0.02562 * 6 5 4 8 8 C 1.34786 * 119.99620 * 179.97438 * 7 6 5 9 9 O 1.21274 * 119.99729 * 0.02562 * 8 7 6 10 10 C 1.50699 * 119.99844 * 180.02562 * 8 7 6 11 11 C 1.53001 * 109.47041 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47015 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47014 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.47041 * 180.02562 * 13 12 11 15 15 H 1.08003 * 120.00223 * 0.02562 * 14 13 12 16 16 C 1.37877 * 120.00039 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99987 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00378 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46621 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47354 * 119.99741 * 18 16 14 21 21 H 1.48501 * 109.47114 * 240.00366 * 18 16 14 22 22 N 1.32685 * 120.76344 * 0.04492 * 5 4 3 23 23 C 1.32871 * 119.36611 * 359.97438 * 22 5 4 24 24 O 1.35520 * 120.66023 * 180.02562 * 23 22 5 25 25 H 1.09000 * 109.47437 * 269.72238 * 1 2 3 26 26 H 1.09009 * 109.46621 * 29.72243 * 1 2 3 27 27 H 1.09004 * 109.47585 * 149.71797 * 1 2 3 28 28 H 0.97003 * 119.99757 * 180.02562 * 6 5 4 29 29 H 0.96993 * 120.00352 * 0.02562 * 7 6 5 30 30 H 1.09005 * 109.46738 * 300.00378 * 10 8 7 31 31 H 1.08999 * 109.46902 * 60.00125 * 10 8 7 32 32 H 1.08997 * 109.47037 * 300.00182 * 11 10 8 33 33 H 1.09000 * 109.47066 * 59.99785 * 11 10 8 34 34 H 1.08997 * 109.47630 * 300.00141 * 12 11 10 35 35 H 1.09000 * 109.47116 * 60.00138 * 12 11 10 36 36 H 1.08997 * 109.47361 * 300.00703 * 13 12 11 37 37 H 1.09000 * 109.46742 * 60.00306 * 13 12 11 38 38 H 0.97001 * 120.00316 * 180.02562 * 17 16 14 39 39 H 0.96701 * 114.00233 * 269.97135 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1747 1.1381 0.0000 4 7 3.4618 1.1418 -0.0057 5 6 4.1568 0.0114 -0.0109 6 7 5.5402 0.0590 -0.0164 7 7 6.1985 1.2957 -0.0159 8 6 7.5456 1.3420 -0.0207 9 8 8.1876 0.3132 -0.0260 10 6 8.2538 2.6722 -0.0197 11 6 9.7667 2.4445 -0.0265 12 6 10.4857 3.7950 -0.0261 13 6 11.9986 3.5673 -0.0323 14 6 12.7068 4.8975 -0.0312 15 1 12.1350 5.8138 -0.0262 16 6 14.0848 4.9449 -0.0367 17 7 14.7811 3.8293 -0.0434 18 14 14.9627 6.5938 -0.0361 19 1 13.9594 7.6886 -0.0299 20 1 15.8181 6.6987 1.1732 21 1 15.8083 6.7048 -1.2518 22 7 3.5411 -1.1639 -0.0112 23 6 2.2130 -1.2037 -0.0058 24 8 1.5571 -2.3896 -0.0055 25 1 -0.3634 -0.0050 1.0276 26 1 -0.3633 0.8926 -0.5096 27 1 -0.3634 -0.8874 -0.5182 28 1 6.0538 -0.7639 -0.0205 29 1 5.6850 2.1185 -0.0114 30 1 7.9676 3.2369 -0.9071 31 1 7.9742 3.2319 0.8729 32 1 10.0531 1.8797 0.8606 33 1 10.0459 1.8850 -0.9193 34 1 10.1992 4.3595 -0.9134 35 1 10.2066 4.3549 0.8665 36 1 12.2848 3.0030 0.8552 37 1 12.2780 3.0072 -0.9247 38 1 15.7505 3.8626 -0.0468 39 1 1.3627 -2.7318 -0.8887 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326655180.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:29 Heat of formation + Delta-G solvation = -8.073918 kcal Electronic energy + Delta-G solvation = -21963.058565 eV Core-core repulsion = 18327.848849 eV Total energy + Delta-G solvation = -3635.209716 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.03378 -41.09988 -39.21305 -37.87855 -36.60508 -35.73527 -34.63373 -34.03828 -32.54875 -31.07748 -28.73648 -27.43279 -26.16869 -24.59002 -24.09786 -22.24627 -21.61319 -20.78296 -20.25287 -19.02812 -18.46965 -18.24024 -17.59113 -17.07005 -16.87167 -16.48265 -16.20515 -15.93094 -15.56875 -15.29289 -14.54030 -14.48887 -13.85611 -13.75809 -13.60887 -13.34648 -13.31098 -13.25281 -13.14108 -12.84311 -12.43426 -12.35749 -12.31006 -12.15233 -12.14070 -11.44034 -11.34842 -11.23432 -10.98469 -10.96419 -10.54081 -10.48683 -9.14549 -8.17649 -6.29183 -0.69441 -0.32515 0.30546 1.40371 1.41546 1.42038 1.55566 1.95552 2.22230 2.29010 2.42937 2.86025 3.15421 3.26342 3.58531 3.67787 3.91110 4.04620 4.16348 4.44342 4.62832 4.69853 4.79481 4.84489 4.88177 4.89979 5.18693 5.20597 5.27223 5.35478 5.40956 5.45953 5.59790 5.81411 5.90833 5.99847 6.27097 6.29095 6.34937 6.90004 7.02003 7.36864 7.40419 8.94631 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.053765 B = 0.001908 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.662646 B =14674.462042 C =15156.213581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.040 4.040 3 N -0.155 5.155 4 N -0.356 5.356 5 C 0.517 3.483 6 N -0.486 5.486 7 N -0.502 5.502 8 C 0.519 3.481 9 O -0.576 6.576 10 C -0.114 4.114 11 C -0.096 4.096 12 C -0.097 4.097 13 C 0.017 3.983 14 C -0.539 4.539 15 H 0.067 0.933 16 C -0.008 4.008 17 N -0.938 5.938 18 Si 0.968 3.032 19 H -0.257 1.257 20 H -0.280 1.280 21 H -0.280 1.280 22 N -0.558 5.558 23 C 0.403 3.597 24 O -0.459 6.459 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.108 0.892 28 H 0.446 0.554 29 H 0.445 0.555 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.063 0.937 36 H -0.015 1.015 37 H -0.014 1.014 38 H 0.262 0.738 39 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.413 -8.456 -1.815 35.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.197 4.197 3 N -0.005 5.005 4 N -0.215 5.215 5 C 0.157 3.843 6 N -0.218 5.218 7 N -0.253 5.253 8 C 0.308 3.692 9 O -0.453 6.453 10 C -0.155 4.155 11 C -0.135 4.135 12 C -0.134 4.134 13 C -0.021 4.021 14 C -0.577 4.577 15 H 0.085 0.915 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.793 3.207 19 H -0.181 1.181 20 H -0.206 1.206 21 H -0.206 1.206 22 N -0.298 5.298 23 C 0.202 3.798 24 O -0.270 6.270 25 H 0.110 0.890 26 H 0.108 0.892 27 H 0.126 0.874 28 H 0.292 0.708 29 H 0.290 0.710 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.004 0.996 37 H 0.004 0.996 38 H 0.071 0.929 39 H 0.306 0.694 Dipole moment (debyes) X Y Z Total from point charges -33.115 -8.208 -1.257 34.140 hybrid contribution 0.793 -0.783 -0.367 1.173 sum -32.322 -8.991 -1.624 33.589 Atomic orbital electron populations 1.20653 0.82912 1.05697 1.04889 1.24112 1.02347 0.89344 1.03917 1.73306 0.99060 1.24927 1.03211 1.73440 1.01800 1.23101 1.23154 1.20243 0.86482 0.86531 0.90997 1.42553 0.98988 1.01856 1.78453 1.45082 1.04639 0.99063 1.76507 1.21742 0.79412 0.93405 0.74688 1.90744 1.66019 1.37256 1.51267 1.21670 0.94011 0.91760 1.08018 1.21279 0.93070 0.97588 1.01552 1.21450 0.94549 0.95753 1.01665 1.19077 0.93095 0.95459 0.94423 1.21806 0.92057 0.93992 1.49880 0.91497 1.26082 0.98939 1.00544 0.94929 1.70135 1.06678 1.28949 1.52081 0.85350 0.78438 0.79357 0.77589 1.18068 1.20597 1.20587 1.67692 1.12275 1.28390 1.21427 1.19913 0.85212 0.87917 0.86772 1.84706 1.72856 1.32722 1.36708 0.89006 0.89236 0.87369 0.70799 0.71003 0.85096 0.85184 0.93446 0.93378 0.91755 0.91817 0.99631 0.99590 0.92932 0.69399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.01 71.24 0.71 0.34 16 2 C -0.04 -0.54 6.89 42.86 0.30 -0.24 16 3 N -0.16 -2.98 11.54 -47.05 -0.54 -3.52 16 4 N -0.36 -7.69 10.54 -59.54 -0.63 -8.32 16 5 C 0.52 11.26 8.61 261.30 2.25 13.51 16 6 N -0.49 -10.82 6.42 -59.52 -0.38 -11.21 16 7 N -0.50 -10.32 6.28 -173.53 -1.09 -11.41 16 8 C 0.52 13.12 7.95 87.66 0.70 13.81 16 9 O -0.58 -19.81 15.82 -3.01 -0.05 -19.85 16 10 C -0.11 -2.49 5.70 29.85 0.17 -2.32 16 11 C -0.10 -3.24 4.50 30.59 0.14 -3.10 16 12 C -0.10 -3.76 5.15 30.59 0.16 -3.61 16 13 C 0.02 0.89 4.97 29.85 0.15 1.04 16 14 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 15 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 16 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 17 N -0.94 -58.79 13.29 21.45 0.28 -58.50 16 18 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 19 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 N -0.56 -11.10 10.59 -310.29 -3.29 -14.39 16 23 C 0.40 5.62 7.81 84.85 0.66 6.29 16 24 O -0.46 -3.21 12.73 -88.23 -1.12 -4.33 16 25 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 27 H 0.11 -0.11 7.61 -2.38 -0.02 -0.13 16 28 H 0.45 10.39 8.12 -213.32 -1.73 8.65 16 29 H 0.44 7.16 7.93 -213.33 -1.69 5.47 16 30 H 0.13 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.13 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 33 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 34 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 36 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 37 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 38 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 39 H 0.44 -1.88 9.06 -74.06 -0.67 -2.55 16 Total: -1.00 -81.40 344.36 -1.84 -83.24 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -2.98 Total: 6.54 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: 5.93 Total: -5.00 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -5.64 Total: -107.34 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -1.17 Total: -24.18 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -81.40 -1.84 -83.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326655180.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.168 kcal (2) G-P(sol) polarization free energy of solvation -81.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds