Wall clock time and date at job start Tue Mar 31 2020 08:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47000 * 2 1 4 4 H 1.09005 * 109.46965 * 305.00098 * 3 2 1 5 5 F 1.39906 * 109.47198 * 64.99876 * 3 2 1 6 6 C 1.50701 * 109.47330 * 184.99830 * 3 2 1 7 7 O 1.21283 * 119.99729 * 315.00398 * 6 3 2 8 8 N 1.34775 * 119.99767 * 134.99958 * 6 3 2 9 9 C 1.39928 * 119.99943 * 184.62565 * 8 6 3 10 10 C 1.38930 * 120.04475 * 144.92583 * 9 8 6 11 11 C 1.38118 * 120.03957 * 179.97438 * 10 9 8 12 12 C 1.38215 * 120.12460 * 359.76867 * 11 10 9 13 13 C 1.38769 * 120.08313 * 0.50820 * 12 11 10 14 14 O 1.35901 * 120.02017 * 179.73936 * 13 12 11 15 15 C 1.42898 * 116.99839 * 359.72964 * 14 13 12 16 16 C 1.53000 * 109.47100 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47426 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99641 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00271 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99865 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99986 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47460 * 89.99920 * 21 19 17 23 23 H 1.48500 * 109.46804 * 210.00044 * 21 19 17 24 24 H 1.48504 * 109.47166 * 329.99667 * 21 19 17 25 25 C 1.38627 * 119.95856 * 359.46855 * 13 12 11 26 26 H 1.08996 * 109.46857 * 299.99970 * 1 2 3 27 27 H 1.08996 * 109.47126 * 60.00171 * 1 2 3 28 28 H 1.09001 * 109.46865 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47519 * 240.00335 * 2 1 3 30 30 H 1.08996 * 109.47126 * 119.99829 * 2 1 3 31 31 H 0.97001 * 120.00459 * 4.61990 * 8 6 3 32 32 H 1.08000 * 119.97590 * 359.97438 * 10 9 8 33 33 H 1.07995 * 119.93679 * 180.02562 * 11 10 9 34 34 H 1.07997 * 119.96253 * 180.27411 * 12 11 10 35 35 H 1.08998 * 109.47190 * 299.99705 * 15 14 13 36 36 H 1.08999 * 109.47615 * 59.99785 * 15 14 13 37 37 H 1.09008 * 109.47021 * 300.00003 * 16 15 14 38 38 H 1.08999 * 109.47352 * 59.99825 * 16 15 14 39 39 H 0.96999 * 120.00373 * 179.97438 * 20 19 17 40 40 H 1.08001 * 120.05753 * 180.24767 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 9 1.6698 2.0681 1.1954 6 6 3.5419 1.4444 -0.1238 7 8 4.2064 0.6812 0.5447 8 7 4.1466 2.2942 -0.9774 9 6 5.5319 2.2304 -1.1643 10 6 6.0776 2.4886 -2.4155 11 6 7.4450 2.4261 -2.5997 12 6 8.2741 2.1114 -1.5396 13 6 7.7341 1.8468 -0.2890 14 8 8.5501 1.5323 0.7513 15 6 9.9532 1.4864 0.4842 16 6 10.7045 1.1195 1.7656 17 6 12.1842 1.0717 1.4842 18 1 12.5520 1.2824 0.4908 19 6 13.0685 0.7601 2.4951 20 7 12.6207 0.5051 3.7051 21 14 14.9027 0.7015 2.1464 22 1 15.4942 2.0434 2.3802 23 1 15.5466 -0.2872 3.0481 24 1 15.1255 0.3017 0.7337 25 6 6.3622 1.9091 -0.1000 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.6216 2.9501 -1.4623 32 1 5.4321 2.7385 -3.2446 33 1 7.8675 2.6276 -3.5730 34 1 9.3433 2.0675 -1.6856 35 1 10.1530 0.7370 -0.2817 36 1 10.2885 2.4624 0.1337 37 1 10.5046 1.8693 2.5312 38 1 10.3693 0.1436 2.1166 39 1 13.2427 0.2855 4.4162 40 1 5.9405 1.7074 0.8736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357791801.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:59 Heat of formation + Delta-G solvation = -110.615635 kcal Electronic energy + Delta-G solvation = -22638.090666 eV Core-core repulsion = 18946.221695 eV Total energy + Delta-G solvation = -3691.868971 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.26548 -40.71382 -39.29604 -37.25620 -34.75660 -34.41590 -33.34362 -30.91460 -30.04502 -29.16441 -27.73280 -25.05018 -23.57365 -22.43627 -21.96591 -21.01184 -20.33643 -18.58810 -18.00356 -17.06471 -16.43838 -16.25931 -15.83707 -15.49555 -15.41019 -15.32093 -15.05954 -14.59596 -14.36760 -14.07812 -13.52910 -13.33847 -13.03888 -12.76843 -12.69620 -12.33541 -12.30650 -11.83471 -11.71449 -11.53586 -11.44968 -11.33145 -10.93399 -10.83624 -10.56925 -10.38989 -9.91646 -9.83000 -9.63866 -9.28111 -8.44422 -8.35054 -7.86701 -6.08256 -4.13115 1.24065 1.58986 2.16481 2.50139 3.28599 3.34353 3.37238 3.73354 3.91582 3.96241 4.10075 4.17542 4.43035 4.44246 4.87190 4.95647 4.97328 5.13115 5.20169 5.27953 5.32122 5.39351 5.48646 5.62392 5.66369 5.77161 5.80382 6.02139 6.04866 6.18751 6.30741 6.48184 6.57821 6.73242 6.90987 7.02566 7.52768 7.66719 7.68854 7.82453 8.07422 8.25549 8.92503 9.50999 11.03358 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.024344 B = 0.002644 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.892651 B =10588.317274 C =11439.572411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.143 4.143 3 C 0.088 3.912 4 H 0.102 0.898 5 F -0.187 7.187 6 C 0.486 3.514 7 O -0.488 6.488 8 N -0.664 5.664 9 C 0.169 3.831 10 C -0.192 4.192 11 C -0.062 4.062 12 C -0.222 4.222 13 C 0.164 3.836 14 O -0.311 6.311 15 C 0.065 3.935 16 C 0.024 3.976 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.060 3.940 20 N -0.889 5.889 21 Si 0.899 3.101 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.162 4.162 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.412 0.588 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.263 0.737 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.645 3.990 -14.116 27.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.181 4.181 3 C 0.048 3.952 4 H 0.120 0.880 5 F -0.168 7.168 6 C 0.270 3.730 7 O -0.359 6.359 8 N -0.310 5.310 9 C 0.075 3.925 10 C -0.213 4.213 11 C -0.081 4.081 12 C -0.242 4.242 13 C 0.116 3.884 14 O -0.224 6.224 15 C -0.009 4.009 16 C -0.013 4.013 17 C -0.564 4.564 18 H 0.076 0.924 19 C -0.142 4.142 20 N -0.527 5.527 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.183 4.183 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.109 0.891 31 H 0.248 0.752 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.046 0.954 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -23.201 3.318 -13.176 26.886 hybrid contribution 0.937 0.414 -0.518 1.148 sum -22.264 3.731 -13.694 26.403 Atomic orbital electron populations 1.21772 0.93928 1.02832 1.02502 1.22022 0.97417 0.93213 1.05451 1.21606 0.91058 0.96735 0.85769 0.88027 1.92912 1.91895 1.83823 1.48140 1.21216 0.90706 0.80781 0.80303 1.90821 1.65543 1.38356 1.41211 1.43462 1.06613 1.36109 1.44785 1.17296 0.81640 1.00334 0.93190 1.20620 0.95715 1.10042 0.94898 1.20670 0.92408 0.96731 0.98282 1.21425 1.01190 1.08553 0.93004 1.18981 0.90409 0.91739 0.87317 1.86204 1.20141 1.82674 1.33395 1.23364 0.75098 0.99880 1.02589 1.19135 0.93446 0.98232 0.90462 1.20964 0.90550 1.48684 0.96249 0.92350 1.24999 0.99289 0.94995 0.94959 1.69978 1.34952 1.46575 1.01200 0.86480 0.84695 0.77917 0.78244 1.20505 1.21050 1.19768 1.20422 0.90326 1.07448 1.00055 0.91821 0.92339 0.91541 0.89604 0.89095 0.75167 0.85989 0.85568 0.84928 0.93010 0.93012 0.95366 0.95321 0.92691 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.83 37.16 0.37 -0.46 16 2 C -0.14 -1.04 5.41 -26.73 -0.14 -1.19 16 3 C 0.09 0.69 3.76 -27.88 -0.10 0.59 16 4 H 0.10 0.39 8.02 -51.93 -0.42 -0.03 16 5 F -0.19 -1.94 16.75 2.25 0.04 -1.90 16 6 C 0.49 5.57 7.01 -10.99 -0.08 5.50 16 7 O -0.49 -7.95 14.04 5.56 0.08 -7.87 16 8 N -0.66 -6.52 5.34 -9.88 -0.05 -6.58 16 9 C 0.17 2.24 6.30 -83.71 -0.53 1.71 16 10 C -0.19 -2.18 9.96 -39.37 -0.39 -2.58 16 11 C -0.06 -0.77 10.03 -39.63 -0.40 -1.17 16 12 C -0.22 -3.48 9.04 -39.39 -0.36 -3.83 16 13 C 0.16 3.02 6.68 -39.24 -0.26 2.76 16 14 O -0.31 -6.80 10.13 -19.43 -0.20 -7.00 16 15 C 0.06 1.42 4.68 37.16 0.17 1.60 16 16 C 0.02 0.66 5.34 -27.88 -0.15 0.51 16 17 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 16 18 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 21 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 25 C -0.16 -2.78 8.63 -39.25 -0.34 -3.12 16 26 H 0.06 0.38 7.93 -51.93 -0.41 -0.03 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 31 H 0.41 2.26 8.73 -40.82 -0.36 1.90 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.13 2.01 6.29 -52.49 -0.33 1.68 16 35 H 0.05 1.08 7.67 -51.93 -0.40 0.68 16 36 H 0.05 1.07 7.65 -51.93 -0.40 0.67 16 37 H 0.03 0.80 8.14 -51.92 -0.42 0.38 16 38 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 40 H 0.14 2.73 6.22 -52.49 -0.33 2.40 16 LS Contribution 345.09 15.07 5.20 5.20 Total: -1.00 -34.22 345.09 -7.40 -41.61 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.56 Total: -0.53 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -2.62 Total: -13.25 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.68 Total: -32.74 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.12 Total: -14.87 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.22 -7.40 -41.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357791801.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.002 kcal (2) G-P(sol) polarization free energy of solvation -34.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds