Wall clock time and date at job start Tue Mar 31 2020 08:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47000 * 2 1 4 4 H 1.09005 * 109.46965 * 305.00098 * 3 2 1 5 5 F 1.39906 * 109.47198 * 64.99876 * 3 2 1 6 6 C 1.50701 * 109.47330 * 184.99830 * 3 2 1 7 7 O 1.21283 * 119.99729 * 315.00398 * 6 3 2 8 8 N 1.34775 * 119.99767 * 134.99958 * 6 3 2 9 9 C 1.39928 * 119.99943 * 184.62565 * 8 6 3 10 10 C 1.38930 * 120.04475 * 144.92583 * 9 8 6 11 11 C 1.38118 * 120.03957 * 179.97438 * 10 9 8 12 12 C 1.38215 * 120.12460 * 359.76867 * 11 10 9 13 13 C 1.38769 * 120.08313 * 0.50820 * 12 11 10 14 14 O 1.35901 * 120.02017 * 179.73936 * 13 12 11 15 15 C 1.42898 * 116.99839 * 359.72964 * 14 13 12 16 16 C 1.53000 * 109.47100 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47426 * 180.02562 * 16 15 14 18 18 H 1.08005 * 119.99641 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00271 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99865 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99986 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47460 * 89.99920 * 21 19 17 23 23 H 1.48500 * 109.46804 * 210.00044 * 21 19 17 24 24 H 1.48504 * 109.47166 * 329.99667 * 21 19 17 25 25 C 1.38627 * 119.95856 * 359.46855 * 13 12 11 26 26 H 1.08996 * 109.46857 * 299.99970 * 1 2 3 27 27 H 1.08996 * 109.47126 * 60.00171 * 1 2 3 28 28 H 1.09001 * 109.46865 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47519 * 240.00335 * 2 1 3 30 30 H 1.08996 * 109.47126 * 119.99829 * 2 1 3 31 31 H 0.97001 * 120.00459 * 4.61990 * 8 6 3 32 32 H 1.08000 * 119.97590 * 359.97438 * 10 9 8 33 33 H 1.07995 * 119.93679 * 180.02562 * 11 10 9 34 34 H 1.07997 * 119.96253 * 180.27411 * 12 11 10 35 35 H 1.08998 * 109.47190 * 299.99705 * 15 14 13 36 36 H 1.08999 * 109.47615 * 59.99785 * 15 14 13 37 37 H 1.09008 * 109.47021 * 300.00003 * 16 15 14 38 38 H 1.08999 * 109.47352 * 59.99825 * 16 15 14 39 39 H 0.96999 * 120.00373 * 179.97438 * 20 19 17 40 40 H 1.08001 * 120.05753 * 180.24767 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 9 1.6698 2.0681 1.1954 6 6 3.5419 1.4444 -0.1238 7 8 4.2064 0.6812 0.5447 8 7 4.1466 2.2942 -0.9774 9 6 5.5319 2.2304 -1.1643 10 6 6.0776 2.4886 -2.4155 11 6 7.4450 2.4261 -2.5997 12 6 8.2741 2.1114 -1.5396 13 6 7.7341 1.8468 -0.2890 14 8 8.5501 1.5323 0.7513 15 6 9.9532 1.4864 0.4842 16 6 10.7045 1.1195 1.7656 17 6 12.1842 1.0717 1.4842 18 1 12.5520 1.2824 0.4908 19 6 13.0685 0.7601 2.4951 20 7 12.6207 0.5051 3.7051 21 14 14.9027 0.7015 2.1464 22 1 15.4942 2.0434 2.3802 23 1 15.5466 -0.2872 3.0481 24 1 15.1255 0.3017 0.7337 25 6 6.3622 1.9091 -0.1000 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.6216 2.9501 -1.4623 32 1 5.4321 2.7385 -3.2446 33 1 7.8675 2.6276 -3.5730 34 1 9.3433 2.0675 -1.6856 35 1 10.1530 0.7370 -0.2817 36 1 10.2885 2.4624 0.1337 37 1 10.5046 1.8693 2.5312 38 1 10.3693 0.1436 2.1166 39 1 13.2427 0.2855 4.4162 40 1 5.9405 1.7074 0.8736 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001357791801.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:58 Heat of formation + Delta-G solvation = -133.320964 kcal Electronic energy + Delta-G solvation = -22639.075243 eV Core-core repulsion = 18946.221695 eV Total energy + Delta-G solvation = -3692.853548 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.00997 -41.76333 -40.59366 -38.53817 -35.88614 -35.40392 -35.00637 -32.62823 -31.28163 -30.50672 -28.46709 -27.01283 -24.62153 -23.60082 -23.23948 -22.14726 -21.54635 -19.79787 -18.96155 -18.43328 -17.78988 -17.37358 -16.99289 -16.85600 -16.78756 -16.56594 -16.27245 -16.04370 -15.37940 -14.81397 -14.56934 -14.48607 -14.35153 -14.30910 -13.96337 -13.44819 -13.31651 -13.20889 -12.92474 -12.76863 -12.68057 -12.57004 -12.24804 -12.04495 -11.88546 -11.81578 -11.62014 -11.44317 -11.29022 -10.89857 -10.64514 -9.51562 -9.07926 -8.28263 -6.42940 0.13608 0.44848 1.22778 1.39640 1.42859 1.53992 1.65448 2.25855 2.48965 2.77204 3.05945 3.23303 3.46524 3.62947 3.85531 3.88362 4.12579 4.17833 4.22769 4.24030 4.36887 4.40584 4.47119 4.54181 4.66049 4.71749 4.72195 5.03444 5.13444 5.20666 5.22944 5.28619 5.34552 5.37506 5.42159 5.48188 5.65656 5.85569 6.04055 6.19193 6.52876 6.72112 6.87915 7.27485 8.85310 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.024344 B = 0.002644 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.892651 B =10588.317274 C =11439.572411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.093 3.907 4 H 0.158 0.842 5 F -0.202 7.202 6 C 0.480 3.520 7 O -0.546 6.546 8 N -0.644 5.644 9 C 0.170 3.830 10 C -0.166 4.166 11 C -0.053 4.053 12 C -0.230 4.230 13 C 0.121 3.879 14 O -0.347 6.347 15 C 0.085 3.915 16 C 0.026 3.974 17 C -0.545 4.545 18 H 0.075 0.925 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.981 3.019 22 H -0.269 1.269 23 H -0.282 1.282 24 H -0.257 1.257 25 C -0.189 4.189 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.437 0.563 32 H 0.175 0.825 33 H 0.169 0.831 34 H 0.134 0.866 35 H 0.062 0.938 36 H 0.066 0.934 37 H -0.004 1.004 38 H -0.006 1.006 39 H 0.267 0.733 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.556 5.356 -18.497 31.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C 0.054 3.946 4 H 0.176 0.824 5 F -0.183 7.183 6 C 0.266 3.734 7 O -0.422 6.422 8 N -0.293 5.293 9 C 0.075 3.925 10 C -0.186 4.186 11 C -0.071 4.071 12 C -0.250 4.250 13 C 0.075 3.925 14 O -0.262 6.262 15 C 0.011 3.989 16 C -0.011 4.011 17 C -0.582 4.582 18 H 0.093 0.907 19 C -0.200 4.200 20 N -0.573 5.573 21 Si 0.804 3.196 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.180 1.180 25 C -0.210 4.210 26 H 0.073 0.927 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.078 0.922 31 H 0.279 0.721 32 H 0.192 0.808 33 H 0.187 0.813 34 H 0.152 0.848 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.014 0.986 38 H 0.012 0.988 39 H 0.076 0.924 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -24.169 4.728 -17.606 30.273 hybrid contribution 1.051 0.010 0.791 1.316 sum -23.118 4.737 -16.814 28.976 Atomic orbital electron populations 1.21758 0.92069 1.03447 1.03262 1.22045 0.98903 0.92786 1.04514 1.21884 0.88227 0.97775 0.86722 0.82450 1.92884 1.91714 1.84117 1.49605 1.22044 0.92300 0.79816 0.79221 1.90817 1.67174 1.40788 1.43398 1.43376 1.05396 1.36116 1.44373 1.17457 0.82808 0.99248 0.92963 1.21172 0.96015 1.06488 0.94898 1.21188 0.92580 0.94535 0.98812 1.21574 1.01872 1.08871 0.92659 1.19290 0.90450 0.94883 0.87874 1.86103 1.19921 1.84333 1.35840 1.22904 0.75601 1.00729 0.99696 1.18988 0.94559 0.95365 0.92184 1.21394 0.91076 1.48636 0.97133 0.90723 1.26128 1.05237 0.94162 0.94507 1.70140 1.37123 1.47536 1.02508 0.85217 0.77356 0.78291 0.78780 1.19392 1.20734 1.18047 1.20386 0.90592 1.09692 1.00303 0.92678 0.89881 0.91097 0.88547 0.92219 0.72149 0.80773 0.81331 0.84844 0.91930 0.91591 0.98598 0.98796 0.92431 0.87201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.83 71.98 0.71 -0.60 16 2 C -0.14 -1.98 5.41 30.60 0.17 -1.81 16 3 C 0.09 1.29 3.76 29.85 0.11 1.40 16 4 H 0.16 0.45 8.02 -2.38 -0.02 0.43 16 5 F -0.20 -4.05 16.75 44.97 0.75 -3.29 16 6 C 0.48 10.78 7.01 87.66 0.61 11.40 16 7 O -0.55 -19.00 14.04 -3.04 -0.04 -19.05 16 8 N -0.64 -11.14 5.34 -303.55 -1.62 -12.76 16 9 C 0.17 4.22 6.30 38.14 0.24 4.46 16 10 C -0.17 -3.00 9.96 22.41 0.22 -2.77 16 11 C -0.05 -1.10 10.03 22.24 0.22 -0.87 16 12 C -0.23 -6.99 9.04 22.39 0.20 -6.78 16 13 C 0.12 4.69 6.68 22.49 0.15 4.84 16 14 O -0.35 -16.43 10.13 -92.43 -0.94 -17.37 16 15 C 0.08 3.93 4.68 71.98 0.34 4.27 16 16 C 0.03 1.51 5.34 29.85 0.16 1.67 16 17 C -0.54 -31.60 9.11 25.60 0.23 -31.37 16 18 H 0.07 3.99 7.74 -2.91 -0.02 3.96 16 19 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 20 N -0.93 -58.71 13.29 21.45 0.28 -58.42 16 21 Si 0.98 44.31 29.54 68.60 2.03 46.34 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 24 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 25 C -0.19 -6.82 8.63 22.49 0.19 -6.63 16 26 H 0.05 0.59 7.93 -2.39 -0.02 0.57 16 27 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.19 8.05 -2.39 -0.02 1.17 16 31 H 0.44 2.85 8.73 -92.71 -0.81 2.04 16 32 H 0.17 1.43 8.06 -2.91 -0.02 1.40 16 33 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.13 3.93 6.29 -2.91 -0.02 3.91 16 35 H 0.06 2.70 7.67 -2.39 -0.02 2.68 16 36 H 0.07 2.80 7.65 -2.39 -0.02 2.78 16 37 H 0.00 -0.28 8.14 -2.38 -0.02 -0.30 16 38 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 39 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 40 H 0.11 4.65 6.22 -2.91 -0.02 4.64 16 Total: -1.00 -82.83 345.09 4.73 -78.10 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 0.24 Total: 8.90 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 4.03 Total: -22.46 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -1.33 Total: -71.18 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -0.98 Total: -36.41 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.75 Total: -3.29 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -82.83 4.73 -78.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357791801.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.221 kcal (2) G-P(sol) polarization free energy of solvation -82.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds