Wall clock time and date at job start Tue Mar 31 2020 08:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47113 * 2 1 4 4 H 1.09000 * 109.47165 * 54.99861 * 3 2 1 5 5 F 1.39906 * 109.47117 * 294.99737 * 3 2 1 6 6 C 1.50706 * 109.47276 * 174.99972 * 3 2 1 7 7 O 1.21286 * 120.00189 * 44.99702 * 6 3 2 8 8 N 1.34773 * 119.99707 * 224.99964 * 6 3 2 9 9 C 1.39920 * 120.00098 * 185.27535 * 8 6 3 10 10 C 1.38933 * 120.04558 * 213.34612 * 9 8 6 11 11 C 1.38121 * 120.04206 * 179.97438 * 10 9 8 12 12 C 1.38212 * 120.12264 * 359.67555 * 11 10 9 13 13 C 1.38762 * 120.08727 * 0.59778 * 12 11 10 14 14 O 1.35890 * 120.02407 * 179.69881 * 13 12 11 15 15 C 1.42900 * 116.99899 * 359.72741 * 14 13 12 16 16 C 1.52998 * 109.47251 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47319 * 180.02562 * 16 15 14 18 18 H 1.08000 * 120.00048 * 359.97438 * 17 16 15 19 19 C 1.37882 * 120.00327 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00398 * 179.97438 * 19 17 16 21 21 Si 1.86807 * 119.99673 * 359.97438 * 19 17 16 22 22 H 1.48508 * 109.46886 * 90.00414 * 21 19 17 23 23 H 1.48498 * 109.47047 * 210.00105 * 21 19 17 24 24 H 1.48499 * 109.47081 * 330.00487 * 21 19 17 25 25 C 1.38627 * 119.95725 * 359.42459 * 13 12 11 26 26 H 1.09001 * 109.47065 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47417 * 299.99948 * 1 2 3 28 28 H 1.08999 * 109.46844 * 60.00340 * 1 2 3 29 29 H 1.09003 * 109.47760 * 240.00124 * 2 1 3 30 30 H 1.08999 * 109.47334 * 119.99859 * 2 1 3 31 31 H 0.97008 * 120.00627 * 5.27212 * 8 6 3 32 32 H 1.08004 * 119.97719 * 359.97409 * 10 9 8 33 33 H 1.07999 * 119.93532 * 179.97438 * 11 10 9 34 34 H 1.07999 * 119.95939 * 180.32466 * 12 11 10 35 35 H 1.09000 * 109.47213 * 300.00146 * 15 14 13 36 36 H 1.08999 * 109.47305 * 60.00346 * 15 14 13 37 37 H 1.09000 * 109.47259 * 300.00274 * 16 15 14 38 38 H 1.09003 * 109.47359 * 59.99636 * 16 15 14 39 39 H 0.96994 * 120.00344 * 179.97438 * 20 19 17 40 40 H 1.07997 * 120.06761 * 180.29331 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 9 1.6699 2.0680 -1.1955 6 6 3.5419 1.4443 0.1238 7 8 4.2065 0.6811 -0.5446 8 7 4.1466 2.2941 0.9774 9 6 5.5430 2.3742 1.0131 10 6 6.1942 2.6385 2.2115 11 6 7.5727 2.7171 2.2468 12 6 8.3081 2.5265 1.0921 13 6 7.6628 2.2678 -0.1088 14 8 8.3868 2.0867 -1.2444 15 6 9.8080 2.1822 -1.1299 16 6 10.4468 1.9507 -2.5007 17 6 11.9456 2.0508 -2.3799 18 1 12.3973 2.2591 -1.4213 19 6 12.7402 1.8775 -3.4933 20 7 14.0482 1.9654 -3.3879 21 14 11.9588 1.5179 -5.1515 22 1 11.6809 2.7958 -5.8553 23 1 12.8868 0.6948 -5.9679 24 1 10.6876 0.7774 -4.9495 25 6 6.2794 2.1887 -0.1483 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.6137 2.8504 1.5671 32 1 5.6221 2.7827 3.1162 33 1 8.0772 2.9230 3.1792 34 1 9.3861 2.5833 1.1237 35 1 10.0774 3.1736 -0.7658 36 1 10.1676 1.4280 -0.4300 37 1 10.1774 0.9591 -2.8644 38 1 10.0872 2.7046 -3.2012 39 1 14.6072 1.8431 -4.1711 40 1 5.7756 1.9828 -1.0811 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001357791805.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:01 Heat of formation + Delta-G solvation = -107.621912 kcal Electronic energy + Delta-G solvation = -22704.538385 eV Core-core repulsion = 19012.799231 eV Total energy + Delta-G solvation = -3691.739154 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.30450 -40.76928 -39.38282 -37.34731 -34.81882 -34.46020 -33.31991 -31.15001 -30.20813 -29.39289 -27.78455 -25.24818 -23.61038 -22.47842 -21.86742 -20.98053 -20.26635 -18.66799 -18.09894 -17.14607 -16.69358 -16.41730 -15.90923 -15.60156 -15.49859 -15.43280 -15.01490 -14.57093 -14.25629 -14.09035 -13.56182 -13.40541 -13.20223 -12.93308 -12.77603 -12.55279 -12.36085 -11.95634 -11.85570 -11.59744 -11.57651 -11.37316 -10.95765 -10.88709 -10.47517 -10.18962 -10.04185 -9.94643 -9.79668 -9.33398 -8.61215 -8.39680 -7.94091 -6.12518 -4.13374 1.17052 1.53056 2.12824 2.45078 3.30590 3.37771 3.44584 3.64574 3.85732 3.91786 4.04923 4.13381 4.39798 4.40878 4.83117 4.90576 4.93445 5.07770 5.15969 5.21802 5.26951 5.32842 5.44366 5.56133 5.61836 5.71394 5.73988 5.91255 5.92497 6.12578 6.23163 6.40046 6.45166 6.59802 6.81487 6.96730 7.10352 7.24802 7.62813 7.63512 7.90329 8.39534 8.87910 9.47965 10.99897 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.019823 B = 0.002929 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.132480 B = 9556.461601 C =10701.447136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.143 4.143 3 C 0.088 3.912 4 H 0.102 0.898 5 F -0.186 7.186 6 C 0.486 3.514 7 O -0.488 6.488 8 N -0.664 5.664 9 C 0.172 3.828 10 C -0.191 4.191 11 C -0.060 4.060 12 C -0.221 4.221 13 C 0.164 3.836 14 O -0.316 6.316 15 C 0.072 3.928 16 C -0.010 4.010 17 C -0.526 4.526 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.898 5.898 21 Si 0.880 3.120 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.262 1.262 25 C -0.162 4.162 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.412 0.588 32 H 0.123 0.877 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.028 0.972 38 H 0.024 0.976 39 H 0.266 0.734 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.078 0.651 13.634 30.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.181 4.181 3 C 0.048 3.952 4 H 0.120 0.880 5 F -0.167 7.167 6 C 0.270 3.730 7 O -0.359 6.359 8 N -0.310 5.310 9 C 0.079 3.921 10 C -0.212 4.212 11 C -0.079 4.079 12 C -0.241 4.241 13 C 0.116 3.884 14 O -0.229 6.229 15 C -0.002 4.002 16 C -0.047 4.047 17 C -0.564 4.564 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.707 3.293 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.187 1.187 25 C -0.183 4.183 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.249 0.751 32 H 0.141 0.859 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -26.535 0.040 12.761 29.444 hybrid contribution -0.282 0.261 -0.438 0.582 sum -26.817 0.300 12.323 29.514 Atomic orbital electron populations 1.21773 0.93914 1.02839 1.02538 1.22027 0.97456 0.93231 1.05411 1.21583 0.91070 0.96695 0.85839 0.88028 1.92915 1.91832 1.83834 1.48084 1.21218 0.90754 0.80555 0.80438 1.90828 1.65741 1.37342 1.42035 1.43495 1.05547 1.41357 1.40617 1.17270 0.81670 0.99856 0.93345 1.20631 0.94845 1.10057 0.95661 1.20694 0.92884 0.96578 0.97742 1.21437 1.01223 1.08742 0.92650 1.18888 0.90924 0.92321 0.86224 1.86146 1.21933 1.84839 1.29944 1.23116 0.74465 1.00539 1.02084 1.19595 0.96111 0.97901 0.91112 1.20830 0.88134 1.50178 0.97271 0.90724 1.24929 0.94676 0.94270 0.99118 1.69887 1.03616 1.49642 1.30447 0.86765 0.79775 0.78994 0.83805 1.20047 1.21166 1.18689 1.20248 0.91311 1.08117 0.98627 0.91542 0.92312 0.91812 0.89130 0.89608 0.75139 0.85907 0.85428 0.84756 0.92381 0.92363 0.95338 0.95808 0.92450 0.84337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.83 37.15 0.37 -0.41 16 2 C -0.14 -0.98 5.41 -26.74 -0.14 -1.13 16 3 C 0.09 0.66 3.78 -27.88 -0.11 0.55 16 4 H 0.10 0.35 7.98 -51.93 -0.41 -0.06 16 5 F -0.19 -1.89 16.75 2.25 0.04 -1.85 16 6 C 0.49 5.35 6.91 -10.98 -0.08 5.28 16 7 O -0.49 -7.68 14.29 5.55 0.08 -7.60 16 8 N -0.66 -6.23 5.34 -9.88 -0.05 -6.28 16 9 C 0.17 2.21 6.28 -83.72 -0.53 1.68 16 10 C -0.19 -2.11 9.96 -39.37 -0.39 -2.50 16 11 C -0.06 -0.73 10.03 -39.63 -0.40 -1.12 16 12 C -0.22 -3.36 9.04 -39.40 -0.36 -3.71 16 13 C 0.16 2.91 6.68 -39.24 -0.26 2.65 16 14 O -0.32 -6.53 10.13 -19.39 -0.20 -6.72 16 15 C 0.07 1.52 4.68 37.16 0.17 1.69 16 16 C -0.01 -0.24 4.41 -27.89 -0.12 -0.36 16 17 C -0.53 -14.99 9.66 -34.44 -0.33 -15.33 16 18 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 19 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 20 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 21 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 25 C -0.16 -2.68 8.59 -39.24 -0.34 -3.02 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.36 7.93 -51.93 -0.41 -0.05 16 29 H 0.09 0.79 8.05 -51.93 -0.42 0.38 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.41 2.05 8.70 -40.82 -0.36 1.70 16 32 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 33 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.13 1.99 6.29 -52.49 -0.33 1.66 16 35 H 0.06 1.16 7.67 -51.93 -0.40 0.76 16 36 H 0.06 1.18 7.65 -51.93 -0.40 0.78 16 37 H 0.03 0.72 7.20 -51.93 -0.37 0.34 16 38 H 0.02 0.59 7.57 -51.93 -0.39 0.19 16 39 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 40 H 0.14 2.50 6.41 -52.49 -0.34 2.17 16 LS Contribution 341.72 15.07 5.15 5.15 Total: -1.00 -34.45 341.72 -7.02 -41.47 By element: Atomic # 1 Polarization: 4.47 SS G_CDS: -5.53 Total: -1.06 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -2.61 Total: -13.71 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.72 Total: -32.99 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.12 Total: -14.32 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.45 -7.02 -41.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001357791805.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.150 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds