Wall clock time and date at job start Tue Mar 31 2020 08:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21604 * 119.99560 * 0.02562 * 14 13 3 16 16 N 1.34770 * 120.00511 * 180.02562 * 14 13 3 17 17 C 1.40402 * 120.00292 * 180.02562 * 16 14 13 18 18 C 1.35933 * 127.28693 * 0.02562 * 17 16 14 19 19 N 1.35805 * 107.06143 * 180.02562 * 18 17 16 20 20 C 1.46501 * 124.89797 * 180.02562 * 19 18 17 21 21 N 1.28439 * 110.20365 * 359.97438 * 19 18 17 22 22 C 1.31921 * 110.25646 * 359.71614 * 21 19 18 23 23 C 1.47500 * 126.47144 * 180.31128 * 22 21 19 24 24 N 1.34779 * 120.00454 * 0.15703 * 23 22 21 25 25 O 1.21594 * 119.99932 * 180.15552 * 23 22 21 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 31 31 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 32 32 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 33 33 H 0.97001 * 120.00095 * 359.97438 * 16 14 13 34 34 H 1.08000 * 126.46883 * 359.97308 * 18 17 16 35 35 H 1.08997 * 109.47488 * 89.99517 * 20 19 18 36 36 H 1.09004 * 109.46975 * 210.00104 * 20 19 18 37 37 H 1.09008 * 109.46916 * 329.99126 * 20 19 18 38 38 H 0.97000 * 119.99313 * 359.97438 * 24 23 22 39 39 H 0.96992 * 120.00085 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3417 2.6318 0.4318 16 7 0.0787 3.2675 2.5183 17 6 -1.1896 3.8576 2.6384 18 6 -2.1675 3.9069 1.6955 19 7 -3.2169 4.5718 2.2443 20 6 -4.4840 4.8469 1.5623 21 7 -2.9386 4.9239 3.4477 22 6 -1.7242 4.5229 3.7716 23 6 -1.0485 4.7304 5.0662 24 7 -1.6818 5.3850 6.0597 25 8 0.0799 4.3109 5.2372 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8293 -0.0604 -2.9502 32 1 2.2719 2.1232 1.9977 33 1 0.6982 3.2931 3.2643 34 1 -2.1189 3.4958 0.6980 35 1 -5.1788 4.0265 1.7419 36 1 -4.9094 5.7741 1.9462 37 1 -4.3064 4.9448 0.4913 38 1 -2.5818 5.7200 5.9232 39 1 -1.2376 5.5211 6.9111 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001477052610.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:59 Heat of formation + Delta-G solvation = 9.964795 kcal Electronic energy + Delta-G solvation = -23952.340027 eV Core-core repulsion = 20317.912528 eV Total energy + Delta-G solvation = -3634.427499 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.57240 -39.43872 -39.10140 -35.60708 -34.28547 -33.90533 -32.71022 -32.26593 -30.87928 -29.36170 -27.58023 -26.75133 -23.45722 -22.96666 -22.02083 -20.35369 -20.17252 -19.41743 -18.24339 -17.56738 -16.93781 -16.67319 -16.35191 -15.88381 -15.55784 -14.95072 -14.71314 -14.58017 -14.22049 -13.90658 -13.35014 -13.10500 -12.96523 -12.81290 -12.62611 -12.26217 -11.56488 -11.24256 -11.04985 -10.89977 -10.85050 -10.54965 -10.38314 -10.27862 -10.13839 -9.83413 -9.58228 -9.33512 -9.16984 -8.99710 -8.47937 -7.99982 -7.51334 -6.10021 -4.18421 1.49024 2.28222 2.38211 3.22321 3.26519 3.34532 3.34911 3.38327 3.56604 4.04491 4.31404 4.37721 4.84862 4.90814 4.99807 5.13382 5.16357 5.22482 5.39003 5.80132 6.04782 6.43715 6.51559 6.58355 6.69415 6.78958 7.07142 7.08071 7.18128 7.19994 7.40541 7.41878 7.51521 7.68747 7.84870 7.92375 8.07707 8.17106 8.22062 8.78782 8.90218 9.29841 9.50163 10.95464 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.021439 B = 0.003827 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.714525 B = 7315.340228 C = 8170.154698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.051 0.949 5 C -0.532 4.532 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.716 5.716 14 C 0.696 3.304 15 O -0.585 6.585 16 N -0.660 5.660 17 C 0.125 3.875 18 C -0.041 4.041 19 N -0.277 5.277 20 C 0.092 3.908 21 N -0.255 5.255 22 C -0.060 4.060 23 C 0.616 3.384 24 N -0.844 5.844 25 O -0.542 6.542 26 H 0.020 0.980 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.031 0.969 30 H 0.099 0.901 31 H 0.263 0.737 32 H 0.388 0.612 33 H 0.415 0.585 34 H 0.210 0.790 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.407 0.593 39 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.723 8.946 11.139 20.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.069 0.931 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.367 5.367 14 C 0.396 3.604 15 O -0.464 6.464 16 N -0.308 5.308 17 C 0.018 3.982 18 C -0.186 4.186 19 N -0.068 5.068 20 C -0.048 4.048 21 N -0.095 5.095 22 C -0.220 4.220 23 C 0.400 3.600 24 N -0.407 5.407 25 O -0.417 6.417 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.220 0.780 33 H 0.253 0.747 34 H 0.226 0.774 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.236 0.764 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -15.568 8.985 10.324 20.729 hybrid contribution 1.886 -0.220 0.540 1.974 sum -13.682 8.765 10.864 19.546 Atomic orbital electron populations 1.21815 0.98340 0.97860 1.01237 1.21960 0.92698 0.99887 1.02263 1.18732 0.94039 0.88873 0.79899 0.93144 1.21289 0.90714 1.38801 1.06286 0.91962 1.24868 0.98598 0.94815 0.95369 1.69908 1.34989 1.37789 1.09331 0.86394 0.84878 0.77737 0.78105 1.19721 1.20906 1.20923 1.45771 1.13130 1.58414 1.19383 1.16031 0.83726 0.78731 0.81893 1.90733 1.51884 1.65221 1.38525 1.42313 1.13990 1.57763 1.16778 1.17338 0.87639 1.00227 0.93012 1.23333 0.87082 1.05690 1.02479 1.45200 1.13804 1.39258 1.08574 1.22143 0.81274 1.03582 0.97802 1.73277 1.15651 1.20784 0.99740 1.21329 0.93621 1.10730 0.96355 1.16776 0.84442 0.76853 0.81887 1.43579 1.20767 1.60104 1.16230 1.90797 1.18201 1.51097 1.81635 0.96058 0.93158 0.94227 0.95036 0.88257 0.92663 0.77969 0.74732 0.77391 0.89743 0.88777 0.88344 0.76438 0.76502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.51 37.16 0.32 -2.70 16 2 C -0.13 -3.15 5.45 -26.73 -0.15 -3.30 16 3 C 0.29 7.22 2.24 -69.08 -0.15 7.06 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 6 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.60 11.29 55.43 0.63 -23.98 16 9 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.72 -15.35 5.03 -59.81 -0.30 -15.65 16 14 C 0.70 14.42 7.10 -86.92 -0.62 13.80 16 15 O -0.58 -13.15 10.76 5.27 0.06 -13.09 16 16 N -0.66 -11.84 5.45 -14.05 -0.08 -11.91 16 17 C 0.13 2.11 7.00 -83.37 -0.58 1.53 16 18 C -0.04 -0.63 10.36 -16.62 -0.17 -0.80 16 19 N -0.28 -3.33 3.72 -67.77 -0.25 -3.58 16 20 C 0.09 0.61 11.32 59.85 0.68 1.29 16 21 N -0.26 -3.26 11.65 33.46 0.39 -2.87 16 22 C -0.06 -0.88 7.13 -82.67 -0.59 -1.47 16 23 C 0.62 8.44 8.09 -12.48 -0.10 8.34 16 24 N -0.84 -7.49 8.87 30.45 0.27 -7.22 16 25 O -0.54 -8.94 16.19 5.28 0.09 -8.86 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 1.17 7.84 -51.93 -0.41 0.77 16 28 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 31 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 32 H 0.39 7.47 8.55 -40.82 -0.35 7.12 16 33 H 0.42 7.05 7.16 -40.82 -0.29 6.76 16 34 H 0.21 3.40 6.01 -52.49 -0.32 3.08 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.10 0.51 8.13 -51.92 -0.42 0.09 16 38 H 0.41 2.84 8.55 -40.82 -0.35 2.49 16 39 H 0.40 2.77 8.93 -40.82 -0.36 2.41 16 LS Contribution 328.01 15.07 4.94 4.94 Total: -1.00 -32.80 328.01 -5.77 -38.57 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -4.73 Total: 16.92 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: -1.77 Total: 11.01 kcal Atomic # 7 Polarization: -65.87 SS G_CDS: 0.66 Total: -65.22 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: 0.14 Total: -21.95 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.80 -5.77 -38.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477052610.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.534 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds