Wall clock time and date at job start Tue Mar 31 2020 08:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47316 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47182 * 120.00052 * 9 7 5 12 12 H 1.48492 * 109.47189 * 240.00072 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21604 * 119.99560 * 0.02562 * 14 13 3 16 16 N 1.34770 * 120.00511 * 180.02562 * 14 13 3 17 17 C 1.40402 * 120.00292 * 180.02562 * 16 14 13 18 18 C 1.35933 * 127.28693 * 0.02562 * 17 16 14 19 19 N 1.35805 * 107.06143 * 180.02562 * 18 17 16 20 20 C 1.46501 * 124.89797 * 180.02562 * 19 18 17 21 21 N 1.28439 * 110.20365 * 359.97438 * 19 18 17 22 22 C 1.31921 * 110.25646 * 359.71614 * 21 19 18 23 23 C 1.47500 * 126.47144 * 180.31128 * 22 21 19 24 24 N 1.34779 * 120.00454 * 0.15703 * 23 22 21 25 25 O 1.21594 * 119.99932 * 180.15552 * 23 22 21 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 31 31 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 32 32 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 33 33 H 0.97001 * 120.00095 * 359.97438 * 16 14 13 34 34 H 1.08000 * 126.46883 * 359.97308 * 18 17 16 35 35 H 1.08997 * 109.47488 * 89.99517 * 20 19 18 36 36 H 1.09004 * 109.46975 * 210.00104 * 20 19 18 37 37 H 1.09008 * 109.46916 * 329.99126 * 20 19 18 38 38 H 0.97000 * 119.99313 * 359.97438 * 24 23 22 39 39 H 0.96992 * 120.00085 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5987 1.5463 -0.1942 11 1 6.4971 -0.5175 -1.4628 12 1 6.3990 1.6166 -2.6101 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3417 2.6318 0.4318 16 7 0.0787 3.2675 2.5183 17 6 -1.1896 3.8576 2.6384 18 6 -2.1675 3.9069 1.6955 19 7 -3.2169 4.5718 2.2443 20 6 -4.4840 4.8469 1.5623 21 7 -2.9386 4.9239 3.4477 22 6 -1.7242 4.5229 3.7716 23 6 -1.0485 4.7304 5.0662 24 7 -1.6818 5.3850 6.0597 25 8 0.0799 4.3109 5.2372 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.8293 -0.0604 -2.9502 32 1 2.2719 2.1232 1.9977 33 1 0.6982 3.2931 3.2643 34 1 -2.1189 3.4958 0.6980 35 1 -5.1788 4.0265 1.7419 36 1 -4.9094 5.7741 1.9462 37 1 -4.3064 4.9448 0.4913 38 1 -2.5818 5.7200 5.9232 39 1 -1.2376 5.5211 6.9111 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001477052610.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:58 Heat of formation + Delta-G solvation = -17.222929 kcal Electronic energy + Delta-G solvation = -23953.518975 eV Core-core repulsion = 20317.912528 eV Total energy + Delta-G solvation = -3635.606447 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.143 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.66870 -41.05646 -40.15930 -37.35806 -35.79568 -34.86671 -34.35350 -33.58568 -32.63705 -30.66397 -28.86822 -28.27224 -25.15869 -24.21713 -23.41139 -21.77050 -21.50607 -21.17922 -19.44866 -19.09887 -18.03983 -17.76907 -17.60630 -17.38076 -17.06800 -16.47982 -16.40123 -15.67787 -15.58182 -15.17047 -15.05187 -14.52906 -14.20663 -14.13173 -13.62948 -13.50094 -13.45385 -13.16023 -12.85226 -12.68975 -12.17694 -12.14513 -12.03233 -11.94411 -11.52236 -11.49076 -11.06312 -10.97094 -10.73905 -10.51826 -10.18733 -9.73636 -8.90409 -8.14427 -6.30451 0.43075 1.04488 1.39401 1.45404 1.47454 1.58652 1.90943 2.15998 2.43164 2.52104 2.56607 3.15187 3.30663 3.57091 3.91559 4.14090 4.42956 4.45346 4.54314 4.61700 4.62804 4.72666 4.77294 4.86332 5.10923 5.28226 5.47952 5.55836 5.58315 5.64134 5.76987 5.83852 5.88448 5.91403 6.19267 6.27492 6.32572 6.76849 6.83679 7.22203 7.27291 7.37039 7.70003 8.91185 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.021439 B = 0.003827 C = 0.003426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.714525 B = 7315.340228 C = 8170.154698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.122 4.122 3 C 0.297 3.703 4 H 0.007 0.993 5 C -0.549 4.549 6 H 0.068 0.932 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.969 3.031 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.283 1.283 13 N -0.716 5.716 14 C 0.696 3.304 15 O -0.606 6.606 16 N -0.650 5.650 17 C 0.087 3.913 18 C -0.046 4.046 19 N -0.264 5.264 20 C 0.078 3.922 21 N -0.233 5.233 22 C -0.070 4.070 23 C 0.612 3.388 24 N -0.816 5.816 25 O -0.577 6.577 26 H 0.042 0.958 27 H 0.032 0.968 28 H 0.039 0.961 29 H 0.036 0.964 30 H 0.075 0.925 31 H 0.265 0.735 32 H 0.399 0.601 33 H 0.419 0.581 34 H 0.197 0.803 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.112 0.888 38 H 0.419 0.581 39 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.648 9.777 12.497 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.161 4.161 3 C 0.194 3.806 4 H 0.025 0.975 5 C -0.587 4.587 6 H 0.086 0.914 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.794 3.206 10 H -0.189 1.189 11 H -0.204 1.204 12 H -0.209 1.209 13 N -0.368 5.368 14 C 0.396 3.604 15 O -0.486 6.486 16 N -0.299 5.299 17 C -0.019 4.019 18 C -0.191 4.191 19 N -0.056 5.056 20 C -0.060 4.060 21 N -0.073 5.073 22 C -0.230 4.230 23 C 0.395 3.605 24 N -0.380 5.380 25 O -0.455 6.455 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.233 0.767 33 H 0.257 0.743 34 H 0.214 0.786 35 H 0.122 0.878 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.250 0.750 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -16.567 9.870 11.749 22.581 hybrid contribution 1.984 -0.388 0.127 2.025 sum -14.583 9.482 11.876 21.062 Atomic orbital electron populations 1.21636 0.96763 0.98950 1.00363 1.21812 0.94009 0.99123 1.01191 1.18322 0.93417 0.88909 0.79995 0.97541 1.21597 0.91480 1.38949 1.06696 0.91425 1.25694 1.03098 0.94352 0.94980 1.70040 1.36836 1.38324 1.09795 0.85347 0.79356 0.77823 0.78095 1.18889 1.20377 1.20861 1.45459 1.13899 1.58789 1.18654 1.16049 0.83208 0.78718 0.82425 1.90722 1.52395 1.65983 1.39527 1.42039 1.14778 1.57302 1.15748 1.17703 0.87529 1.01951 0.94716 1.23161 0.88028 1.05999 1.01925 1.45696 1.14376 1.37413 1.08114 1.22664 0.79274 1.05586 0.98446 1.73286 1.14510 1.19725 0.99828 1.21460 0.94079 1.10948 0.96504 1.16785 0.84136 0.77228 0.82328 1.43350 1.20988 1.58074 1.15635 1.90777 1.19668 1.52897 1.82205 0.93871 0.94863 0.94160 0.94502 0.90689 0.92546 0.76720 0.74271 0.78611 0.87752 0.86344 0.86950 0.75003 0.74987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.51 71.98 0.61 -4.79 16 2 C -0.12 -6.08 5.45 30.60 0.17 -5.91 16 3 C 0.30 15.39 2.24 44.25 0.10 15.49 16 4 H 0.01 0.40 7.58 -2.39 -0.02 0.39 16 5 C -0.55 -29.50 8.73 25.60 0.22 -29.27 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 7 C 0.02 1.03 5.29 84.66 0.45 1.48 16 8 N -0.91 -51.79 11.29 21.45 0.24 -51.55 16 9 Si 0.97 42.58 29.54 68.60 2.03 44.60 16 10 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 13 N -0.72 -31.32 5.03 -461.41 -2.32 -33.64 16 14 C 0.70 29.47 7.10 179.06 1.27 30.74 16 15 O -0.61 -28.05 10.76 -4.04 -0.04 -28.09 16 16 N -0.65 -23.64 5.45 -316.61 -1.73 -25.36 16 17 C 0.09 2.94 7.00 38.13 0.27 3.20 16 18 C -0.05 -1.39 10.36 83.54 0.87 -0.52 16 19 N -0.26 -5.85 3.72 -368.32 -1.37 -7.22 16 20 C 0.08 0.81 11.32 127.77 1.45 2.25 16 21 N -0.23 -5.47 11.65 -48.04 -0.56 -6.03 16 22 C -0.07 -1.99 7.13 42.47 0.30 -1.69 16 23 C 0.61 16.03 8.09 86.68 0.70 16.73 16 24 N -0.82 -12.72 8.87 -175.83 -1.56 -14.28 16 25 O -0.58 -18.80 16.19 -4.01 -0.06 -18.87 16 26 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 27 H 0.03 1.57 7.84 -2.39 -0.02 1.56 16 28 H 0.04 1.79 5.64 -2.38 -0.01 1.77 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 4.13 5.95 -2.39 -0.01 4.11 16 31 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 32 H 0.40 15.53 8.55 -92.71 -0.79 14.74 16 33 H 0.42 14.44 7.16 -92.71 -0.66 13.78 16 34 H 0.20 6.50 6.01 -2.91 -0.02 6.49 16 35 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.12 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.11 0.89 8.13 -2.38 -0.02 0.87 16 38 H 0.42 4.67 8.55 -92.71 -0.79 3.88 16 39 H 0.42 4.76 8.93 -92.71 -0.83 3.94 16 Total: -1.00 -71.92 328.01 -0.90 -72.81 By element: Atomic # 1 Polarization: 41.84 SS G_CDS: -1.93 Total: 39.91 kcal Atomic # 6 Polarization: 21.31 SS G_CDS: 6.40 Total: 27.72 kcal Atomic # 7 Polarization: -130.79 SS G_CDS: -7.29 Total: -138.08 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -0.11 Total: -46.96 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -71.92 -0.90 -72.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001477052610.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.590 kcal (2) G-P(sol) polarization free energy of solvation -71.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds