Wall clock time and date at job start Tue Mar 31 2020 06:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.46882 * 2 1 4 4 C 1.38312 * 119.96555 * 270.02126 * 3 2 1 5 5 C 1.38265 * 120.14848 * 180.02562 * 4 3 2 6 6 C 1.38125 * 120.07559 * 359.68691 * 5 4 3 7 7 C 1.38884 * 119.92223 * 0.56701 * 6 5 4 8 8 N 1.39803 * 120.07329 * 179.72249 * 7 6 5 9 9 C 1.34774 * 120.00494 * 324.24405 * 8 7 6 10 10 O 1.21631 * 119.99462 * 5.23636 * 9 8 7 11 11 C 1.47382 * 120.00475 * 185.23825 * 9 8 7 12 12 C 1.39249 * 120.28483 * 354.20739 * 11 9 8 13 13 C 1.38200 * 120.08969 * 180.30196 * 12 11 9 14 14 C 1.38838 * 120.68090 * 359.67301 * 13 12 11 15 15 C 1.37582 * 120.57619 * 0.02562 * 14 13 12 16 16 C 1.40718 * 119.88320 * 0.02562 * 15 14 13 17 17 C 1.40872 * 120.32967 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99368 * 146.90014 * 17 16 15 19 19 C 1.40274 * 119.99908 * 326.89402 * 17 16 15 20 20 N 1.30630 * 120.00461 * 338.77011 * 19 17 16 21 21 Si 1.86806 * 119.99763 * 158.76741 * 19 17 16 22 22 H 1.48504 * 109.46858 * 270.00400 * 21 19 17 23 23 H 1.48500 * 109.46828 * 29.99779 * 21 19 17 24 24 H 1.48495 * 109.47148 * 150.00229 * 21 19 17 25 25 C 1.38077 * 119.96385 * 90.00472 * 3 2 1 26 26 H 1.08994 * 109.47211 * 299.99448 * 1 2 3 27 27 H 1.08998 * 109.47737 * 59.99930 * 1 2 3 28 28 H 1.09006 * 109.46691 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46898 * 240.00661 * 2 1 3 30 30 H 1.08998 * 109.47737 * 120.00070 * 2 1 3 31 31 H 1.07997 * 119.92703 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.96624 * 180.02562 * 5 4 3 33 33 H 1.07997 * 120.04197 * 180.30006 * 6 5 4 34 34 H 0.97008 * 120.00057 * 144.23745 * 8 7 6 35 35 H 1.07996 * 119.95723 * 359.97438 * 12 11 9 36 36 H 1.08002 * 119.66304 * 179.69626 * 13 12 11 37 37 H 1.07998 * 119.71037 * 180.02562 * 14 13 12 38 38 H 1.08003 * 120.05942 * 180.02562 * 15 14 13 39 39 H 0.96993 * 119.99551 * 354.15226 * 20 19 17 40 40 H 1.08000 * 120.03578 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2621 2.0723 -1.1982 5 6 2.7234 3.3757 -1.2026 6 6 2.9502 4.0338 -0.0096 7 6 2.7254 3.3808 1.1954 8 7 2.9594 4.0419 2.4048 9 6 3.9850 4.9098 2.5110 10 8 4.6482 5.1903 1.5307 11 6 4.3030 5.5191 3.8148 12 6 3.4770 5.2972 4.9136 13 6 3.7755 5.8756 6.1328 14 6 4.9003 6.6760 6.2807 15 6 5.7388 6.9086 5.2151 16 6 5.4570 6.3326 3.9625 17 6 6.3089 6.5650 2.8648 18 1 6.4521 5.7959 2.1203 19 6 6.9709 7.7952 2.7390 20 7 6.5141 8.8495 3.3605 21 14 8.5061 7.9259 1.6827 22 1 9.7045 7.6482 2.5146 23 1 8.4315 6.9377 0.5767 24 1 8.6027 9.2956 1.1171 25 6 2.2622 2.0710 1.1962 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 2.0808 1.5618 -2.1325 32 1 2.9015 3.8818 -2.1400 33 1 3.3059 5.0535 -0.0137 34 1 2.3836 3.8760 3.1676 35 1 2.5990 4.6767 4.8118 36 1 3.1274 5.7029 6.9793 37 1 5.1189 7.1198 7.2407 38 1 6.6117 7.5323 5.3396 39 1 5.6719 8.8030 3.8393 40 1 2.0827 1.5617 2.1315 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001538503911.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:18 Heat of formation + Delta-G solvation = -6.406407 kcal Electronic energy + Delta-G solvation = -22587.699590 eV Core-core repulsion = 19331.118695 eV Total energy + Delta-G solvation = -3256.580895 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.02579 -38.53416 -37.04874 -34.69610 -34.02017 -33.31652 -30.50571 -29.71684 -29.38343 -28.45429 -25.36185 -23.96307 -23.11924 -21.96204 -21.24144 -20.68014 -19.23900 -18.26525 -17.04894 -16.25071 -15.90205 -15.22344 -14.80896 -14.41911 -14.37340 -14.07474 -14.00902 -13.71668 -13.42282 -13.21807 -12.91527 -12.72969 -12.33124 -12.13837 -11.93537 -11.70225 -11.47511 -11.22205 -11.08174 -10.97901 -10.82856 -10.75210 -10.41875 -10.21761 -9.79133 -9.70284 -9.13652 -8.67150 -8.44657 -7.92210 -7.73178 -7.65969 -7.23658 -4.55699 1.56538 1.62887 2.17449 2.66610 3.16034 3.26190 3.37607 3.70821 3.81049 3.98116 4.13519 4.54311 4.77555 4.90917 5.18359 5.27225 5.36522 5.37004 5.47915 5.60535 5.68445 5.71931 5.76746 5.84531 5.92026 6.06427 6.07047 6.08399 6.25701 6.40136 6.62788 6.66085 6.73774 6.82300 6.90709 6.94188 7.18710 7.40641 7.41872 7.51888 7.64638 7.79954 7.97955 8.11418 8.18361 8.63156 8.75386 9.14632 9.93709 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.017138 B = 0.004290 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.442706 B = 6524.911847 C = 7890.687577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 C -0.069 4.069 4 C -0.148 4.148 5 C -0.100 4.100 6 C -0.129 4.129 7 C 0.171 3.829 8 N -0.690 5.690 9 C 0.561 3.439 10 O -0.517 6.517 11 C -0.271 4.271 12 C -0.042 4.042 13 C -0.258 4.258 14 C -0.074 4.074 15 C -0.199 4.199 16 C 0.121 3.879 17 C -0.463 4.463 18 H 0.107 0.893 19 C 0.033 3.967 20 N -0.786 5.786 21 Si 1.071 2.929 22 H -0.274 1.274 23 H -0.272 1.272 24 H -0.275 1.275 25 C -0.156 4.156 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.141 0.859 34 H 0.402 0.598 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.299 0.701 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.040 -10.902 -4.096 14.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.070 4.070 4 C -0.167 4.167 5 C -0.118 4.118 6 C -0.149 4.149 7 C 0.075 3.925 8 N -0.336 5.336 9 C 0.357 3.643 10 O -0.394 6.394 11 C -0.276 4.276 12 C -0.061 4.061 13 C -0.278 4.278 14 C -0.093 4.093 15 C -0.218 4.218 16 C 0.116 3.884 17 C -0.489 4.489 18 H 0.124 0.876 19 C -0.190 4.190 20 N -0.409 5.409 21 Si 0.894 3.106 22 H -0.199 1.199 23 H -0.196 1.196 24 H -0.200 1.200 25 C -0.177 4.177 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.158 0.842 34 H 0.238 0.762 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.337 -9.547 -5.186 12.578 hybrid contribution -1.636 -1.102 1.155 2.285 sum -7.973 -10.649 -4.031 13.901 Atomic orbital electron populations 1.21741 0.94936 1.01354 1.02248 1.20500 0.95978 0.92862 1.02589 1.19552 0.98999 0.95736 0.92670 1.20863 1.03311 0.95440 0.97067 1.21016 0.98432 0.94663 0.97714 1.21430 1.01026 1.01642 0.90807 1.17827 0.97195 0.90928 0.86541 1.43764 1.32853 1.44899 1.12054 1.18538 0.78216 0.77685 0.89816 1.90684 1.49956 1.59720 1.39081 1.19232 1.01047 1.15608 0.91677 1.20707 0.96116 0.96216 0.93017 1.20243 1.01960 1.08595 0.96963 1.20756 0.94632 0.96738 0.97182 1.21260 1.01035 1.06717 0.92792 1.17464 0.88945 0.89243 0.92712 1.21246 1.18342 1.02052 1.07257 0.87576 1.27301 1.02784 0.91880 0.97022 1.70361 1.19341 1.30898 1.20251 0.83547 0.73647 0.77174 0.76245 1.19937 1.19636 1.20033 1.20732 1.06012 0.92942 0.98010 0.92582 0.92577 0.92673 0.91192 0.91249 0.86679 0.86174 0.84151 0.76219 0.89124 0.88760 0.88753 0.87435 0.88700 0.86310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.89 37.16 0.37 -0.89 16 2 C -0.08 -0.81 6.06 -27.89 -0.17 -0.98 16 3 C -0.07 -0.90 5.13 -104.66 -0.54 -1.43 16 4 C -0.15 -1.95 9.70 -39.54 -0.38 -2.33 16 5 C -0.10 -1.48 10.04 -39.61 -0.40 -1.88 16 6 C -0.13 -2.32 8.69 -39.38 -0.34 -2.66 16 7 C 0.17 2.99 6.29 -83.73 -0.53 2.46 16 8 N -0.69 -12.71 5.28 -10.85 -0.06 -12.77 16 9 C 0.56 12.89 7.56 -12.54 -0.09 12.80 16 10 O -0.52 -13.33 11.04 5.25 0.06 -13.27 16 11 C -0.27 -6.46 5.92 -104.37 -0.62 -7.07 16 12 C -0.04 -0.86 9.53 -39.22 -0.37 -1.23 16 13 C -0.26 -5.28 10.03 -39.37 -0.39 -5.68 16 14 C -0.07 -1.60 10.01 -39.60 -0.40 -2.00 16 15 C -0.20 -4.85 7.93 -38.89 -0.31 -5.16 16 16 C 0.12 3.15 5.17 -106.54 -0.55 2.60 16 17 C -0.46 -12.45 7.65 -37.82 -0.29 -12.74 16 18 H 0.11 3.00 5.95 -52.49 -0.31 2.68 16 19 C 0.03 0.83 5.00 -17.30 -0.09 0.75 16 20 N -0.79 -20.59 12.54 55.56 0.70 -19.90 16 21 Si 1.07 22.14 29.99 -169.99 -5.10 17.05 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 25 C -0.16 -2.28 9.62 -39.38 -0.38 -2.66 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 30 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 32 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 33 H 0.14 2.87 6.25 -52.49 -0.33 2.55 16 34 H 0.40 6.23 6.88 -40.82 -0.28 5.95 16 35 H 0.09 1.53 6.42 -52.49 -0.34 1.19 16 36 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 38 H 0.11 2.67 6.93 -52.48 -0.36 2.31 16 39 H 0.30 8.02 6.70 -40.82 -0.27 7.75 16 40 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 334.40 15.07 5.04 5.04 Total: -1.00 -28.94 334.40 -9.75 -38.69 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -4.91 Total: 13.27 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: -5.48 Total: -28.11 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.64 Total: -32.67 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.06 Total: -13.27 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.10 Total: 17.05 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.94 -9.75 -38.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538503911.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.288 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds