Wall clock time and date at job start Tue Mar 31 2020 06:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.46882 * 2 1 4 4 C 1.38312 * 119.96555 * 270.02126 * 3 2 1 5 5 C 1.38265 * 120.14848 * 180.02562 * 4 3 2 6 6 C 1.38125 * 120.07559 * 359.68691 * 5 4 3 7 7 C 1.38884 * 119.92223 * 0.56701 * 6 5 4 8 8 N 1.39803 * 120.07329 * 179.72249 * 7 6 5 9 9 C 1.34774 * 120.00494 * 324.24405 * 8 7 6 10 10 O 1.21631 * 119.99462 * 5.23636 * 9 8 7 11 11 C 1.47382 * 120.00475 * 185.23825 * 9 8 7 12 12 C 1.39249 * 120.28483 * 354.20739 * 11 9 8 13 13 C 1.38200 * 120.08969 * 180.30196 * 12 11 9 14 14 C 1.38838 * 120.68090 * 359.67301 * 13 12 11 15 15 C 1.37582 * 120.57619 * 0.02562 * 14 13 12 16 16 C 1.40718 * 119.88320 * 0.02562 * 15 14 13 17 17 C 1.40872 * 120.32967 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99368 * 146.90014 * 17 16 15 19 19 C 1.40274 * 119.99908 * 326.89402 * 17 16 15 20 20 N 1.30630 * 120.00461 * 338.77011 * 19 17 16 21 21 Si 1.86806 * 119.99763 * 158.76741 * 19 17 16 22 22 H 1.48504 * 109.46858 * 270.00400 * 21 19 17 23 23 H 1.48500 * 109.46828 * 29.99779 * 21 19 17 24 24 H 1.48495 * 109.47148 * 150.00229 * 21 19 17 25 25 C 1.38077 * 119.96385 * 90.00472 * 3 2 1 26 26 H 1.08994 * 109.47211 * 299.99448 * 1 2 3 27 27 H 1.08998 * 109.47737 * 59.99930 * 1 2 3 28 28 H 1.09006 * 109.46691 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46898 * 240.00661 * 2 1 3 30 30 H 1.08998 * 109.47737 * 120.00070 * 2 1 3 31 31 H 1.07997 * 119.92703 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.96624 * 180.02562 * 5 4 3 33 33 H 1.07997 * 120.04197 * 180.30006 * 6 5 4 34 34 H 0.97008 * 120.00057 * 144.23745 * 8 7 6 35 35 H 1.07996 * 119.95723 * 359.97438 * 12 11 9 36 36 H 1.08002 * 119.66304 * 179.69626 * 13 12 11 37 37 H 1.07998 * 119.71037 * 180.02562 * 14 13 12 38 38 H 1.08003 * 120.05942 * 180.02562 * 15 14 13 39 39 H 0.96993 * 119.99551 * 354.15226 * 20 19 17 40 40 H 1.08000 * 120.03578 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2621 2.0723 -1.1982 5 6 2.7234 3.3757 -1.2026 6 6 2.9502 4.0338 -0.0096 7 6 2.7254 3.3808 1.1954 8 7 2.9594 4.0419 2.4048 9 6 3.9850 4.9098 2.5110 10 8 4.6482 5.1903 1.5307 11 6 4.3030 5.5191 3.8148 12 6 3.4770 5.2972 4.9136 13 6 3.7755 5.8756 6.1328 14 6 4.9003 6.6760 6.2807 15 6 5.7388 6.9086 5.2151 16 6 5.4570 6.3326 3.9625 17 6 6.3089 6.5650 2.8648 18 1 6.4521 5.7959 2.1203 19 6 6.9709 7.7952 2.7390 20 7 6.5141 8.8495 3.3605 21 14 8.5061 7.9259 1.6827 22 1 9.7045 7.6482 2.5146 23 1 8.4315 6.9377 0.5767 24 1 8.6027 9.2956 1.1171 25 6 2.2622 2.0710 1.1962 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 2.0808 1.5618 -2.1325 32 1 2.9015 3.8818 -2.1400 33 1 3.3059 5.0535 -0.0137 34 1 2.3836 3.8760 3.1676 35 1 2.5990 4.6767 4.8118 36 1 3.1274 5.7029 6.9793 37 1 5.1189 7.1198 7.2407 38 1 6.6117 7.5323 5.3396 39 1 5.6719 8.8030 3.8393 40 1 2.0827 1.5617 2.1315 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001538503911.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:17 Heat of formation + Delta-G solvation = -20.984097 kcal Electronic energy + Delta-G solvation = -22588.331726 eV Core-core repulsion = 19331.118695 eV Total energy + Delta-G solvation = -3257.213031 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 295.131 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.53068 -40.00426 -38.72896 -36.25035 -35.66958 -34.49710 -32.16023 -31.39486 -30.67268 -29.72438 -27.20544 -25.02188 -24.62853 -23.31667 -22.81377 -22.16120 -20.74415 -20.06525 -18.59525 -17.71346 -17.17219 -16.63227 -16.36301 -16.10724 -16.03308 -15.59919 -15.24258 -15.16909 -14.52901 -14.46907 -14.31096 -14.12264 -13.99064 -13.75631 -13.20856 -13.02018 -12.79470 -12.64654 -12.51725 -12.45095 -12.08828 -11.97805 -11.89819 -11.68965 -11.50704 -11.18561 -10.98353 -10.38021 -9.71996 -9.67635 -9.55930 -9.21920 -8.98215 -6.51666 0.17506 0.44512 0.54578 0.87025 1.43927 1.59341 1.74511 2.12331 2.23644 2.27064 2.66377 2.87574 3.50904 3.83840 3.94838 4.11773 4.17682 4.23522 4.36361 4.40869 4.45190 4.55634 4.61902 4.67862 4.75115 4.77296 4.83951 5.08874 5.12165 5.13019 5.16482 5.36539 5.42357 5.43853 5.49717 5.60034 5.62196 5.67111 5.71524 5.84636 5.91744 6.13125 6.17311 6.28692 6.56733 6.77469 6.83327 7.43944 7.97440 Molecular weight = 295.13amu Principal moments of inertia in cm(-1) A = 0.017138 B = 0.004290 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.442706 B = 6524.911847 C = 7890.687577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.064 4.064 4 C -0.139 4.139 5 C -0.105 4.105 6 C -0.160 4.160 7 C 0.140 3.860 8 N -0.673 5.673 9 C 0.556 3.444 10 O -0.555 6.555 11 C -0.288 4.288 12 C -0.041 4.041 13 C -0.243 4.243 14 C -0.069 4.069 15 C -0.225 4.225 16 C 0.098 3.902 17 C -0.508 4.508 18 H 0.079 0.921 19 C 0.001 3.999 20 N -0.809 5.809 21 Si 1.115 2.885 22 H -0.254 1.254 23 H -0.276 1.276 24 H -0.266 1.266 25 C -0.151 4.151 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.149 0.851 32 H 0.136 0.864 33 H 0.102 0.898 34 H 0.416 0.584 35 H 0.135 0.865 36 H 0.138 0.862 37 H 0.126 0.874 38 H 0.091 0.909 39 H 0.284 0.716 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.161 -13.821 -3.462 17.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.065 4.065 4 C -0.157 4.157 5 C -0.123 4.123 6 C -0.180 4.180 7 C 0.046 3.954 8 N -0.320 5.320 9 C 0.351 3.649 10 O -0.435 6.435 11 C -0.293 4.293 12 C -0.059 4.059 13 C -0.262 4.262 14 C -0.088 4.088 15 C -0.244 4.244 16 C 0.094 3.906 17 C -0.535 4.535 18 H 0.097 0.903 19 C -0.216 4.216 20 N -0.433 5.433 21 Si 0.933 3.067 22 H -0.178 1.178 23 H -0.201 1.201 24 H -0.190 1.190 25 C -0.172 4.172 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.167 0.833 32 H 0.154 0.846 33 H 0.120 0.880 34 H 0.255 0.745 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.144 0.856 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.506 -12.499 -4.528 15.782 hybrid contribution -1.252 -0.422 1.014 1.666 sum -9.758 -12.921 -3.514 16.569 Atomic orbital electron populations 1.21731 0.93822 1.02557 1.01981 1.20586 0.96769 0.90439 1.03917 1.20034 0.97259 0.97302 0.91892 1.21269 1.01266 0.94418 0.98763 1.21229 0.98228 0.95690 0.97161 1.21300 1.03271 1.00652 0.92814 1.18059 0.99380 0.92339 0.85659 1.43393 1.31657 1.43748 1.13163 1.18597 0.78926 0.78153 0.89183 1.90673 1.51551 1.61178 1.40111 1.19634 1.01092 1.15208 0.93345 1.21149 0.96659 0.96125 0.91986 1.20812 1.01248 1.06125 0.98044 1.21180 0.94120 0.95932 0.97532 1.21217 1.01896 1.07937 0.93373 1.17849 0.89608 0.89939 0.93167 1.21135 1.21789 1.02558 1.08043 0.90259 1.28454 1.04657 0.91138 0.97304 1.70466 1.19229 1.31025 1.22542 0.83018 0.71371 0.77304 0.75029 1.17822 1.20074 1.19033 1.20978 1.04830 0.91530 0.99840 0.93116 0.92648 0.90788 0.89550 0.90362 0.83311 0.84645 0.88014 0.74543 0.84766 0.84389 0.85566 0.89071 0.90403 0.84099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.89 71.98 0.71 -1.19 16 2 C -0.08 -1.24 6.06 29.85 0.18 -1.06 16 3 C -0.06 -1.48 5.13 -19.89 -0.10 -1.58 16 4 C -0.14 -3.28 9.70 22.29 0.22 -3.07 16 5 C -0.10 -3.08 10.04 22.25 0.22 -2.86 16 6 C -0.16 -6.02 8.69 22.40 0.19 -5.82 16 7 C 0.14 4.92 6.29 38.19 0.24 5.16 16 8 N -0.67 -24.88 5.28 -306.48 -1.62 -26.50 16 9 C 0.56 26.61 7.56 86.65 0.65 27.27 16 10 O -0.56 -30.84 11.04 -4.13 -0.05 -30.88 16 11 C -0.29 -14.00 5.92 -19.70 -0.12 -14.12 16 12 C -0.04 -1.59 9.53 22.50 0.21 -1.37 16 13 C -0.24 -9.09 10.03 22.40 0.22 -8.87 16 14 C -0.07 -2.87 10.01 22.26 0.22 -2.65 16 15 C -0.22 -11.30 7.93 22.72 0.18 -11.12 16 16 C 0.10 5.38 5.17 -21.10 -0.11 5.27 16 17 C -0.51 -29.40 7.65 23.41 0.18 -29.22 16 18 H 0.08 4.90 5.95 -2.91 -0.02 4.88 16 19 C 0.00 0.05 5.00 85.37 0.43 0.47 16 20 N -0.81 -44.99 12.54 21.88 0.27 -44.72 16 21 Si 1.12 47.19 29.99 68.60 2.06 49.25 16 22 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 23 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 25 C -0.15 -4.10 9.62 22.40 0.22 -3.89 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.09 1.11 8.09 -2.39 -0.02 1.09 16 30 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 31 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 32 H 0.14 3.43 8.06 -2.91 -0.02 3.40 16 33 H 0.10 4.58 6.25 -2.91 -0.02 4.56 16 34 H 0.42 12.24 6.88 -92.70 -0.64 11.60 16 35 H 0.13 3.99 6.42 -2.91 -0.02 3.97 16 36 H 0.14 4.04 8.06 -2.91 -0.02 4.01 16 37 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 38 H 0.09 4.78 6.93 -2.91 -0.02 4.76 16 39 H 0.28 16.26 6.70 -92.71 -0.62 15.64 16 40 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -69.39 334.40 5.00 -64.39 By element: Atomic # 1 Polarization: 36.54 SS G_CDS: 0.57 Total: 37.12 kcal Atomic # 6 Polarization: -52.41 SS G_CDS: 3.76 Total: -48.66 kcal Atomic # 7 Polarization: -69.87 SS G_CDS: -1.34 Total: -71.21 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -0.05 Total: -30.88 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.06 Total: 49.25 kcal Total: -69.39 5.00 -64.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538503911.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.403 kcal (2) G-P(sol) polarization free energy of solvation -69.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds