Wall clock time and date at job start Tue Mar 31 2020 07:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47223 * 2 1 4 4 C 1.50701 * 109.47331 * 239.99772 * 2 1 3 5 5 H 1.07999 * 120.00237 * 240.00242 * 4 2 1 6 6 C 1.37876 * 119.99692 * 59.99682 * 4 2 1 7 7 N 1.31517 * 119.99954 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99973 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47144 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47123 * 120.00678 * 8 6 4 11 11 H 1.48502 * 109.46937 * 240.00421 * 8 6 4 12 12 C 1.53007 * 109.47223 * 119.99863 * 2 1 3 13 13 N 1.46900 * 109.47072 * 300.00160 * 12 2 1 14 14 C 1.46899 * 111.00113 * 179.97438 * 13 12 2 15 15 C 1.50699 * 109.47249 * 179.97438 * 14 13 12 16 16 C 1.38352 * 119.85814 * 260.27445 * 15 14 13 17 17 C 1.37930 * 120.17586 * 180.27641 * 16 15 14 18 18 C 1.39651 * 119.89716 * 359.72666 * 17 16 15 19 19 C 1.47740 * 120.13462 * 180.02562 * 18 17 16 20 20 O 1.21468 * 119.99791 * 179.97438 * 19 18 17 21 21 O 1.34705 * 120.00033 * 359.97438 * 19 18 17 22 22 C 1.39580 * 119.72995 * 359.97438 * 18 17 16 23 23 C 1.38198 * 119.81695 * 0.02562 * 22 18 17 24 24 F 1.35104 * 119.95219 * 180.02562 * 23 22 18 25 25 H 1.09001 * 109.47267 * 299.99922 * 1 2 3 26 26 H 1.08993 * 109.47170 * 59.99932 * 1 2 3 27 27 H 1.09005 * 109.47268 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47304 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47265 * 300.00204 * 3 2 1 30 30 H 1.09006 * 109.47283 * 60.00178 * 3 2 1 31 31 H 0.97008 * 119.99666 * 179.97438 * 7 6 4 32 32 H 1.08995 * 109.47077 * 179.97438 * 12 2 1 33 33 H 1.08999 * 109.46762 * 59.99633 * 12 2 1 34 34 H 1.00902 * 111.00104 * 56.04277 * 13 12 2 35 35 H 1.09004 * 109.47192 * 59.99693 * 14 13 12 36 36 H 1.09003 * 109.46962 * 300.00302 * 14 13 12 37 37 H 1.07997 * 119.91245 * 0.02562 * 16 15 14 38 38 H 1.07996 * 120.05343 * 179.70655 * 17 16 15 39 39 H 0.96699 * 116.99981 * 180.02562 * 21 19 18 40 40 H 1.07991 * 120.09370 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6033 8 14 2.3213 -1.1204 -4.0079 9 1 3.1465 -2.2870 -3.6038 10 1 1.1661 -1.5867 -4.8160 11 1 3.1466 -0.1874 -4.8164 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0287 2.4487 14 6 2.0209 -0.6952 3.6704 15 6 1.5003 0.0422 4.8772 16 6 2.3220 0.9287 5.5501 17 6 1.8541 1.6028 6.6588 18 6 0.5456 1.3939 7.0996 19 6 0.0388 2.1136 8.2861 20 8 -1.1000 1.9304 8.6671 21 8 0.8396 2.9729 8.9456 22 6 -0.2820 0.5033 6.4138 23 6 0.1987 -0.1660 5.3044 24 9 -0.6001 -1.0283 4.6382 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7094 1.1617 -3.4844 32 1 3.1300 -0.7216 1.2491 33 1 1.6766 -1.7489 1.2493 34 1 0.5438 0.0414 2.4402 35 1 3.1108 -0.6954 3.6874 36 1 1.6571 -1.7226 3.6869 37 1 3.3338 1.0903 5.2089 38 1 2.4988 2.2908 7.1855 39 1 0.4637 3.4200 9.7162 40 1 -1.2950 0.3377 6.7493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590615244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:13 Heat of formation + Delta-G solvation = -116.892964 kcal Electronic energy + Delta-G solvation = -23274.122772 eV Core-core repulsion = 19581.981596 eV Total energy + Delta-G solvation = -3692.141177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.02695 -40.69489 -38.99343 -36.94801 -36.43196 -34.37912 -31.99254 -30.92671 -30.33232 -26.70454 -25.57191 -25.21803 -23.98419 -23.20535 -22.43577 -21.23784 -18.69672 -18.49595 -17.93195 -16.66275 -16.22764 -16.07492 -16.00459 -15.68802 -15.53952 -14.92681 -14.51935 -14.22157 -14.03208 -13.76539 -13.30055 -13.01945 -12.66058 -12.36306 -12.29926 -11.98059 -11.88639 -11.86124 -11.37821 -11.14745 -11.01452 -10.93719 -10.65893 -10.56778 -10.19467 -10.08117 -9.41675 -9.36695 -9.12702 -8.96374 -8.62900 -8.30493 -7.82689 -5.92264 -4.02834 0.27087 0.91914 2.16613 2.58431 3.29837 3.33176 3.38340 3.41581 4.06145 4.38518 4.42425 4.47833 4.71809 4.73695 4.94573 4.99559 5.33400 5.39581 5.46173 5.71439 5.75508 5.79251 5.86119 6.10046 6.13272 6.26990 6.35009 6.51067 6.69146 6.87141 7.05283 7.15470 7.35218 7.42100 7.52133 7.63879 7.74749 7.80689 7.84753 8.19234 8.32760 8.53987 8.98679 9.62355 11.08314 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.033659 B = 0.002908 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.672555 B = 9624.747730 C = 9720.127728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.069 3.931 3 C -0.119 4.119 4 C -0.507 4.507 5 H 0.053 0.947 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.889 3.111 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.075 3.925 13 N -0.679 5.679 14 C 0.087 3.913 15 C -0.063 4.063 16 C -0.088 4.088 17 C -0.070 4.070 18 C -0.111 4.111 19 C 0.532 3.468 20 O -0.513 6.513 21 O -0.510 6.510 22 C -0.090 4.090 23 C 0.093 3.907 24 F -0.129 7.129 25 H 0.010 0.990 26 H 0.084 0.916 27 H 0.019 0.981 28 H 0.018 0.982 29 H 0.074 0.926 30 H 0.020 0.980 31 H 0.258 0.742 32 H 0.059 0.941 33 H 0.016 0.984 34 H 0.340 0.660 35 H 0.086 0.914 36 H 0.041 0.959 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.416 0.584 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.551 1.995 20.684 20.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.068 3.932 3 C -0.177 4.177 4 C -0.545 4.545 5 H 0.071 0.929 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.211 1.211 12 C -0.053 4.053 13 N -0.311 5.311 14 C -0.042 4.042 15 C -0.065 4.065 16 C -0.107 4.107 17 C -0.088 4.088 18 C -0.113 4.113 19 C 0.376 3.624 20 O -0.402 6.402 21 O -0.322 6.322 22 C -0.109 4.109 23 C 0.073 3.927 24 F -0.108 7.108 25 H 0.029 0.971 26 H 0.102 0.898 27 H 0.039 0.961 28 H 0.037 0.963 29 H 0.093 0.907 30 H 0.039 0.961 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.034 0.966 34 H 0.160 0.840 35 H 0.105 0.895 36 H 0.059 0.941 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.274 0.726 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 1.812 2.274 20.254 20.462 hybrid contribution -0.708 -1.142 -0.474 1.425 sum 1.104 1.132 19.780 19.843 Atomic orbital electron populations 1.21843 0.98478 0.98460 1.00306 1.18099 0.92139 0.93085 0.89830 1.21643 0.97771 0.98155 1.00123 1.21134 1.31148 1.11824 0.90426 0.92905 1.24890 0.95040 0.94947 0.98724 1.69849 1.36849 1.22760 1.22834 0.86594 0.78595 0.79712 0.83397 1.19952 1.21166 1.21109 1.22210 0.99062 0.94583 0.89481 1.60764 1.16802 1.53097 1.00454 1.20957 1.00927 0.94630 0.87678 1.20399 0.92033 0.97017 0.97043 1.20996 1.00726 0.94652 0.94281 1.21507 0.93994 0.97753 0.95542 1.18686 0.95553 1.01024 0.96013 1.20749 0.82749 0.76560 0.82345 1.90904 1.19544 1.63096 1.66645 1.84545 1.47523 1.55100 1.45013 1.21113 1.01052 0.95029 0.93691 1.17332 0.89031 0.93122 0.93218 1.91549 1.72750 1.67161 1.79329 0.97126 0.89751 0.96142 0.96256 0.90705 0.96146 0.93222 0.92255 0.96572 0.84046 0.89529 0.94089 0.83704 0.83749 0.72554 0.83355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 7.92 37.16 0.29 -2.87 16 2 C 0.07 1.65 0.57 -155.66 -0.09 1.56 16 3 C -0.12 -2.87 8.09 37.16 0.30 -2.57 16 4 C -0.51 -13.51 8.01 -34.44 -0.28 -13.79 16 5 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 6 C 0.06 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.88 -24.41 9.35 55.43 0.52 -23.89 16 8 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.07 1.52 4.59 -3.82 -0.02 1.50 16 13 N -0.68 -11.80 5.70 -115.05 -0.66 -12.46 16 14 C 0.09 1.20 5.52 -4.98 -0.03 1.18 16 15 C -0.06 -0.78 5.41 -104.46 -0.56 -1.34 16 16 C -0.09 -0.88 9.65 -39.65 -0.38 -1.27 16 17 C -0.07 -0.64 9.62 -39.17 -0.38 -1.01 16 18 C -0.11 -1.17 5.87 -104.99 -0.62 -1.79 16 19 C 0.53 5.40 8.27 34.61 0.29 5.68 16 20 O -0.51 -6.63 17.13 -19.24 -0.33 -6.96 16 21 O -0.51 -3.46 12.68 -40.50 -0.51 -3.98 16 22 C -0.09 -1.04 9.57 -39.10 -0.37 -1.42 16 23 C 0.09 1.18 7.23 -39.48 -0.29 0.90 16 24 F -0.13 -1.84 16.65 2.25 0.04 -1.81 16 25 H 0.01 0.22 6.57 -51.93 -0.34 -0.13 16 26 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 1.99 6.07 -51.93 -0.32 1.67 16 30 H 0.02 0.45 7.60 -51.93 -0.39 0.05 16 31 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.34 6.16 6.75 -39.29 -0.27 5.89 16 35 H 0.09 1.08 8.00 -51.93 -0.42 0.67 16 36 H 0.04 0.58 7.94 -51.93 -0.41 0.16 16 37 H 0.15 1.20 8.03 -52.49 -0.42 0.77 16 38 H 0.14 1.00 7.61 -52.49 -0.40 0.60 16 39 H 0.42 0.96 9.11 45.56 0.42 1.38 16 40 H 0.15 1.65 7.65 -52.49 -0.40 1.25 16 LS Contribution 337.86 15.07 5.09 5.09 Total: -1.00 -30.24 337.86 -7.59 -37.83 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -4.50 Total: 3.77 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -2.22 Total: -13.57 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: -0.14 Total: -36.35 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -0.84 Total: -10.94 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.24 -7.59 -37.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590615244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.063 kcal (2) G-P(sol) polarization free energy of solvation -30.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds