Wall clock time and date at job start Tue Mar 31 2020 07:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47223 * 2 1 4 4 C 1.50701 * 109.47331 * 239.99772 * 2 1 3 5 5 H 1.07999 * 120.00237 * 240.00242 * 4 2 1 6 6 C 1.37876 * 119.99692 * 59.99682 * 4 2 1 7 7 N 1.31517 * 119.99954 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99973 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47144 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47123 * 120.00678 * 8 6 4 11 11 H 1.48502 * 109.46937 * 240.00421 * 8 6 4 12 12 C 1.53007 * 109.47223 * 119.99863 * 2 1 3 13 13 N 1.46900 * 109.47072 * 300.00160 * 12 2 1 14 14 C 1.46899 * 111.00113 * 179.97438 * 13 12 2 15 15 C 1.50699 * 109.47249 * 179.97438 * 14 13 12 16 16 C 1.38352 * 119.85814 * 260.27445 * 15 14 13 17 17 C 1.37930 * 120.17586 * 180.27641 * 16 15 14 18 18 C 1.39651 * 119.89716 * 359.72666 * 17 16 15 19 19 C 1.47740 * 120.13462 * 180.02562 * 18 17 16 20 20 O 1.21468 * 119.99791 * 179.97438 * 19 18 17 21 21 O 1.34705 * 120.00033 * 359.97438 * 19 18 17 22 22 C 1.39580 * 119.72995 * 359.97438 * 18 17 16 23 23 C 1.38198 * 119.81695 * 0.02562 * 22 18 17 24 24 F 1.35104 * 119.95219 * 180.02562 * 23 22 18 25 25 H 1.09001 * 109.47267 * 299.99922 * 1 2 3 26 26 H 1.08993 * 109.47170 * 59.99932 * 1 2 3 27 27 H 1.09005 * 109.47268 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47304 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47265 * 300.00204 * 3 2 1 30 30 H 1.09006 * 109.47283 * 60.00178 * 3 2 1 31 31 H 0.97008 * 119.99666 * 179.97438 * 7 6 4 32 32 H 1.08995 * 109.47077 * 179.97438 * 12 2 1 33 33 H 1.08999 * 109.46762 * 59.99633 * 12 2 1 34 34 H 1.00902 * 111.00104 * 56.04277 * 13 12 2 35 35 H 1.09004 * 109.47192 * 59.99693 * 14 13 12 36 36 H 1.09003 * 109.46962 * 300.00302 * 14 13 12 37 37 H 1.07997 * 119.91245 * 0.02562 * 16 15 14 38 38 H 1.07996 * 120.05343 * 179.70655 * 17 16 15 39 39 H 0.96699 * 116.99981 * 180.02562 * 21 19 18 40 40 H 1.07991 * 120.09370 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6033 8 14 2.3213 -1.1204 -4.0079 9 1 3.1465 -2.2870 -3.6038 10 1 1.1661 -1.5867 -4.8160 11 1 3.1466 -0.1874 -4.8164 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0287 2.4487 14 6 2.0209 -0.6952 3.6704 15 6 1.5003 0.0422 4.8772 16 6 2.3220 0.9287 5.5501 17 6 1.8541 1.6028 6.6588 18 6 0.5456 1.3939 7.0996 19 6 0.0388 2.1136 8.2861 20 8 -1.1000 1.9304 8.6671 21 8 0.8396 2.9729 8.9456 22 6 -0.2820 0.5033 6.4138 23 6 0.1987 -0.1660 5.3044 24 9 -0.6001 -1.0283 4.6382 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7094 1.1617 -3.4844 32 1 3.1300 -0.7216 1.2491 33 1 1.6766 -1.7489 1.2493 34 1 0.5438 0.0414 2.4402 35 1 3.1108 -0.6954 3.6874 36 1 1.6571 -1.7226 3.6869 37 1 3.3338 1.0903 5.2089 38 1 2.4988 2.2908 7.1855 39 1 0.4637 3.4200 9.7162 40 1 -1.2950 0.3377 6.7493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590615244.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:12 Heat of formation + Delta-G solvation = -135.305896 kcal Electronic energy + Delta-G solvation = -23274.921217 eV Core-core repulsion = 19581.981596 eV Total energy + Delta-G solvation = -3692.939621 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.03652 -41.46925 -39.87017 -38.54860 -37.14363 -35.85694 -33.51401 -31.95793 -31.61793 -27.85932 -27.51299 -27.22454 -25.30168 -24.22062 -23.42115 -22.09196 -20.35030 -19.47353 -18.72349 -17.96298 -17.59003 -17.11847 -16.93673 -16.87565 -16.55863 -16.35844 -16.02360 -15.52506 -15.01654 -14.91301 -14.37439 -14.28069 -14.24957 -13.91907 -13.40995 -13.30082 -13.09922 -12.90587 -12.84600 -12.60877 -12.50825 -12.42649 -12.26275 -12.10876 -12.05590 -11.76735 -11.31253 -10.98316 -10.59652 -10.34613 -10.18881 -9.87105 -9.23747 -7.96122 -6.13050 -0.57050 0.08230 1.36136 1.41968 1.45473 1.54632 1.90694 2.46213 2.51176 3.18305 3.26318 3.40192 3.60494 3.69449 3.94866 3.98912 4.11954 4.45042 4.50489 4.63181 4.65345 4.72094 4.86971 4.95058 4.98638 5.02296 5.07337 5.17270 5.27697 5.29446 5.44316 5.52087 5.54257 5.67046 5.70880 5.77395 6.10759 6.21134 6.32101 6.45116 6.55716 6.91761 6.96673 7.54792 9.02288 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.033659 B = 0.002908 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.672555 B = 9624.747730 C = 9720.127728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.059 3.941 3 C -0.105 4.105 4 C -0.524 4.524 5 H 0.047 0.953 6 C 0.021 3.979 7 N -0.904 5.904 8 Si 0.945 3.055 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.283 1.283 12 C 0.089 3.911 13 N -0.679 5.679 14 C 0.089 3.911 15 C -0.075 4.075 16 C -0.082 4.082 17 C -0.053 4.053 18 C -0.116 4.116 19 C 0.539 3.461 20 O -0.547 6.547 21 O -0.496 6.496 22 C -0.097 4.097 23 C 0.074 3.926 24 F -0.145 7.145 25 H 0.028 0.972 26 H 0.056 0.944 27 H 0.014 0.986 28 H 0.016 0.984 29 H 0.046 0.954 30 H 0.033 0.967 31 H 0.257 0.743 32 H 0.061 0.939 33 H 0.009 0.991 34 H 0.335 0.665 35 H 0.104 0.896 36 H 0.036 0.964 37 H 0.169 0.831 38 H 0.175 0.825 39 H 0.437 0.563 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.075 2.573 22.180 22.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.059 3.941 3 C -0.163 4.163 4 C -0.563 4.563 5 H 0.065 0.935 6 C -0.178 4.178 7 N -0.544 5.544 8 Si 0.772 3.228 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.209 1.209 12 C -0.040 4.040 13 N -0.311 5.311 14 C -0.039 4.039 15 C -0.076 4.076 16 C -0.100 4.100 17 C -0.071 4.071 18 C -0.118 4.118 19 C 0.385 3.615 20 O -0.439 6.439 21 O -0.310 6.310 22 C -0.116 4.116 23 C 0.055 3.945 24 F -0.124 7.124 25 H 0.047 0.953 26 H 0.075 0.925 27 H 0.034 0.966 28 H 0.035 0.965 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.027 0.973 34 H 0.153 0.847 35 H 0.122 0.878 36 H 0.055 0.945 37 H 0.186 0.814 38 H 0.193 0.807 39 H 0.299 0.701 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.355 2.867 21.782 22.224 hybrid contribution -1.157 -1.253 -0.828 1.896 sum 2.198 1.613 20.954 21.130 Atomic orbital electron populations 1.21685 0.98642 0.97905 0.99780 1.18148 0.92033 0.93130 0.90796 1.21460 0.97361 0.98136 0.99315 1.21467 1.31133 1.11879 0.91833 0.93453 1.25549 0.95359 0.95639 1.01240 1.69984 1.37523 1.23669 1.23192 0.85709 0.78012 0.78786 0.80292 1.19500 1.21134 1.20878 1.21875 0.98929 0.93832 0.89365 1.60690 1.16336 1.53232 1.00823 1.20984 1.01869 0.94380 0.86669 1.20336 0.92150 0.98102 0.97028 1.21285 1.01365 0.93419 0.93953 1.21807 0.93419 0.97109 0.94783 1.18861 0.96100 1.00676 0.96143 1.20642 0.82291 0.76477 0.82108 1.90901 1.21059 1.64357 1.67599 1.84490 1.46667 1.54156 1.45717 1.21136 1.01294 0.95502 0.93692 1.17534 0.89392 0.93715 0.93902 1.91503 1.73285 1.67823 1.79770 0.95289 0.92512 0.96633 0.96524 0.93483 0.94783 0.93373 0.92052 0.97288 0.84680 0.87768 0.94544 0.81354 0.80743 0.70078 0.83744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 7.92 71.98 0.57 -5.27 16 2 C 0.06 2.84 0.57 -52.93 -0.03 2.81 16 3 C -0.10 -5.01 8.09 71.98 0.58 -4.43 16 4 C -0.52 -28.01 8.01 25.60 0.21 -27.81 16 5 H 0.05 2.52 7.74 -2.91 -0.02 2.50 16 6 C 0.02 1.14 5.15 84.65 0.44 1.57 16 7 N -0.90 -50.51 9.35 21.45 0.20 -50.31 16 8 Si 0.95 43.15 29.54 68.60 2.03 45.17 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 10 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 C 0.09 3.53 4.59 86.31 0.40 3.93 16 13 N -0.68 -22.77 5.70 -517.92 -2.95 -25.72 16 14 C 0.09 2.33 5.52 85.56 0.47 2.80 16 15 C -0.07 -1.71 5.41 -19.76 -0.11 -1.81 16 16 C -0.08 -1.38 9.65 22.22 0.21 -1.17 16 17 C -0.05 -0.79 9.62 22.54 0.22 -0.57 16 18 C -0.12 -2.21 5.87 -20.10 -0.12 -2.33 16 19 C 0.54 9.85 8.27 70.33 0.58 10.43 16 20 O -0.55 -13.63 17.13 19.94 0.34 -13.29 16 21 O -0.50 -5.11 12.68 -56.14 -0.71 -5.82 16 22 C -0.10 -2.20 9.57 22.58 0.22 -1.99 16 23 C 0.07 1.86 7.23 22.34 0.16 2.02 16 24 F -0.15 -4.20 16.65 44.97 0.75 -3.45 16 25 H 0.03 1.23 6.57 -2.39 -0.02 1.22 16 26 H 0.06 3.03 6.07 -2.39 -0.01 3.02 16 27 H 0.01 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 2.50 6.07 -2.39 -0.01 2.49 16 30 H 0.03 1.48 7.60 -2.38 -0.02 1.46 16 31 H 0.26 13.79 8.31 -92.70 -0.77 13.02 16 32 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16 34 H 0.33 11.86 6.75 -89.69 -0.61 11.25 16 35 H 0.10 2.33 8.00 -2.38 -0.02 2.31 16 36 H 0.04 0.99 7.94 -2.39 -0.02 0.97 16 37 H 0.17 2.05 8.03 -2.91 -0.02 2.03 16 38 H 0.18 1.55 7.61 -2.91 -0.02 1.53 16 39 H 0.44 0.62 9.11 -74.06 -0.67 -0.06 16 40 H 0.14 3.29 7.65 -2.92 -0.02 3.27 16 Total: -1.00 -64.95 337.86 3.25 -61.70 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -0.20 Total: 13.55 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 3.80 Total: -21.83 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -2.75 Total: -76.04 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.37 Total: -19.11 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.75 Total: -3.45 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -64.95 3.25 -61.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590615244.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.609 kcal (2) G-P(sol) polarization free energy of solvation -64.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds