Wall clock time and date at job start Tue Mar 31 2020 07:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47125 * 2 1 4 4 C 1.50696 * 109.47491 * 239.99509 * 2 1 3 5 5 H 1.08004 * 120.00248 * 240.00159 * 4 2 1 6 6 C 1.37879 * 120.00109 * 59.99954 * 4 2 1 7 7 N 1.31514 * 119.99523 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00396 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47022 * 60.00127 * 8 6 4 10 10 H 1.48503 * 109.47469 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47244 * 300.00093 * 8 6 4 12 12 C 1.53005 * 109.47056 * 119.99635 * 2 1 3 13 13 N 1.46900 * 109.46887 * 300.00119 * 12 2 1 14 14 C 1.46907 * 111.00001 * 180.02562 * 13 12 2 15 15 H 1.08998 * 109.46646 * 324.99831 * 14 13 12 16 16 C 1.50697 * 109.47216 * 84.99821 * 14 13 12 17 17 O 1.20832 * 119.99953 * 0.02562 * 16 14 13 18 18 O 1.34228 * 120.00322 * 180.02562 * 16 14 13 19 19 C 1.50696 * 109.47035 * 205.00046 * 14 13 12 20 20 C 1.38248 * 119.97128 * 139.99775 * 19 14 13 21 21 C 1.38196 * 120.02483 * 179.97438 * 20 19 14 22 22 C 1.38458 * 119.97492 * 0.02562 * 21 20 19 23 23 F 1.35104 * 120.02786 * 179.97438 * 22 21 20 24 24 C 1.38465 * 119.94675 * 0.24873 * 22 21 20 25 25 C 1.38197 * 119.97511 * 359.47283 * 24 22 21 26 26 H 1.08998 * 109.47415 * 299.99959 * 1 2 3 27 27 H 1.09003 * 109.47182 * 60.00525 * 1 2 3 28 28 H 1.09006 * 109.46818 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47300 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46610 * 299.99265 * 3 2 1 31 31 H 1.09000 * 109.47382 * 59.99467 * 3 2 1 32 32 H 0.97005 * 120.00111 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.47225 * 180.02562 * 12 2 1 34 34 H 1.08998 * 109.46938 * 59.99847 * 12 2 1 35 35 H 1.00901 * 111.00332 * 56.04657 * 13 12 2 36 36 H 0.96689 * 117.00426 * 180.02562 * 18 16 14 37 37 H 1.08002 * 119.98915 * 359.97438 * 20 19 14 38 38 H 1.07995 * 120.01604 * 180.02562 * 21 20 19 39 39 H 1.08007 * 120.01064 * 179.75151 * 24 22 21 40 40 H 1.07994 * 119.98821 * 180.29814 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9437 0.8300 -2.6034 8 14 2.3215 -1.1206 -4.0078 9 1 1.8259 -2.5205 -4.0075 10 1 1.8261 -0.4210 -5.2204 11 1 3.8065 -1.1212 -4.0080 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0286 2.4487 14 6 2.0218 -0.6943 3.6704 15 1 2.0615 -1.7709 3.5053 16 6 3.3978 -0.1884 4.0191 17 8 3.9309 0.6419 3.3216 18 8 4.0313 -0.6601 5.1044 19 6 1.0744 -0.3945 4.8034 20 6 0.7431 -1.3865 5.7075 21 6 -0.1252 -1.1126 6.7472 22 6 -0.6638 0.1557 6.8828 23 9 -1.5132 0.4245 7.8985 24 6 -0.3357 1.1469 5.9733 25 6 0.5373 0.8722 4.9378 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 0.7096 1.1616 -3.4845 33 1 3.1300 -0.7208 1.2496 34 1 1.6766 -1.7488 1.2494 35 1 0.5437 0.0415 2.4402 36 1 4.9120 -0.3054 5.2875 37 1 1.1630 -2.3758 5.6013 38 1 -0.3835 -1.8875 7.4537 39 1 -0.7584 2.1355 6.0758 40 1 0.7971 1.6465 4.2311 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590615317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:47 Heat of formation + Delta-G solvation = -107.985128 kcal Electronic energy + Delta-G solvation = -23955.620325 eV Core-core repulsion = 20263.865421 eV Total energy + Delta-G solvation = -3691.754904 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.05390 -40.42390 -39.00294 -36.97896 -35.79333 -34.32406 -31.69291 -31.31553 -29.88312 -26.73951 -25.57399 -25.20916 -23.97270 -23.07812 -22.45712 -20.58611 -18.58306 -18.05702 -17.74457 -16.69974 -16.53742 -16.19634 -15.74542 -15.62634 -15.02573 -14.81730 -14.34946 -14.07899 -13.82302 -13.68190 -13.37824 -13.02270 -12.89623 -12.40387 -12.26607 -12.02258 -11.74100 -11.29513 -11.20321 -11.09240 -11.01715 -10.64866 -10.61047 -10.39063 -10.19139 -10.03785 -9.38656 -9.27024 -9.16398 -8.74909 -8.63968 -8.29082 -7.97601 -5.90804 -4.01229 0.88438 1.07544 2.43932 3.03607 3.33237 3.38123 3.40383 3.44241 4.07866 4.37156 4.46865 4.52600 4.71638 4.72895 5.11756 5.16435 5.34138 5.34818 5.45617 5.72670 5.78677 5.93987 6.06403 6.21599 6.24863 6.34068 6.62476 6.68015 6.70504 6.85375 7.02610 7.16661 7.32264 7.43397 7.60458 7.75256 7.76934 7.83315 8.13905 8.21816 8.33986 8.55017 8.99236 9.63529 11.09722 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.021968 B = 0.003812 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.269753 B = 7344.017466 C = 7960.094636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.072 3.928 3 C -0.116 4.116 4 C -0.508 4.508 5 H 0.051 0.949 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.889 3.111 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.074 3.926 13 N -0.662 5.662 14 C 0.142 3.858 15 H 0.086 0.914 16 C 0.477 3.523 17 O -0.477 6.477 18 O -0.524 6.524 19 C -0.101 4.101 20 C -0.068 4.068 21 C -0.157 4.157 22 C 0.100 3.900 23 F -0.142 7.142 24 C -0.155 4.155 25 C -0.064 4.064 26 H 0.010 0.990 27 H 0.085 0.915 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.072 0.928 31 H 0.019 0.981 32 H 0.259 0.741 33 H 0.061 0.939 34 H 0.018 0.982 35 H 0.354 0.646 36 H 0.405 0.595 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.055 -2.995 18.358 18.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.071 3.929 3 C -0.174 4.174 4 C -0.547 4.547 5 H 0.069 0.931 6 C -0.135 4.135 7 N -0.522 5.522 8 Si 0.717 3.283 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.053 4.053 13 N -0.298 5.298 14 C 0.030 3.970 15 H 0.104 0.896 16 C 0.316 3.684 17 O -0.360 6.360 18 O -0.336 6.336 19 C -0.102 4.102 20 C -0.087 4.087 21 C -0.176 4.176 22 C 0.081 3.919 23 F -0.121 7.121 24 C -0.174 4.174 25 C -0.082 4.082 26 H 0.029 0.971 27 H 0.103 0.897 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.091 0.909 31 H 0.039 0.961 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.037 0.963 35 H 0.177 0.823 36 H 0.263 0.737 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.914 -2.313 17.932 18.104 hybrid contribution 0.294 -1.030 -0.564 1.211 sum -0.621 -3.343 17.368 17.698 Atomic orbital electron populations 1.21855 0.98466 0.98414 1.00351 1.18072 0.92021 0.93262 0.89545 1.21606 0.98089 0.97813 0.99888 1.21037 1.31301 1.11874 0.90439 0.93074 1.24866 0.95021 0.94928 0.98649 1.69823 1.36732 1.22646 1.23032 0.86715 0.79211 0.79707 0.82636 1.20490 1.21359 1.20407 1.22325 0.99556 0.94206 0.89255 1.60234 1.16737 1.53475 0.99381 1.19769 0.87751 0.98421 0.91088 0.89630 1.23383 0.87968 0.79516 0.77532 1.90763 1.66175 1.29725 1.49353 1.84514 1.35756 1.67116 1.46218 1.19638 0.99104 0.94578 0.96831 1.20901 0.95661 0.99341 0.92776 1.21069 1.00186 0.95687 1.00645 1.17798 0.92304 0.94663 0.87159 1.91496 1.68360 1.94509 1.57686 1.21183 1.00902 0.99607 0.95661 1.21098 0.93990 0.96733 0.96423 0.97130 0.89681 0.96119 0.96100 0.90877 0.96145 0.93122 0.92005 0.96341 0.82323 0.73669 0.84668 0.84623 0.84485 0.83546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 7.92 37.16 0.29 -2.75 16 2 C 0.07 1.71 0.57 -155.66 -0.09 1.62 16 3 C -0.12 -2.87 8.09 37.16 0.30 -2.57 16 4 C -0.51 -13.58 8.01 -34.44 -0.28 -13.85 16 5 H 0.05 1.36 7.74 -52.48 -0.41 0.96 16 6 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 7 N -0.88 -24.33 9.35 55.43 0.52 -23.81 16 8 Si 0.89 21.07 29.54 -169.99 -5.02 16.04 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.07 1.51 4.28 -3.82 -0.02 1.49 16 13 N -0.66 -11.20 4.44 -109.19 -0.48 -11.68 16 14 C 0.14 1.96 2.73 -70.02 -0.19 1.77 16 15 H 0.09 1.09 7.66 -51.93 -0.40 0.69 16 16 C 0.48 7.05 7.48 36.00 0.27 7.32 16 17 O -0.48 -8.93 16.68 -18.76 -0.31 -9.25 16 18 O -0.52 -5.84 13.34 -39.25 -0.52 -6.36 16 19 C -0.10 -1.20 4.64 -104.62 -0.49 -1.68 16 20 C -0.07 -0.69 9.67 -39.59 -0.38 -1.07 16 21 C -0.16 -1.53 10.03 -39.52 -0.40 -1.93 16 22 C 0.10 1.09 7.30 -39.42 -0.29 0.81 16 23 F -0.14 -1.62 17.27 2.25 0.04 -1.58 16 24 C -0.15 -1.68 10.03 -39.51 -0.40 -2.07 16 25 C -0.06 -0.76 9.00 -39.59 -0.36 -1.12 16 26 H 0.01 0.20 6.57 -51.93 -0.34 -0.14 16 27 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 1.97 6.07 -51.93 -0.32 1.65 16 31 H 0.02 0.46 7.60 -51.93 -0.39 0.06 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.06 1.35 7.62 -51.93 -0.40 0.96 16 34 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 35 H 0.35 5.73 6.03 -39.29 -0.24 5.50 16 36 H 0.41 2.90 9.10 45.56 0.41 3.31 16 37 H 0.14 1.09 8.04 -52.49 -0.42 0.67 16 38 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 39 H 0.14 1.26 8.06 -52.48 -0.42 0.83 16 40 H 0.15 1.85 7.72 -52.49 -0.40 1.44 16 LS Contribution 335.82 15.07 5.06 5.06 Total: -1.00 -30.34 335.82 -7.29 -37.63 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -4.46 Total: 6.28 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -2.10 Total: -12.34 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.03 Total: -35.49 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.84 Total: -15.61 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.34 -7.29 -37.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590615317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.357 kcal (2) G-P(sol) polarization free energy of solvation -30.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds