Wall clock time and date at job start Tue Mar 31 2020 07:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47125 * 2 1 4 4 C 1.50696 * 109.47491 * 239.99509 * 2 1 3 5 5 H 1.08004 * 120.00248 * 240.00159 * 4 2 1 6 6 C 1.37879 * 120.00109 * 59.99954 * 4 2 1 7 7 N 1.31514 * 119.99523 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00396 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47022 * 60.00127 * 8 6 4 10 10 H 1.48503 * 109.47469 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47244 * 300.00093 * 8 6 4 12 12 C 1.53005 * 109.47056 * 119.99635 * 2 1 3 13 13 N 1.46900 * 109.46887 * 300.00119 * 12 2 1 14 14 C 1.46907 * 111.00001 * 180.02562 * 13 12 2 15 15 H 1.08998 * 109.46646 * 324.99831 * 14 13 12 16 16 C 1.50697 * 109.47216 * 84.99821 * 14 13 12 17 17 O 1.20832 * 119.99953 * 0.02562 * 16 14 13 18 18 O 1.34228 * 120.00322 * 180.02562 * 16 14 13 19 19 C 1.50696 * 109.47035 * 205.00046 * 14 13 12 20 20 C 1.38248 * 119.97128 * 139.99775 * 19 14 13 21 21 C 1.38196 * 120.02483 * 179.97438 * 20 19 14 22 22 C 1.38458 * 119.97492 * 0.02562 * 21 20 19 23 23 F 1.35104 * 120.02786 * 179.97438 * 22 21 20 24 24 C 1.38465 * 119.94675 * 0.24873 * 22 21 20 25 25 C 1.38197 * 119.97511 * 359.47283 * 24 22 21 26 26 H 1.08998 * 109.47415 * 299.99959 * 1 2 3 27 27 H 1.09003 * 109.47182 * 60.00525 * 1 2 3 28 28 H 1.09006 * 109.46818 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47300 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46610 * 299.99265 * 3 2 1 31 31 H 1.09000 * 109.47382 * 59.99467 * 3 2 1 32 32 H 0.97005 * 120.00111 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.47225 * 180.02562 * 12 2 1 34 34 H 1.08998 * 109.46938 * 59.99847 * 12 2 1 35 35 H 1.00901 * 111.00332 * 56.04657 * 13 12 2 36 36 H 0.96689 * 117.00426 * 180.02562 * 18 16 14 37 37 H 1.08002 * 119.98915 * 359.97438 * 20 19 14 38 38 H 1.07995 * 120.01604 * 180.02562 * 21 20 19 39 39 H 1.08007 * 120.01064 * 179.75151 * 24 22 21 40 40 H 1.07994 * 119.98821 * 180.29814 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9437 0.8300 -2.6034 8 14 2.3215 -1.1206 -4.0078 9 1 1.8259 -2.5205 -4.0075 10 1 1.8261 -0.4210 -5.2204 11 1 3.8065 -1.1212 -4.0080 12 6 2.0400 -0.7212 1.2493 13 7 1.5503 -0.0286 2.4487 14 6 2.0218 -0.6943 3.6704 15 1 2.0615 -1.7709 3.5053 16 6 3.3978 -0.1884 4.0191 17 8 3.9309 0.6419 3.3216 18 8 4.0313 -0.6601 5.1044 19 6 1.0744 -0.3945 4.8034 20 6 0.7431 -1.3865 5.7075 21 6 -0.1252 -1.1126 6.7472 22 6 -0.6638 0.1557 6.8828 23 9 -1.5132 0.4245 7.8985 24 6 -0.3357 1.1469 5.9733 25 6 0.5373 0.8722 4.9378 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9562 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 0.7096 1.1616 -3.4845 33 1 3.1300 -0.7208 1.2496 34 1 1.6766 -1.7488 1.2494 35 1 0.5437 0.0415 2.4402 36 1 4.9120 -0.3054 5.2875 37 1 1.1630 -2.3758 5.6013 38 1 -0.3835 -1.8875 7.4537 39 1 -0.7584 2.1355 6.0758 40 1 0.7971 1.6465 4.2311 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590615317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:34:46 Heat of formation + Delta-G solvation = -126.107567 kcal Electronic energy + Delta-G solvation = -23956.406173 eV Core-core repulsion = 20263.865421 eV Total energy + Delta-G solvation = -3692.540752 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 295.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.89935 -41.51622 -39.93559 -38.53419 -36.97044 -35.79202 -33.38281 -32.13730 -31.22003 -27.90952 -27.47238 -27.23761 -25.50579 -23.96595 -23.42289 -21.64488 -20.37952 -19.12245 -18.63763 -17.97195 -17.74395 -17.49781 -17.01822 -16.63165 -16.55282 -16.00425 -15.69562 -15.34281 -15.06206 -14.61016 -14.46170 -14.37194 -14.27803 -13.88911 -13.67089 -13.24305 -13.09233 -12.94816 -12.80080 -12.53398 -12.50212 -12.30839 -12.11101 -12.06177 -11.94230 -11.59614 -11.30409 -10.98612 -10.59550 -10.32321 -10.06499 -9.63805 -9.35324 -7.94991 -6.11701 0.02780 0.27863 1.30923 1.44348 1.45604 1.51986 2.03221 2.47230 2.58082 3.25547 3.27326 3.33261 3.51096 3.80560 3.97338 4.13457 4.34577 4.41036 4.47384 4.56317 4.62698 4.88251 4.92267 4.99125 5.03315 5.14999 5.17023 5.23262 5.31324 5.42713 5.45728 5.55996 5.69059 5.71468 5.79169 5.87668 6.00902 6.21059 6.34622 6.44869 6.55883 6.96827 7.12234 7.55525 9.02997 Molecular weight = 295.14amu Principal moments of inertia in cm(-1) A = 0.021968 B = 0.003812 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.269753 B = 7344.017466 C = 7960.094636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.062 3.938 3 C -0.100 4.100 4 C -0.527 4.527 5 H 0.045 0.955 6 C 0.023 3.977 7 N -0.902 5.902 8 Si 0.944 3.056 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.279 1.279 12 C 0.092 3.908 13 N -0.669 5.669 14 C 0.142 3.858 15 H 0.105 0.895 16 C 0.483 3.517 17 O -0.526 6.526 18 O -0.509 6.509 19 C -0.108 4.108 20 C -0.062 4.062 21 C -0.150 4.150 22 C 0.091 3.909 23 F -0.146 7.146 24 C -0.157 4.157 25 C -0.075 4.075 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.023 0.977 29 H 0.000 1.000 30 H 0.047 0.953 31 H 0.032 0.968 32 H 0.257 0.743 33 H 0.041 0.959 34 H 0.027 0.973 35 H 0.358 0.642 36 H 0.424 0.576 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.148 0.852 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.382 -4.573 20.046 20.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.061 3.939 3 C -0.158 4.158 4 C -0.566 4.566 5 H 0.064 0.936 6 C -0.176 4.176 7 N -0.541 5.541 8 Si 0.770 3.230 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.205 1.205 12 C -0.037 4.037 13 N -0.305 5.305 14 C 0.031 3.969 15 H 0.123 0.877 16 C 0.324 3.676 17 O -0.413 6.413 18 O -0.322 6.322 19 C -0.108 4.108 20 C -0.080 4.080 21 C -0.169 4.169 22 C 0.071 3.929 23 F -0.124 7.124 24 C -0.176 4.176 25 C -0.094 4.094 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.042 0.958 29 H 0.019 0.981 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.182 0.818 36 H 0.285 0.715 37 H 0.178 0.822 38 H 0.179 0.821 39 H 0.166 0.834 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.235 -3.907 19.660 20.082 hybrid contribution 0.418 -0.533 -0.971 1.184 sum -0.817 -4.440 18.689 19.226 Atomic orbital electron populations 1.21658 0.97616 0.98471 1.00095 1.18114 0.92698 0.92564 0.90503 1.21419 0.96547 0.98701 0.99105 1.21392 1.31318 1.11987 0.91921 0.93648 1.25517 0.95332 0.95624 1.01117 1.69960 1.37373 1.23490 1.23298 0.85847 0.78479 0.78973 0.79660 1.19765 1.21167 1.20489 1.21902 0.98158 0.94318 0.89288 1.60013 1.16996 1.53936 0.99527 1.19809 0.87802 0.98994 0.90328 0.87744 1.23553 0.88136 0.78486 0.77401 1.90757 1.67392 1.32043 1.51133 1.84457 1.36979 1.66406 1.44397 1.19521 0.99307 0.95149 0.96872 1.21129 0.95136 0.99840 0.91921 1.21350 0.99147 0.95694 1.00667 1.17988 0.92482 0.95290 0.87099 1.91490 1.68530 1.94602 1.57825 1.21278 1.00611 1.00356 0.95337 1.21017 0.94857 0.96693 0.96792 0.94619 0.92625 0.95784 0.98056 0.93393 0.94933 0.93355 0.93999 0.95527 0.81831 0.71461 0.82192 0.82116 0.83436 0.84891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 7.92 71.98 0.57 -4.90 16 2 C 0.06 2.96 0.57 -52.93 -0.03 2.93 16 3 C -0.10 -5.03 8.09 71.98 0.58 -4.45 16 4 C -0.53 -28.41 8.01 25.60 0.21 -28.21 16 5 H 0.05 2.43 7.74 -2.91 -0.02 2.41 16 6 C 0.02 1.26 5.15 84.66 0.44 1.70 16 7 N -0.90 -50.41 9.35 21.45 0.20 -50.21 16 8 Si 0.94 43.36 29.54 68.60 2.03 45.39 16 9 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 12 C 0.09 3.69 4.28 86.30 0.37 4.05 16 13 N -0.67 -21.97 4.44 -499.36 -2.22 -24.19 16 14 C 0.14 3.68 2.73 43.42 0.12 3.80 16 15 H 0.11 2.35 7.66 -2.39 -0.02 2.34 16 16 C 0.48 13.66 7.48 71.24 0.53 14.20 16 17 O -0.53 -19.71 16.68 21.95 0.37 -19.34 16 18 O -0.51 -10.14 13.34 -51.40 -0.69 -10.82 16 19 C -0.11 -2.32 4.64 -19.86 -0.09 -2.41 16 20 C -0.06 -1.03 9.67 22.26 0.22 -0.82 16 21 C -0.15 -2.41 10.03 22.31 0.22 -2.19 16 22 C 0.09 1.77 7.30 22.38 0.16 1.93 16 23 F -0.15 -3.02 17.27 44.97 0.78 -2.24 16 24 C -0.16 -3.16 10.03 22.31 0.22 -2.93 16 25 C -0.08 -1.69 9.00 22.26 0.20 -1.49 16 26 H 0.03 1.39 6.57 -2.39 -0.02 1.38 16 27 H 0.05 2.87 6.07 -2.39 -0.01 2.85 16 28 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.05 2.64 6.07 -2.38 -0.01 2.62 16 31 H 0.03 1.50 7.60 -2.39 -0.02 1.48 16 32 H 0.26 13.88 8.31 -92.70 -0.77 13.11 16 33 H 0.04 1.84 7.62 -2.39 -0.02 1.82 16 34 H 0.03 1.01 8.06 -2.39 -0.02 0.99 16 35 H 0.36 11.12 6.03 -89.69 -0.54 10.58 16 36 H 0.42 5.12 9.10 -74.06 -0.67 4.45 16 37 H 0.16 1.85 8.04 -2.91 -0.02 1.83 16 38 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 39 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 40 H 0.13 3.33 7.72 -2.91 -0.02 3.31 16 Total: -1.00 -65.60 335.82 4.05 -61.55 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -0.14 Total: 18.66 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 3.72 Total: -18.80 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -2.01 Total: -74.40 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -0.32 Total: -30.17 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.78 Total: -2.24 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -65.60 4.05 -61.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590615317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.554 kcal (2) G-P(sol) polarization free energy of solvation -65.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds